Journal of Medicinal Chemistry
ARTICLE
final purity was determined as g95% using a C18 Vydac column
(0.46 cm ꢁ 25 cm).
(CH2), 30.4 (CH3), 33.6 (CH2), 36.6 (CH2), 54.5 (CH2), 57.4 (CH3),
62.22 (C), 80.9 (C), 119.7 (CN), 156.68 (CO), 170.3 (CO), 173.4
(CO), 176.57(CO). MS (HRMS) m/z calcd for C18H28N5O6 410.2034,
found 410.2040.
Methyl 2-(2-(tert-Butoxycarbonylamino-acetamido)-4-
cyano-2-(2-cyanoethyl-butanoate (2). To compound (1) (5.85 g,
30 mmol, 1 equiv) dissolved in 50 mL of dry DMF were added Boc-Gly
(37 mmol, 1.2 equiv), HCTU (30 mmol, 1 equiv), and DIEA (33 mmol,
1.1 equiv). After overnight stirring at room temperature under argon
atmosphere, the mixture was poured into a saturated solution of
ammonium hydrochloride. After extraction with EtOAc, the organic
phase was washed with 5% citric acid, satd NaCl, and 10% NaHCO3,
dried over MgSO4, and concentrated in vacuo leading to (2), which was
purified by silica gel chromatography EtOAc:Cy (6:4), crystallization
from EtOAc afforded (2) as a white solid, (9.8 g, 28 mmol, 92% yield); Rf
0.52 EtOAc:Cy (8:2); mp 102ꢀ103 ꢀC. 1H NMR (CDCl3) δ (ppm):
3.91 (s, 3H), 3.75 (m, 2H), 2.95 (m, 2H), 2.32 (m, 4H), 2.17 (m, 2H),
1.48 (s, 9H). 13C NMR (CDCl3) δ (ppm): 12.1 (CH2), 28.2 (CH2),
30.2 (CH3), 45.2 (CH2), 53.9 (CH3), 62.5 (C), 80.8 (C), 118.4 (CN),
156.2 (CO), 165.6 (CO), 171.7 (CO). MS (HRMS) m/z calcd for
C16H24N4O5Na 375.1644, found 375.1638.
4-(2-(tert-Butoxycarbonylamino-acetamido)-4-((2-carboxye-
thylcarbamoyl) heptane-1,7-diaminium Chloride (6). Compound
(5) (2 g, 4.8 mmol, 1 equiv) in 15 mL of MeOH:CHCl3 (5:0.15) was
reduced in the presence of PtO2 (0.228 g, 0.77 mmol, 0.16 equiv) for 2 h in a
Parr apparatus under 4 bar of H2. The suspension was filtered through Celite
and evaporated under vacuum to give (6) as a white powder (1.6 g, 3.9
mmol, 80% yield), which was used in the next step without further
purification because the NMR showed no detectable impurities; mp
1
116ꢀ117 ꢀC. H NMR (D2O) δ (ppm): 3.68 (s, 2H), 3.39 (m, 2H),
2.88 (m, 4H), 2.42 (m, 2H), 2.06 (m, 2H), 1.81 (m, 2H), 1.44 (m, 4H), 1.36
(s, 9H). 13C NMR (D2O) δ (ppm): 21.5 (CH2), 28.1 (CH3), 31.3 (CH2),
36.4 (CH2), 39.2 (CH2), 44.1 (CH2), 52.6 (CH2), 62.3 (C), 81.3 (C),
158.5 (CO), 171.2 (CO), 173.7 (CO), 175.8 (CO). MS (HRMS) m/z
calcd for C18H36N5O6 418.2660, found 418.2664.
9,9-Bis(3-(tert-butoxycarbonylamino-propyl)-2,2-dimeth-
yl-4,7,10-trioxo-3-oxa-5,8,11-triazatetradecan-14-oic Acid (7).
