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C. Kiritsis et al. / European Journal of Medicinal Chemistry 46 (2011) 5668e5674
4.3.6. Synthesis of 1-(30-C-cyano-
b-D-glucopyranosyl)thymine (6c)
4.4.2. Synthesis of 3-C-cyano-3-deoxy-a-D-allopyranose (9)
Thymine derivative 6c was synthesized from 5c by the similar
procedure as described for 6a. The residue was purified by flash
chromatography (CH2Cl2/MeOH, 9:1) to afford pure 6c (114 mg,
To a solution of 8 (1.43 g, 5.31 mmol) in MeOH (10.9 mL) and
H2O (62.2 mL) was added Amberlite IR 120 (Hþ) resin and the
mixture was refluxed overnight. The reaction mixture was filtered
and evaporated to dryness to give compound 9 (924 mg, 92%,
Rf ¼ 0.17 in EtOAc) as a viscous oil, and it was used without further
71%, Rf ¼ 0.32 in CH2Cl2/MeOH, 8:2) as a white foam. ½a D22
ꢁ
þ 4 (c
0.31, CD3OD); lmax 261 nm (ε 4238); 1H NMR (CD3OD):
d 7.57 (s, 1H,
H-6), 6.03 (d, 1H, J1 ,2 ¼ 9.0 Hz, H-10), 4.00e3.67 (m, 5H, H-20, H-40,
purification. ½a D22
ꢁ
þ 6 (c 0.45, MeOH); Anal. Calcd for C7H11NO5: C,
0
0
H-50, H-6a0, H-6b0), 1.91 (s, 3H, CH3); 13C NMR (CD3OD):
d
162.62,
44.45; H, 5.86, N, 7.40. Found: C, 44.21; H, 5.92, N, 7.22; ESI-MS: (m/
z) 190.20 (M þ Hþ).
150.49, 137.12, 119.91, 110.69, 92.76, 79.83, 71.01, 70.90, 69.81, 62.46,
13.33; IR (Nujol, cmꢂ1): 2245 (CN); Anal. Calcd for C12H15N3O7: C,
46.01; H, 4.83; N, 13.41. Found: C, 45.79; H, 4.61; N, 13.26; ESI-MS
(m/z) 314.28 (M þ Hþ).
4.4.3. Synthesis of 1,2,4,6-tetra-O-acetyl-3-C-cyano-3-deoxy-D-
allopyranose (10)
Compound 9 (924 mg, 4.89 mmol) was dissolved in a mixture of
pyridine (17.12 mL) and Ac2O (8.8 mL). The reactionwas carried out at
room temperature for 1 h, then was quenched with MeOH at 0 ꢀC
and was concentrated in vacuum. The residue was diluted with
EtOAc, washed with saturated sodium bisulfate, sodium bicarbonate
and H2O. The organic extract was dried over anhydrous sodium
sulfate, filtered and evaporated to dryness to give compound 10
4.3.7. Synthesis of 1-(20,30,40,60-tetra-O-acetyl-30-C-cyano-
b-D-
glucopyranosyl)N4-benzoylcytosine (5d)
N4-benzoyl cytosine derivative 5d was synthesized from 4 by
the similar procedure as described for 5a. It was purified by flash
chromatography (EtOAc/hexane, 4:6) to give pure 5d (0.19 g, 56%,
Rf ¼ 0.32 in EtOAc/hexane, 1:1) as a white solid, mp 240ꢂ242 ꢀC.
½
a 2D2
ꢁ
ꢂ 5 (c 0.43, CHCl3); lmax 263 nm (ε 25940); 1H NMR (CDCl3):
(1.56 g, 89%, Rf ¼ 0.41 in EtOAc/hexane, 3:7) as a colorless oil. ½a D22
ꢂ 2
ꢁ
0
0
d
7.95e7.49 (m, 7H, Bz, H-5 and H-6), 6.37 (d, 1H, J1 ,2 ¼ 9.4 Hz, H-
(c 0.55, CHCl3); Anal. Calcd for C15H19NO9: C, 50.42; H, 5.36, N, 3.92.
