6. Compounds were synthesized as anti-racemates. For the synthetic method, see Dickinson, R.P.; Bell,
A.S.; Hitchcock, C.A.; Narayanaswami, S.; Ray, S.J.; Richardson, K.; Troke, P.F. Bioorg. Med. Chem.
Lett. 1996, 6(16), 2031-2036.
7. In silico enthalpies were also determined which generally aligned with in silico pKas. Briefly, using
Spartan 2006 program package, Me-metal-binding group (Me-MBG) ligands were minimized using the
MMFF-94 force field and optimized with the semi-empirical PM3 method. The CYP51 Fe-porphyrin
construct1 was minimized (MMFF-94) and then optimized using the PM3 semi-empirical method to
obtain an unligated structure. Me-MBGs were introduced and the energy was determined by a single
point calculation. The Fe-porphyrin and Me-MBG were complexed with only the Me-MBG ligand free to
move during optimization. Next, the Me-MBG was submitted for geometry optimization and enthalpy
measured. For the 1-imidazole and the 1-(1,2,4-triazole), the enthalpy values were determined to be -18.9
and -16.5 kcal/mol, respectively.
8. IC50 values for CYP3A4 enzyme were determined in human hepatocyte microsomes using 150 µM
testosterone as substrate (a concentration equal to the Km determined in the same lab). Reactions were
analyzed for product using HPLC/MS/MS methods and IC50 values (in µM) were determined by fitting a
4-parameter logistical fit to the dose response data (OpAns, LLC).
9. Shakeri-Nejad, K.; Stahlmann, R. Expert Opin. Pharmacother. 2006, 7(6), 639-651.
10. Denning, D.W.; Hope, W.W. Trends Microbiology 2010, 18(5), 195-204.
11. Homology modeling was conducting using Molecular Operating Environment (MOE; Chemical
Computing Group, 1010 Sherbrooke St. W, Suite 910 Montreal, Quebec, Canada H3A 2R7). A series of
homology models was constructed using the sequence information for Candida albicans and CYP51
crystal structures deposited in the Protein Data Bank. The model chosen for evaluation was developed
from a Trypanosoma cruzi crystal structure with posaconazole bound (3K1O; Lepesheva, G.I.; Hargrove,
T.Y.; Anderson, S.; Kleshchenko, Y.; Furtak, V.; Wawrzak, Z.; Villalta, F.; Waterman, M.R. J. Biol.
Chem. 2010, 285(33), 25582–25590). The homology model was then created using Amber99 as the
protein modeling forcefield and PFROSST as the forcefield for energy minimizations, with a final RMS
gradient of 0.5.
12. Eto, H.; Kaneko, Y.; Sakamoto, T. Chem. Pharm. Bull. 2000, 48(7), 982-990.
13. Female CD-1 mice (7 weeks, 18-25 g) were made neutropenic with IP injections of cyclophosphamide
(150 mg/kg) at 4 and 1 days before inoculation with C. albicans R303 via the tail vein. Compounds were
administered orally 2 h after infection on day 1. Kidneys were collected from treated mice on day 2, PBS
added, and then homogenized. Colony-forming units (CFU)/kidney were determined from number of
colonies detected on SDA plates from serial dilutions of the homogenates. Fluconazole was used as a
positive control and reduced kidney fungal burden 99% when orally dosed at 10 mg/kg (Ricerca
Biosciences, LLC).
14. Hoekstra, W.J.; Schotzinger, R.J. PCT Int. Appl. 2012, WO2012177725.
15. Compound 2f was synthesized from 3 as follows16: To a suspension of Cu powder (2.68 g, 42.2 mmol) in
DMSO (35 mL) was added ethyl bromodifluoroacetate (2.70 mL, 21.10 mmol), and the mixture was
stirred for 1 h at RT. 2,5-Dibromopyridine (2.50 g, 10.55 mmol) was then added and stirring continued
for 15 h at RT. The reaction was quenched with aqueous NH4Cl and extracted with DCM (3 x 25 mL).
The combined organic layers were washed with water and brine, dried over anhydrous (Na2SO4), and
concentrated to afford a crude product mixture which upon column purification (EtOAc/hexane) afforded
the ethyl ester intermediate (2.40 g, 8.57 mmol, 81%) as a pale yellow oil. To a stirred solution of 2,4-
difluoro-bromobenzene (1.65 g, 8.57 mmol) in diethyl ether (10 mL) was added n-BuLi (3.70 mL, 8.57
o
mmol) at -70 C followed by addition of ester (2.40 g, 8.57 mmol) in diethyl ether (5 mL) after 15
o
minutes. The reaction mixture was stirred for 1 h at -70 C and warmed to RT and stirred 2 h. The
reaction was quenched with aqueous NH4Cl solution and extracted with EtOAc (3 x 20 mL). The
combined organic layers were washed with water, washed with brine, dried (Na2SO4), and concentrated.
The crude compound was purified by column chromatography to afford ketone 4 (1.30 g, 3.73 mmol,
43%) as a yellow liquid. To a stirred solution of ketone 4 (1.30 g, 3.73 mmol) in diethyl ether (300 mL)
was added freshly prepared diazomethane at 0 oC followed by warming to RT. The reaction mixture was
stirred for 2 h. The volatiles were removed to afford a crude product mixture which upon column