To a solution of (6) (10.18 g, 16.5 mmol, 1 equiv) in 80 mL of H2O:
MeCN (1:1), Boc2O (50 mmol, 3 equiv), and triethylamine (6 equiv)
were added. The solution was stirred at room temperature for 24 h. The
pH was then decreased to 3 with 1N NaHSO4. The solution was
extracted with CH2Cl2. The organic phase was dried over MgSO4 and
then concentrated in vacuo to afford an oil, which was purified by silica
gel chromatography in EtOAc:Cy:MeOH:acetic acid (50:50:2.5:1) to
afford (7) as a white solid (8.2 g, 13.2 mmol, 80% yield). Rf 0.27 EtOAc:
Cy:MeOH:acetic acid (50:46:3:1); mp 140ꢀ141 ꢀC. 1H NMR
(CDCl3) δ (ppm): 3.72 (m, 2H), 3.51 (m, 2H), 2.99 (m, 4H), 2.57
(m, 2H), 2.39 (m, 2H), 1.65 (m, 2H), 1.42 (s, 9H), 1.39 (s, 18H), 1.38
(m, 2H). 13C NMR (CDCl3) δ (ppm): 21.6 (CH2), 24.6 (CH2), 28.4
(CH3), 32.5 (CH2), 34.1 (CH2), 40.4 (CH2), 44.9 (CH2), 63.7 (C),
79.6 (C), 156.7 (CO), 169.1 (CO), 172.7 (CO), 173.4 (CO). MS
(HRMS) m/z calcd for C28H51N5O10Na 640.3534, found 640.3528.
9,9-Bis(3-(9-fluorenylmethoxy-carbonyl-aminopropyl)-2,
2-dimethyl-4,7,10-trioxo-3-oxa-5,8,11-triazatetradecan-14-
oic Acid (8). To a solution, at 0 ꢀC, of (6) (1.7 g, 4 mmol, 1 equiv) in
20 mL of H2O:MeCN (1:1) is added NaHCO3 (1.36 g, 16 mmol, 4
equiv) and dropwise Fmoc-OSu (3 g, 9 mmol, 2.2 equiv) dissolved in
6 mL of MeCN. The temperature was then raised at room temperature,
and the solution was stirred at room temperature for 24 h. The pH was
then decreased to 3 with 1N NaHSO4, and the solution was extracted
with DCM. The organic phase was dried over MgSO4 and then
concentrated in vacuo to afford an oil, which was purified by silica gel
chromatography in EtOAc:Cy:MeOH:acetic acid (50:50:2.5:1) to af-
ford (8) as a white solid (2.2 g, 2.6 mmol, 65% yield). Rf 0.35 EtOAc:Cy:
MeOH:acetic acid (50:46:3:1); mp 159ꢀ160 ꢀC. 1H NMR (CDCl3) δ
(ppm): 7.75 (m, 4H), 7.58 (m, 4H), 7.39 (m, 4H), 7.31 (m, 4H), 4.35
(d, J 8 Hz, 4H), 4.19 (m, 2H), 3.75 (m, 2H), 3.53 (m, 2H), 3.13 (m, 4H),
2.59 (m, 2H), 2.47 (m, 2H), 1.64 (m, 2H), 1.44 (s, 9H), 1.40 (m, 2H),
1.27 (m, 2H). 13C NMR (CDCl3) δ (ppm): 24.4 (CH2), 28.6 (CH3),
32.8 (CH2), 33.7 (CH2), 36.21 (CH2), 40.86 (CH2), 44.85 (CH), 63.59
(CH2), 80.6 (C), 120.1 (CH-Ar), 125.2 (CH-Ar), 127.34 (CH-Ar),
129.15 (CH-Ar), 141.4 (CꢀAr), 143.8 (CꢀAr), 157.2 (CO), 172.5
(CO), 172.86 (CO), 174.76 (CO). MS (HRMS) m/z calcd for
C48H56N5O10 862.4022, found 862.4036.
2-(2-(tert-Butoxycarbonylamino-acetamido)-4-cyano-2-
(2-cyanoethyl) Butanoic Acid (3). A solution of (2) (8.8 g, 25
mmol, 1 equiv) in THF (100 mL) was treated by slow addition of
25 mL of LiOH 2N (51 mmol, 2 equiv). The solution was stirred for 1
h, and a solution of NaHSO4 (1N) was added until pH 3. The product
was extracted using EtOAc, and the organic phase was dried over
MgSO4 and concentrated in vacuo to afford (3) as a white solid (8 g,
24 mmol, 95% yield). Rf 0.38 DCM:MeOH:CH3COOH (8:2:0.1);
mp 74ꢀ75 ꢀC. 1H NMR (CDCl3) δ (ppm): 3.88 (m, 2H), 2.96 (m,
2H), 2.37 (t, J 8 Hz, 4H), 2.23 (m, 2H), 1.46 (s, 9H). 13C NMR
(CDCl3) δ (ppm): 12.2 (CH2), 28.4 (CH2), 30.1 (CH3), 45.3 (CH2),
53.9 (CH3), 64.5 (C), 80.8 (C), 118.4 (CN), 156.2 (CO), 158.2 (CO),
171.2 (CO). MS (HRMS) m/z calcd for C15H22N4O5Na 361.1488,
found 361.1482.