10), 5.82 (d, 1H, H-20), 5.67 (d, 1H, J4 ,5 ¼ 10.0 Hz, H-40), 4.48e4.40
(m, 1H, H-50), 4.28e4.14 (m, 2H, H-6a0, H-6b0), 2.18, 2.14, 2.11, 2.05
(4s, 12H, 4OAc); Anal. Calcd for C26H26N4O11: C, 54.74; H, 4.59; N,
9.82. Found: C, 54.61; H, 4.65; N, 9.71; ESI-MS (m/z) 571.48
(M þ Hþ).
Found: C, 50.54; H, 5.32, N, 3.87; ESI-MS: (m/z) 358.30 (M þ Hþ).
0
0
4.5. Synthesis of 30-C-cyano-30-deoxy-
b-D-allopyranonucleosides
12aed
4.5.1. Synthesis of 1-(20,40,60-tri-O-acetyl-30-C-cyano-30-deoxy-
allopyranosyl)5-fluorouracil (11a)
b
-D-
L,
4.3.8. Synthesis of 1-(30-C-cyano-
b
-D-glucopyranosyl)cytosine (6d)
Cytosine derivative 6d was synthesized from 5d by the similar
procedure as described for 6a. The residue was purified by flash
chromatography (CH2Cl2/MeOH, 9:1) to afford pure 6d (61 mg, 61%,
A mixture of 5-fluorouracil (126 mg, 0.97 mmol), HMDS (254
m
1.20 mmol) and saccharine (8 mg, 0.045 mmol) in anhydrous
CH3CN (3.5 mL) was refluxed for 30 min under nitrogen. 1,2,4,6-
tetra-O-acetyl-3-C-cyano-3-deoxy D-allopyranose (10) (0.25 g,
Rf ¼ 0.23 in CH2Cl2/MeOH, 7:3) as a white foam. ½a D22
ꢁ
ꢂ 3 (c 0.31,
CD3OD); lmax 269 nm (ε 7569); 1H NMR (CD30OD):
d
7.70 (d, 1H,
0.69 mmol) and Me3SiOSO2CF3 (152 mL, 0.84 mmol) were then
0
0
J5,6 ¼ 7.5 Hz, H-6), 6.12 (d, 1H, J1 ,2 ¼ 9.0 Hz, H-1 ), 5.94 (d, 1H, H-5),
added and the reaction mixture was refluxed for 4 h, cooled,
neutralized with aqueous sodium bicarbonate, and extracted with
CH2Cl2 (200 mL). The organic extract was dried over anhydrous
sodium sulfate, filtered and evaporated to dryness. The residue was
purified by flash chromatography (EtOAc/hexane, 4:6) to give pure
11a (0.19 g, 64%, Rf ¼ 0.33 in EtOAc/hexane,1:1) as a white solid, mp
4.00e3.69 (m, 5H, H-20, H-40, H-50, H-6a0, H-6b0); 13C NMR (CD3OD):
d
165.72, 156.91, 143.22, 119.16, 94.96, 91.37, 79.96, 72.01, 70.28,
68.16, 61.92; IR (Nujol, cmꢂ1): 2235 (CN); Anal. Calcd for
C11H14N4O6: C, 44.30; H, 4.73; N, 18.79. Found: C, 44.48; H, 4.58; N,
18.96; ESI-MS (m/z) 299.23 (M þ Hþ).
108ꢂ110 ꢀC. ½a 2D2
ꢂ 2 (c 0.28, CHCl3); lmax (CHCl3) 263 nm (ε 9073);
ꢁ
4.4. Synthesis of 1,2,4,6-tetra-O-acetyl-3-C-cyano-3-deoxy-D-
allopyranose (10)
1H NMR (CDCl3):
d
8.58 (br s,1H, NH), 7.18 (d,1H, J6,F5 ¼ 5.6 Hz, H-6),
5.93 (d, 1H, J1 ,2 ¼ 9.4 Hz, H-10), 4.92 (dd, 1H, J2 ,3 ¼ 5.0 Hz, H-20),
0
0
0
0
0
0
0
0
0
5.79 (dd,1H, J3 ,4 ¼ 4.9 Hz, J4 ,5 ¼ 9.7 Hz, H-4 ), 4.21e4.06 (m, 3H, H-
6a0, H-6b0, H-50), 3.89 (t, 1H, H-30), 2.03, 1.98, 1.96, (3s, 9H, 3OAc);
Anal. Calcd for C17H18FN3O9: C, 47.78; H, 4.25; N, 9.83. Found: C,
47.56; H, 4.31; N, 9.79; ESI-MS (m/z) 428.36 (M þ Hþ).
