Biomacromolecules
Article
by further incubation for 5 min, after each addition. Here, it should be
noted that the final concentrations of the respective amphiphiles were
above each CMC. Control experiments were also conducted by
measuring solutions which only contained EthBr and the amphiphiles.
Results were normalized against the set 100% value and expressed as a
percentaged reduction of the relative fluorescence intensity.
Agarose Gel Electrophoresis. One day prior to electrophoresis the
glycine amphiphiles were dissolved in ddH2O. Complexes of glycine
amphiphiles and fluorescently labeled siRNA (FAM-siRNA, GU-
CAACGGAUUUGGUCGUA, Eurogentec) were created by incuba-
tion for 30 min at room temperature. They were loaded on 4% high-
resolution agarose gels (MetaPhor Agarose, Lonza) and subjected to
electrophoresis at 70 V. Polymer-FAM-siRNA-complexes were
visualized after excitation at 495 nm and acquiring the emitted
fluorescence signal at 520 nm using the Fusion SL imager (Vilber
Lourmat).
Cell Culture and Treatment. Two human cell lines HeLa (ATCC
No. CCL-2) and HeLa-Luc (provided by Biontex Laboratories GmbH,
constitutively expressing the firefly luciferase) were cultured at 37 °C
and 5% CO2 either in RPMI 1640 or DMEM (Biochrom AG) with 1.5
g/L NaHCO3 both supplemented with 10% fetal bovine serum. Cells
were grown in 96-well plates (6 × 104 cells per well) for 24 h and
transfected using the glycine amphiphiles and Lipofectamine 2000
transfection reagent (Invitrogen) as control. One day before
transfection the glycine amphiphiles were dissolved in ddH2O.
Depending on the following experiments different double-stranded
siRNA molecules were used.
Intracellular Uptake. For the determination of transfection
efficiency of each glycine amphiphile the intracellular siRNA-uptake
was measured using fluorescently labeled nonsense siRNA (Cy3 dye-
Labeled Pre-miR Negative Control #1 - Life Technologies). 48 h after
transfection, efficiency of delivery was analyzed by fluorescence
microscopy.
Cell Viability Assays. Cytotoxicity and cell viability were measured
using a colorimetric WST-1 assay (Roche) and the xCELLigence
system (Roche) to monitor cell index profiles and determining cell
counts, proliferation and cytotoxicity. Both assays were performed in
96-well plates (6 × 104 cells per well). Each plate contained blanks,
controls (negative and positive), and substance dilution series with
four replicates. Nontargeting siRNA (ON-TARGETplus nontargeting
pool, D-001810-10, Thermo Fisher Scientific) transfection was
accomplished and WST-1 assay was performed according to the
manufacturer’s instructions.
RNA Interference and Transient Transfections. siRNAs targeting
GAPDH (ON-TARGETplus GAPD Control siRNA, D-001830-01,
Thermo Fisher Scientific) or Luciferase (CUUACGCUGAGUA-
CUUCGA, Eurofins MWG Operon) and nontargeting siRNA
(Thermo Fisher Scientific) as a control were used for performing
the transient transfections. As positive control for transfection, the
reagent Lipofectamine 2000 was used following the manufacturer’s
protocol. siRNA-transfection-reagent-complexes were prepared by
incubating 5 pmol siRNA with various amounts of aqueous glycine
amphiphiles depending on N/P ratios in OptiMEM (Gibco) for 30
min. Thereafter, the siRNA-transfection-reagent-complexes were
added to the cells. Both were incubated for at least 48 h at 37 °C
and 5% CO2. Samples were taken after transfection for RNA extraction
or luciferase assays.
RNA isolation was performed with the NucleoSpin RNA XS Kit
(Macherey-Nagel). Determination of RNA quality and RT-qPCR
assays were performed as described previously42 and the normalization
of the gene of interest (GAPDH; Gene ID: 2597; forward: 5′-
CCATCTTCCAGGAGCGAGAT-3′; reverse: 5′-CTAAG-
CAGTTGGTGGTGCAG-3′) was performed using geNorm.43 In
t h i s s t u d y B 2 M ( G e n e I D : 5 6 7 ; f o r w a r d : 5 ′ -
TGCTGTCTCCATGTTTGATGTATCT-3′; reverse: 5′-
TCTCTGCTCCCCACCTCTAAGT-3′), SDHA (Gene ID: 6389;
forward: 5′-TGGGAACAAGAGGGCATCTG-3′; reverse: 5′-CCAC-
CACTGCATCAAATTCATG-3′), and ACTB (Gene ID: 60; forward:
5′-GGACTTCGAGCAAGAGATGG′3; reverse: 5′-AGCACTGTG
TTGGCGTACAG-3′) were used as housekeeping genes.
For normalization of luciferase assays, cells were treated with
Calcein AM (Sigma Aldrich) to quantify the amount of viable cells.
After uptake of Calcein AM by living cells and acetoxymethyl ester
hydrolysis by cellular esterases, fluorescence is detected only in viable
cells, which enables the estimation of cell viability in a population. For
this purpose, the cell culture medium was removed and cells were
washed with PBS (PAA) and incubated with fresh medium containing
4 mM Calcein AM for 30 min at 37 °C and 5% CO2. After removal of
medium 100 μL PBS per well were added and fluorescence was
measured by excitation at 485 nm and acquiring the emission at 520
nm using the FLUOStar OPTIMA (BMG Labtech). An additional
washing step with PBS was done and 20 μL of lysis-juice (PJK GmbH)
per well was added. Measuring of luciferase activity was performed
according to the manufacturer’s manual.