Methyl 9,9-Bis(2-cyanoethyl)-2,2-dimethyl-4,7,10-trioxo-
3-oxa-5,8,11-triazatetradecan-14-oate (4). To a solution of
(3) (4 g, 12 mmol, 1 equiv), β-Ala-OMe (14 mmol, 1.2 equiv), and
BOP (12 mmol, 1 equiv) in 24 mL of dry DMF was added DIEA (24
mmol, 2 equiv). After overnight stirring at room temperature under
argon atmosphere, the mixture was poured into a saturated solution of
ammonium hydrochloride. After extraction with EtOAc, the organic
phase was washed with 5% citric acid, satd NaCl, and 10% NaHCO3.
The organic phase was dried over MgSO4 and concentrated under
vacuum to yield compound (3) as an oil, which was purified by silica gel
chromatography, EtOAc:Cy (6:4), leading to an oil, which was crystal-
lized in EtOAc to afford (4) as white crystals (4.3 g, 10 mmol, 85%
yield); Rf 0.56 EtOAc:Cy (8:2); mp 138ꢀ139 ꢀC. 1H NMR (CDCl3) δ
(ppm): 3.75 (m, 2H), 3.71 (s, 3H), 3.57 (q, 2H), 3.01 (m, 2H), 2.61 (t,
2H), 2.27 (m, 4H), 1.92 (m, 2H), 1.46 (s, 9H). 13C NMR (CDCl3) δ
(ppm): 12.1 (CH2), 28.3 (CH2), 30.9 (CH3), 32.85 (CH2), 36.05
(CH2), 52.2 (CH2), 52.2 (CH3), 61.9 (C), 80.7 (C), 118.9 (CN),
160.63 (CO), 169.63 (CO), 169.76 (CO), 173.34 (CO). MS (HRMS)
m/z calcd for C19H29N5O6Na 446.2010, found 446.2017.
9,9-Bis(2-cyanoethyl)-2,2-dimethyl-4,7,10-trioxo-3-oxa-5,
8,11-triazatetradecan-14-oic Acid (5). To a solution of (4) (6.38
g, 16 mmol, 1 equiv) in THF:MeOH (5:1) cooled at 4 ꢀC, LiOH (2N)
(20 mL, 40 mmol, 2.5 equiv) was added dropwise. After stirring 25 min at
4 ꢀC, the reaction was quenched by addition of water and decreasing the
pH to 3 with a 1N NaHSO4 solution. After extraction with EtOAc (5ꢁ),
the organic phases were assembled, dried over MgSO4, and concentrated
in vacuo to yield the pure compound (5) as a white solid (5.9 g, 14 mmol,
90% yield). Rf 0.45 DCM:MeOH:CH3COOH (8:2:0.1); mp
124ꢀ125 ꢀC. 1H NMR (MeOD) δ (ppm): 3.69 (s, 2H), 3.52 (t, J 3.5
Hz, 2H), 2.77 (m, 2H), 2.61 (t, J 2.6 Hz, 2H), 2.39 (m, 4H), 2.17 (m,
2H), 1.49 (s, 9H). 13C NMR (CDCl3) δ (ppm): 12.1 (CH2), 28.3
Azidoacetic Acid. To a solution of sodium azide (8.2 g, 126 mmol,
2 equiv) in 42 mL of water bromoacetic acid (10 g, 63 mmol, 1 equiv)
was slowly added. The solution was stirred at room temperature
overnight. The reaction was then quenched by dropwise addition of
35 mL of conc HCl (37%). After extraction with Et2O (4 ꢁ 50 mL), the
organic phase was dried over MgSO4 and concentrated in vacuo to
afford azidoacetic acid as an oil (59 mmol, 95% yield). 1H NMR
7381
dx.doi.org/10.1021/jm2009937 |J. Med. Chem. 2011, 54, 7375–7384