4.4.1. Synthesis of 3-C-cyano-3-deoxy-1,2:5,6-di-O-isopropylidene-
a-D-allofuranose (8)
Phenyl chlorothionoformate (1.39 mL, 10.33 mmol) was added
to a solution of 2 (2 g, 7.01 mmol), DMAP (3.03 mmol, 0.37 g), and
Et3N (1.47 mL, 10.69 mmol) in CH3CN (73.68 mL) under nitrogen at
4.5.2. Synthesis of 1-(30-C-cyano-30-deoxy-
b-D-allopyranosyl)5-
fluorouracil (12a)
0
ꢀC. The mixture was stirred for 1 h and then diluted with AcOEt
(500 mL). The whole was washed with H2O (3 ꢄ 150 ml) and the
separated organic phase was dried over anhydrous sodium sulfate,
filtered and evaporated to dryness. The residue 7 was coevaporated
two times with toluene and then was dissolved in toluene
(73.68 mL). Bu3SnH (2.93 mL, 11.06 mmol) was added to the above
solution containing AIBN (1.1 mmol, 182 mg) at 100 ꢀC under
nitrogen. After being heated for 45 min, the solvent was removed
under reduced pressure. The residue was purified by flash chro-
matography (EtOAc/hexane, 3:7) to give compound 8 (1.43 g, 76%,
Rf ¼ 0.44 in EtOAc/hexane, 3:7) as a white solid : mp 104ꢂ106 ꢀC.
To a solution of compound 11a (0.19 g, 0.44 mmol) in AcOH-
pyridine (2.2 mL, 1:4 v/v), 85% hydrazine hydrate (0.31 ml,
5.28 mmol) was added at room temperature. After continually
stirring for 16h, acetone (1.1 mL) was added, and stirring for an
additional 30 min. The mixture was evaporated to dryness and the
residue was purified by flash chromatography (CH2Cl2/MeOH, 9:1)
to afford pure 12a (86 mg, 65%, Rf ¼ 0.26 in CH2Cl2/MeOH, 9:1) as
a white foam. ½a 2D2
ꢁ
ꢂ 8 (c 0.65, CD3OD); lmax 263 nm (ε 8929); 1H
NMR (CD3OD):
d
7.80 (d, 1H, J6,F5 ¼ 6.5 Hz, H-6), 6.01 (d, 1H,
J1 ,2 ¼ 9.2 Hz, H-10), 4.46e4.42 (m, 1H, H-50), 4.23 (dd, 1H,
0
0
½
a 2D2
ꢁ
þ 16 (c 0.40, CHCl3); 1H NMR (CDCl3):
d 5.81 (d, 1H,
J3 ,4 ¼ 5.6 Hz, J4 ,5 ¼ 12.1 Hz, H-4 ), 4.05 (dd, 1H, J2 ,3 ¼ 5.1 Hz, H-2 ),
0
0
0
0
0
0
0
0
J1,2 ¼ 3.7 Hz, H-1), 4.76 (dd,1H, J2,3 ¼ 4.8 Hz, H-2), 4.21e3.94 (m, 4H,
H-4, H-5, H-6a, H-6b), 2.88 (dd, 1H, H-3), 1.51 (s, 3H, CH3), 1.42 (s,
3H, CH3), 1.33 (s, 6H, 2 CH3). Anal. Calcd for C13H19NO5: C, 57.98; H,
7.11; N, 5.20. Found: C, 58.12; H, 7.20; N, 5.41; ESI-MS (m/z) 270.27
(M þ Hþ).
3.95e3.84 (m, 2H, H-6a0, H-6b0), 3.75 (t, 1H, H-30); 13C NMR
(CD3OD): d 158.09,150.72,141.39,128.03,118.43, 96.49, 84.37, 67.33,
64.11, 61.09, 29.12; IR (Nujol, cmꢂ1): 2250 (CN); Anal. Calcd for
C11H12FN3O6: C, 43.86; H, 4.02; N, 13.95. Found: C, 43.74; H, 3.94; N,
13.82; ESI-MS (m/z) 302.21 (M þ Hþ).