S. R. Walker et al. / Bioorg. Med. Chem. Lett. 21 (2011) 5092–5097
5093
the former C2 of PEP (Fig. 1).8,15 Attack of water on the electrophilic
oxocarbenium ion gives rise to tetrahedral phosphohemiketal
intermediate 5, and elimination of phosphate leads to the open
chain form (6) of the product DAH7P.
CO2-
O
P
CO2-
CO2-
O
O
O
O
O
O
P
O
HO
O
P
O
HO
Previously, a series of PEP analogues was synthesised and inves-
tigated as inhibitors to examine the ability of inhibitors to target
the PEP site of the DAH7P synthase from Escherichia coli.16 Com-
pounds bearing both carboxylate and phosphonate or phosphate
groups separated by a similar distance to those found in PEP were
found to be effective competitive inhibitors with respect to PEP.
The best inhibitors of the enzyme were compounds that included
a trigonal centre adjacent to the carboxylate moiety, such as ally-
licphosphonate 7 and vinylphosphonate 8. These compounds were
considered to be mimicking the intermediate oxocarbenium ion 4.
In this study, we have elaborated these single-site inhibitors to
include an appropriately spaced distal phosphate moiety, posi-
tioned to be capable of interacting with the binding pocket for
the corresponding phosphate moiety of co-substrate E4P (Fig. 2).
This alteration was made in order to allow the inhibitors to bind
to both PEP and E4P binding sites simultaneously, utilising the
principle of multivalency.17 We report the synthesis ofthe ex-
tended inhibitors based on allylicphosphonate 7 and vinyl phos-
phonate 8 (Fig. 3)16, and study of their interaction with E. coli
DAH7P synthase by both enzyme inhibition measurements and
molecular modelling.
The synthesis of the allylicphosphonate 9 began with the syn-
thesis of aldehyde 12 in two steps from 1,5-pentanediol. Monopro-
tection of 1,5-pentanediol with tert-butyldiphenylsilyl chloride
followed by oxidation with 2-iodoxybenzoic acid gave aldehyde
12.18,19 The aldehyde 12 was treated with the lithium enolate of
selenide 1320 to give a separable mixture of syn and anti adducts
14 (Scheme 1). The relative stereochemistry of each adduct was
established by comparison of the 13C NMR spectra with the exam-
ples reported by Yang et al.21 On mild oxidation both syn and anti-
phenylselenides 14 underwent clean elimination to the corre-
sponding acrylate 15. Acetylation of the allylic alcohol 15 gave allyl
7,Ki =270 50µM
9
-
O
P
CO2
O
O
P
O
HO
O
P
O
HO
µM
K
8, i =4.7 0.7
10
Figure 3. Parent PEP-competitive inhibitors allylicphosphonte7 and vinyl phos-
phonate 8, and their corresponding extended inhibitors 9 and 10.
acetate 16, and heating with triethylphosphite gave allylicphosph-
onate 17 as an inseparable 7:3 mixture of (Z) and (E)-isomers. The
identity of the major and minor isomers of phosphonate 17 was as-
signed by 1H NOESY NMR, with only the minor (E)-product giving a
clear NOESY signal from resonance transfer between the vinyl pro-
ton and thephosphonate methylene protons (see Supplementary
data, Figure S1). Desilylation and phosphorylation of 17 gave the
diethyl phosphate ester 19, and deprotection with trimethylsilyl
bromide followed by aqueous potassium hydroxide gave the de-
sired allylicphosphonate 9 after anion-exchange chromatography.
The yield of the unprotected allylicphosphonate was disappoint-
ingly low, and was due to cleavage of the phosphate ester during
deprotection.
The synthesis of vinyl phosphonate 10 was achieved in nine
steps from 1,5-pentanediol via aldehyde 12 (scheme 2). Using a
modified Darzen’s condensation22,23 the aldehyde was elaborated
into chloroepoxide 21, which on treatment with magnesium iodide
underwent ring opening with subsequent expulsion of chloride to
give the corresponding iodoketone, which on reductive workup
give the
a-ketoester 22. The preparation of a-ketoester 22 from
aldehyde 12 could be readily carried out as one sequence, without
chromatographic purification of the intermediates. Treatment of
OH
a
CO2Et
SePh
TBDPSO
TBDPSO
O
TBDPSO
TBDPSO
14
12
b
OAc
OH
CO2Et
c
CO2Et
16
15
d
O
CO2Et
OEt
P
CO2Et
TBDPSO
EtO
EtO
O
O
e, f
Z:E
OEt
OEt
P
17
Z
:
E
OEt
P
O
19
7:3
7:3
O
g, h
O
P
O
CO2
O
PhSe
CO2Et
O
P
Z:E
OH
7:3
O
13
9
Figure 2. The active site of phenylalanine-regulated DAH7PS from E. coli (PDB
1N8F).1 A sulfate ion bound the active site interacts with Thr100 and Arg99, which
is indicative of the E4P phosphate position when it is bound in the active site. The
enzyme is displayed with white carbons and the active site bound PEP is shown
with green carbon atoms. H-bonds are displayed as black dashed lines.
Scheme 1. Synthesis of allylicphosphonate 9. Reagents and conditions: (a) 13, LDA,
THF, À78 °C (72%), (b) aq H2O2, Et2O (94%), (c) AcCl, py, DCM, 0 °C (93%), (d) P(OEt)3,
80 °C (82%), (e) TBAF, THF (90%), (f) (EtO)2POCl, iPrNEt2, DMAP, DCM (83%), (g)
TMSBr, DCM, (h) aq KOH (11%, two steps).