1116
D. Patel et al. / Bioorg. Med. Chem. Lett. 22 (2012) 1111–1117
Figure 3. Key interaction of compounds 2 and 5o with active site-A and secondary aryl-binding site-B. (a) Binding pose of compound 2 in the PTP1B active site is indicated,
wherein it interact closely with key residues of site A and marginally with site B. (b) Compound 5o docks very well into both the sites (A & B), particularly, flipping of
thiadiazolyl moiety in site B and its strong interactions with key resides of site B (Asp548, Arg524 and Arg754) favors best fits of 5o. Residue numbering is as per current
numbering (PDB code: 1Q6T): Arg24 (524), Asp48 (548) and Arg254 (754).
higher bioavailability (%F: ꢁ6.5%). Thus improved pharmacokinetic
profile of compound 5o justifies its excellent pharmacodynamic ef-
fects (antidiabetic activity) in C57 mice, when administered orally.
The molecular docking analysis of 5o was carried in Glide, to
understand its critical interactions with both the binding sites (A
and B) of PTP1B enzyme.23 The initial Glide docking studies for
5o gave poor results in terms of binding conformation. Based on
this observation, the compound 5o was docked using the induced
fit docking (IFD) protocol. The IFD is based on the docking program
Glide with the refinement module in Prime (Schrodinger, Inc.),
which was reported to accurately predict the ligand binding modes
and concomitant structural changes in the receptor.23
derivatives shows best selectivity, due to favorable orientation of
ligand across both the binding sites of the PTP1B enzyme. The lead
compound 5o shows significant antihyperglycemic effects
(in vivo), along with oral bioavailability. Thus, preliminary study
results confirm that highly potent and selective PTP1B inhibitor
could be viable approach for the effective treatment of T2DM.
Acknowledgment
We are grateful to the management of Zydus Group for encour-
agement and support.
Since the interaction of compound 2 with the PTP1B enzyme is
unpublished, molecular docking analysis was also carried out for
compound 2 (Fig. 3a). As described earlier, for achieving selectivity
over TCPTP, interactions in site B is essential. The IFD results illus-
trate that compound 2 completely docks in the binding site A and
the DFMP substituted phenyl ring of compound 2 strongly coordi-
nate with Phe682 (site A residue), while the oxy acetic acid and thi-
adiazolyl ring of compound 2 partially project in site B and interact
partly with key residues of site B. In vitro, ꢁ7-fold selectivity over
TCPTP enzyme was observed with compound 2 and it could be
attributed to its partial orientation in site B, which is essential
for achieving selectivity over TCPTP enzyme.
Supplementary data
Supplementary data associated with this article can be found, in
References and notes
1. Bloomgarden, Z. T. Diabetes Care 1996, 19, 295.
2. Wild, S.; Roglic, G.; Green, A.; Sicree, R.; King, H. Diabetes Care 2004, 27, 1047.
3. Eckel, R. H.; Grundy, S. M.; Zimmet, P. Z. Lancet 2005, 365, 1415.
4. Hussain, A.; Claussen, B.; Ramachandean, A.; Williams, R. Diabetes Res. Clin.
Pract. 2007, 76, 317.
5. (a) Nathan, D. M. N. Engl. J. Med. 2002, 347, 1342; (b) Ceriello, A. Diabetes 2005,
54, 1.
The IFD results of compound 5o illustrated that introduction of
DFMP-naphthyl template allows to adopt new conformation; as a
result, it docks very well at the both binding sites ( Fig. 3b). It
was observed that upon IFD, flipping of thiadiazolyl ring was ob-
served in site B and because of this change, compound 5o docks
very well into both the sites (A and B). Thus the PTP1B selectivity
over TCPTP was achieved by taking advantage of amino acid differ-
ences in the site B. In particular, the flipping of thiadiazolyl moiety
in site B and its strong interaction with key resides of site B
(Asp548, Arg524 and Arg754). The favorable hydrogen bond inter-
actions of compound 5o with both the sites (A and B) of PTP1B en-
zyme support its potent in vitro PTP1B activity and excellent
selectivity over TCPTP.
6. Nichols, G. A.; Gomez-Caminero, A. Diabetes Obes. Metab. 2007, 9, 96.
7. Westphal, S. A.; Palumbo, P. J. Insulin 2007, 2, 31.
8. (a) Frank, L. JAOA 2010, 110, eS13; (b) Krentz, A. J.; Bailey, C. J. Drugs 2005, 65.
9. Padwal, R.; Majumdar, S. R.; Johnson, J. A.; Varney, J.; McAlister, F. A. A. Diabetes
Care 2005, 28, 736.
10. (a) Vague, P.; Raccah, D. Horm. Res. 1992, 38, 28; (b) Taylor, S. I.; Accili, D.; Imai,
Y. Diabetes 1994, 43, 735.
11. Cho, S. Y.; Ahn, J. H.; Ha, J. D.; Kang, S. K.; Baek, J. Y.; Han, S. S.; Shin, E. Y.; Kim, S.
S.; Kim, K. R.; Cheon, H. G.; Choi, J.-K. Bull. Korean Chem. Soc. 2003, 24, 1455.
12. Pei, Z.; Liu, G.; Lubben, T. H.; Szczepankiewicz, B. Z. Curr. Pharm. Des. 2004, 10.
13. Puius, Y. A.; Zhao, Y.; Sullivan, M.; Lawrence, D. S.; Almo, S. C.; Zhang, Z.-Y. Proc.
Natl. Acad. Sci. U.S.A. 1997, 94, 13420.
14. Anderson, H. S.; Iversen, L. F.; Jeppesen, C. B.; Branner, S.; Norris, K.;
Rasmussen, H. B.; Moller, K. B.; Moller, N. P. H. J. Biol. Chem. 2000, 275, 7101.
15. Burke, T. R., Jr.; Ye, B.; Akamatsu, M.; Ford, H.; Yan, X.; Kole, H. K.; Wolf, G.;
Shoelson, S. E.; Roller, P. P. J. Med. Chem. 1996, 39, 1021.
16. Combs, A. P. J. Med. Chem. 2010, 53, 2333.
In summary, novel triaryl sulfonamide-based PTP1B inhibitors
containing DFMP-substituted naphthyl template at R1 show excel-
lent in vitro potency and selectivity over TCPTP, indicating that
among three different ring systems selected as R1, only naphthyl
17. Patel, D.; Jain, M.; Shah, S. R.; Bahekar, R.; Jadav, P.; Darji, B.; Siriki, Y.;
Bandyopadhyay, D.; Joharapurkar, A.; Kshirasagar, S.; Patel, H.; Shaikh, M.;
Sairam, K. V. V. M.; Patel, P. ChemMedChem 2011, 6, 1011.
18. (a) Han, Y.; Belley, M.; Bayly, C. I.; Colucci, J.; Dufresne, C.; Giroux, A.; Lau, C. K.;
Leblanc, Y.; Mckay, D.; Therien, M.; Wilson, M.; Skorey, K.; Chan, C.; Scapin, G.;