In Vivo Toxicity. Three BALB/c mice per group were treated
intravenously (i.v.) with 8, 20, and 40 mg/kg G2-octaamine (4)
complexed with nontargeting siRNA (ON-TARGETplus Nontargeting
siRNA #1, Dharmacon) at N/P ratios of 50, 70, and 100, respectively.
HiPure water was administered i.v. as control. Retrobulbar blood was
taken 1 h after administration. Cytokine levels in the blood were
evaluated using the Meso Scale Discovery Multi-Spot Assay System,
Mouse ProInflammatory 7-Plex Assay Ultra-Sensitive Kit.
Synthesis of Compounds 5−8. The synthesis of compounds 5,
6, 7, and 8 were performed according to our previous report.44
General Procedure for the Esterification of Compounds 8
and 13. N-boc glycine (2.66 mmol), 4-(dimethylamino)pyridine
(20.0 mg), and the relavent compounds 8 (0.332 mmol) and 13
(0.166 mmol) were dissolved in 15 mL of DMF and cooled to 0 °C
under ice bath. l-Ethyl-3-[3-(dimethylamino) propyl]carbodiimide
hydrochloride (EDCI, 2.66 mmol) along with a few drops of triethyl
amine were added and the reaction mixture was stirred first at 0 °C for
2 h and then at room temperature, overnight. The solution was
concentrated to dryness in vacuum, and the residue was taken up in
chloroform (25 mL) and water (5 mL). The organic layer was
separated, washed with saturated sodium bicarbonate (2 × 15 mL) and
water (2 × 15 mL), and dried over MgSO4. The solvent was removed
in vacuum, and the products 9 and 14 were purified by column
chromatography (chloroform/methanol, 95:5) as viscous oils.
Compound 9. Obtained as light yellow viscous oil (318 mg, 78%
yield). 1H NMR (400 MHz, methanol-d4) δ 0.83−0.88 (3H, t, J = 8.0
Hz, −CH3), 1.24 (30H, s, methylene protons), 1.40 (36H, s,
−C(CH3)3), 1.51−1.59 (2H, m, −O−CH2CH2-), 3.24−3.28 (2H,
m), 3.45−3.50 (2H, m, PG dendron), 3.56−3.63 (3H, m, PG
dendron), 3.73 (8H, s, −CO−CH2-NHBoc), 3.86−3.93 (4H, m, PG
dendron), 4.12−4.25 (4H, m, PG dendron), 4.54 (2H, s), 5.14−5.18
(2H, m, PG dendron), 7.97−8.00 (1H, m, Triazole-H); 13C NMR
(100.5 MHz, methanol-d4) δ 15.61, 24.87, 26.39, 28.36, 29.90, 31.61,
31.78, 31.92, 34.20, 44.07, 44.19, 50.97, 63.20, 65.01, 65.77, 71.45,
72.20, 72.95, 73.17, 81.72, 126.26, 146.90, 159.46, 172.59, 172.85.
HRMS: m/z Calcd for C58H103N7O19Na: 1224.7223 [M+Na]+.
Found: 1224.7373. (For 1H and 13C NMR spectra, see the Supporting
Information.)
General Procedure for the Boc-Deprotection of Compounds
9, 14, and 15. Compounds 9, 14, and 15 (100 mg) were treated
overnight with a mixture of trifluoroacetic acid/dichloromethane
(1:3). The reaction mixture was evaporated under reduced pressure to
afford the tetra, octa, and diamino compounds 3, 4, and 16,
respectively, as viscous oils.
Compound 3. Obtained as colorless viscous oil (104 mg, quant.
1
yield). H NMR (400 MHz, methanol-d4) δ 0.87 (3H, t, J = 6.9 Hz),
1.26 (30H, s, methylene protons), 1.56−1.62 (2H, m, −O−CH2CH2-
), 3.52 (2H, t, J = 6.7 Hz), 3.58−3.65 (2H, m, PG dendron), 3.67−
3.76 (2H, m, PG dendron), 3.85 (8H, s, −CO−CH2-NHBoc), 3.87−
4.01 (5H, m, PG dendron), 4.23−4.27 (2H, m, PG dendron), 4.39−
4.41 (2H, m, PG dendron), 4.57 (2H,s), 5.23−5.31 (2H, m, PG
dendron), 7.95 (1H, s, Triazole-H); 13C NMR (100.5 MHz, methanol-
d4) δ 13.12, 22.40, 25.86, 26.40, 29.14, 29.29, 29.46, 30.37, 31.74,
35.69, 39.59, 39.71, 63.22, 63.46, 68.52, 69.85, 70.68, 71.84, 113.28
(TFA), 116.21 (TFA), 123.73, 144.72, 160.24, 160.61, 166.88, 167.08.
HRMS: m/z Calcd for C38H72N7O11: 802.5284 [M+H]+. Found:
3089
dx.doi.org/10.1021/bm300892v | Biomacromolecules 2012, 13, 3087−3098