ACS Medicinal Chemistry Letters
Letter
Information) very similar to what was previously published for
the unmodified peptide.19 Only MMP13 showed significant
cleavage of 3, albeit much slower than MMP12.
weak IC50 of 48 μM, most probably due to its inability to
chelate zinc. This indicates that in the absence of hMMP12,
nonproductive degradation will occur, whereas in the presence
of hMMP12, a weak inhibitor will be formed followed by
productive degradation to the potent hMMP12 inhibitor 1 over
time (Scheme 1).
Furthermore, 5 hydrolyzed over time to the more hydro-
philic free MMP12 inhibitor 1. Hence, the successful TAP
design produced inhibitor 1 in a completely MMP12-
dependent fashion through a two-step process: the initial
enzymatic cleavage of prodrug 3 to release predrug 5 followed
by its spontaneous conversion into the final drug (1) (Scheme
1). However, there was a significant delay between enzyme
activity and production of its own inhibitor. This is desirable to
produce a burst of predrug 5 that upon hydrolysis to 1
effectively inhibits MMP12. Together with the MMP12
inhibitor (1), we found an additional peak corresponding to
compound 7 (Scheme 1), a result of the sulfonamide hydrolysis
of 3. N-acylated sulfonamides hydrolyze spontaneously to
secondary sulfonamides as we showed by incubating predrug 5
and prodrug 3 in TCN buffer pH 7.5 at 37 °C in the absence of
enzyme (Figure 1b,c). In both cases, the starting materials
converted over time into compounds 1 and 7, respectively, at a
different rate (Table 1). A similar degree of stability was
Following this mechanism, the limiting step for the
conversion to the inhibitor is the spontaneous degradation of
acylated sulfonamides; therefore, the concentration of inhibitor
released will be proportional to the concentration of active
hMMP12 since predrug 5 does not strongly inhibit MMP12
(see Figure S4a,b in the Supporting Information). To expand
this concept to similar inhibitors, the same set of experiments
was performed with prodrug 4. Again, the generation of the
inhibitor, in this case compound 2, happened exclusively in the
presence of hMMP12 (see Figure S5 in the Supporting
Information). Next, we studied the molecular factors affecting
the spontaneous hydrolysis of the prodrugs and intermediates.
It was previously demonstrated that the hydrolysis of N-
acylated sulfonamides highly depends on the pH.24 We
examined how different substitutions affect the stability of
these model compounds. When leucine at the P1 site in 4 was
substituted by glycine (10, Table 1), the stability in buffer pH
7.5 decreased. However, the terminal free carboxylic acid as in 5
or 6 increased the stability of the molecule as compared to the
amide (3 or 4), suggesting that the conversion occurs via a
typical nucleophilic attack by water on the sulfonamide. The
biphenyl derivatives degraded generally faster than those
containing the methoxyphenyl group (Table 1). These data
indicate that by modifying either the peptidic sequence or the
aryl-sulfonamide scaffold, it is possible to control the timing of
drug release and therefore the window between the enzymatic
activation and the end of drug delivery. In this example, the
spontaneous conversion of 3 into 7 is slow as compared to its
proteolytic cleavage in the presence of hMMP12 (Figure 1a).
Therefore, enzymatic cleavage will dominate. Once converted
into predrug 5, irreversible release of the potent drug 1 will
occur (see Figure S4c in the Supporting Information).
Additionally, we used an activity-based assay to demonstrate
the TAP concept and confirm the HPLC results (Figure 2).
The longer the incubation time of prodrug 3 with hMMP12,
the more inhibitor was released, and the lower was the
enzymatic activity (Figure 2a). The same result was obtained
when compound 5 was incubated without hMMP12, since 5
spontaneously degraded to generate the potent MMP12
inhibitor 1, as observed by HPLC (Figure 2b). On the other
hand, the incubation of 3 without hMMP12 did not lead to any
reduced enzymatic activity, showing once more that the
spontaneous degradation of the prodrug will not have an effect
on the target enzyme (Figure 2c). As a control, the stability of
hMMP12 activity over time was monitored (see Figure S6a in
the Supporting Information). One of the key features of the
TAP approach is that a broad-spectrum inhibitor can be
converted to a specific inhibitor. To prove this, we tested the
prodrug with hMMP8, another protease that is inhibited by 1
(see Figure S7 in the Supporting Information). Unlike
hMMP12, hMMP8 fails to significantly cleave the prodrug
due to the specificity of the peptidic sequence toward
hMMP12; thus, inhibitor 1 is only sparsely released as
compared to hMMP12. Instead, the prodrug mainly degrades
over time to compound 7, which has no effect on the enzymatic
activity of MMPs (Figures 1d and 2d). To support the
importance of the peptidic sequence as supplier of drug
Table 1. Compounds Containing the Arylsulfonamide
Scaffold Tested as Substrates of hMMP12 and Half Lifetimes
a
in TCN Buffer pH 7.5
t50 pH 7.5
compd
R1
R2
R3
(h)
3
Z-Pro-Leu(CO)− −HN-Leu-Glu-Glu-
−Ph
5.1 0.5
Ala(NH2)
4
Z-Pro-Leu(CO)− −HN-Leu-Glu-Glu-
−OMe 28
4
Ala(NH2)
5
6
7
Z-Pro-Leu(CO)− −OH
Z-Pro-Leu(CO)− −OH
−Ph
−OMe 77
−Ph
27 0.9
9
−H
−HN-Leu-Glu-Glu-
NH
Ala(NH2)
8
9
−H
−HN-Leu-Glu-Glu-
−OMe NH
−OMe 27
Ala(NH2)
Z-Pro-Leu-
Gly(CO)−
−OH
1
10
Z-Pro-Gly(CO)− −HN-Leu-Glu-Glu-
−OMe 6.4 0.6
Ala(NH2)
a
NH, no hydrolysis.
observed in fetal calf serum (FCS) and heat inactivated FCS,
suggesting a lack of enzymatic activity in these media that could
accelerate hydrolysis or promote undesirable degradation
pathways (see Figure S2 in the Supporting Information). The
hydrolysis of N-acylated sulfonamides leading to secondary
sulfonamides has been observed in vivo.22 On the other hand,
the lability of prodrug 3 indicates that the present TAP design
leads to byproduct that might affect the target enzyme.
Therefore, we investigated the inhibitory potency of all
molecules generated upon incubation of compound 3 with
and without hMMP12. Inhibition constants were determined
using the MMP12 FRET reporter LaRee5, previously
developed in our lab23 (see Figure S3 in the Supporting
Information). Compound 1 was by far the most potent
inhibitor with an IC50 = 0.29 μM. Compound 5, which also has
a free carboxylic acid group, inhibited hMMP12 with an IC50
=
13 μM. Byproduct 7 was only able to inhibit hMMP12 with a
655
dx.doi.org/10.1021/ml3001193 | ACS Med. Chem. Lett. 2012, 3, 653−657