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X.-P. Dai et al. / Journal of Molecular Structure 1035 (2013) 203–208
Table 1
Crystallographic data for 1–2.
the construction of co-crystals [17–19]. However, the hydrogen
bonding driven organic co-crystals based on asymmetric pyrimi-
dine derivatives have not been received much attention [20]. Thus
the inclusion of different functional groups, such as pyrimidine,
pyridine and imidazole, may lead to the different and patentable
co-crystals with versatile structures and potential properties.
In addition, some aromatic carboxylic acids as hydrogen-bond
donors have been selected to investigate hydrogen-bond topology
and dimensionality [21,22]. In this study, we report two novel co-
crystals, namely [(A) (isophthalic acid)] (1) and [(B) (isophthalic
acid)] (2) based on A, B with isophthalic acid.
Compound
1
2
Empirical formula
CCDC Deposit no.
Color/shape
Formula weight
Temperature (K)
Crystal system
Space group
a (Å)
(C9H7N3)ꢁ(C8H6O4)
875334
Yellow, block
323.30
(C13H10N4)ꢁ(C8H6O4)
855281
Colorless, plan
388.38
298(2)
Monoclinic
P21/c
10.5685(19)
13.080(2)
13.537(2)
90
104.649(3)
90
1810.5(6)
4
1.425
298(2)
Triclinic
P1ꢀ
6.6918(16)
7.4746(18)
16.150(4)
80.283(4)
88.014(3)
68.827(3)
742.2(3)
2
b (Å)
c (Å)
a
(°)
b (°)
2. Experimental
c
(°)
Volume (Å3)
2.1. Materials and methods
Z
q
l
calc. (g/cm3)
(Mo K
) (mmꢀ1
1.447
0.106
336
A and B was prepared according to a literature [23]. Infrared (IR)
samples were prepared as KBr pellets, and spectra were obtained
in the 400–4000 cmꢀ1 range using a Bruker tensor-27 FTIR spec-
trometer. 1H NMR data were collected using a Bruker Avance-
400 spectrometer. Chemical shifts were reported in d relative to
TMS. Elemental analyses were performed on a Perkin–Elmer Model
240c analyzer. All fluorescence measurements were carried out on
a Cary Eclipse Spectrofluorimeter (Varian, Australia) equipped with
a xenon lamp and quartz carrier at room temperature. XRD pattern
were obtained on a Rigaku D/Max-rB X-ray powder diffraction
a
)
0.102
808
F(000)
Limiting indices
ꢀ7 6 h 6 8, ꢀ9 6 k 6 8, ꢀ12 6 h 6 10,
ꢀ19 6 l 6 19
ꢀ15 6 k 6 15,
ꢀ15 6 l 6 16
0.30 ꢂ 0.22 ꢂ 0.08
1.99–25.50
Crystal size (mm)
Theta range for data
collection (°)
Completeness to h
Reflections collected
Independent
0.30 ꢂ 0.14 ꢂ 0.06
2.56–25.49
98.2%
3916
2705 [R(int) = 0.0274]
99.7%
9348
3357 [R(int) = 0.0472]
reflections
Data/restraints/
parameters
2705/0/219
3357/0/263
(XRD) with Cu Ka radiation (k = 1.5405 & Aring). The yields were
calculated from the crystalline samples after removal of the solvent
under vacuum and the molar amounts initially introduced.
Goodness-of-fit on F2 1.061
1.106
Final R indices
[I > 2sigma(I)]
R indices (all data)
R1 = 0.0524,
R1 = 0.0725, wR2 = 0.1456
wR2 = 0.1326
R1 = 0.0634,
wR2 = 0.1419
R1 = 0.1148, wR2 = 0.1628
0.182 and ꢀ0.230
2.2. Preparation of co-crystals 1–2
Largest diff. peak and 0.189 and ꢀ0.247
hole e.Åꢀ3
A CH2Cl2 and CH3CN solution (10 mL, 1:1, v/v) of A (15.7 mg,
0.1 m mol) with isophthalic acid (16.6 mg, 0.1 m mol) or
B
P
P
P
P
2
2
1=2
a R1
¼
jjFoj ꢀ jFcjj= jFoj. wR2 ¼ f ½wðF2oÞ ꢀ Fc2Þ ꢃ= ½wðFo2Þ ꢃg
.
(22.2 mg, 0.1 m mol) with isophthalic acid (16.6 mg, 0.1 m mol),
was kept at room temperature. Upon slow evaporation of the sol-
vent about 5 days, colorless crystals 1–2 were obtained,
respectively.
radiation, k = 0.71073 Å). The raw frame data for 1–2 were inte-
grated into SHELX-format reflection files and corrected for Lorentz
and polarization effects using SAINT [24]. None of the crystals
showed evidence of crystal decay during data collection. All struc-
tures were solved by a combination of direct methods and differ-
ence Fourier syntheses and refined against F2 by the full-matrix
least squares technique. Crystal data, data collection parameters,
and refinement statistics for 1, 2 are listed in Table 1. Relevant
hydrogen-bonding geometries for 1–2 are shown in Table 2.
2.2.1. Co-crystal 1
Yield: 80%. IR (KBr Pellet cmꢀ1): 3076(s), 2814(s), 2457(br),
1880(br), 1705(s), 1603(s), 1575(s), 1415(s), 1281(s), 1254(s),
1188(s), 1070(s), 999(m), 827(s), 725(s). 1H NMR (400 MHz, DMSO,
25 °C, TMS, ppm): 13.26 (s, 2H, –COOH), 9.29 (d, 3H, –C4H3N2), 8.74
(d, 2H, –C5H4N), 8.48 (s, 1H, –C6H4), 8.17 (d, 2H, –C6H4), 7.89 (d, 2H,
–C5H4N), 7.64 (m, 1H, –C6H4). Elemental analysis (%) calcd. for
C17H13N3O4 (323.30): C 63.15, H 4.05, N 12.99; Found: C 63.43, H
4.01, N 12.78.
3. Results and discussion
2.2.2. Co-crystal 2
3.1. Structural analysis
Yield: 85%. IR (KBr Pellet cmꢀ1): 3133(s), 2493(br), 1891(br),
1704(s), 1613(m), 1529(m), 1402(s), 1322(s), 1280(s), 1118(s),
1056(s), 828(s), 760(s), 733(m), 683(m). 1H NMR (400 MHz, DMSO,
25 °C, TMS, ppm): 13.32 (s, 2H, –COOH), 9.22 (d, 3H, –C4H3N2), 8.49
(s, 1H, –C6H4), 8.40 (s, 1H, –C3H3N2), 8.18 (d, 2H, –C6H4), 7.98 (d,
2H, –C6H4), 7.87 (m, 1H, –C3H3N2, 2H, –C6H4), 7.66 (m, 1H, –
C6H4), 7.16 (s, 1H, –C3H3N2). Elemental analysis (%) calcd. for
3.1.1. Co-crystal [(A) (isophthalic acid)] (1)
Single-crystal structure reveals that co-crystal 1 exhibits an 1:1
stoichiometric ratio of components, corresponding to the formula
(A) (isophthalic acid) (Fig. 1). In 1, the desired O–Hꢁ ꢁ ꢁN (O(2)–
H(2A)ꢁ ꢁ ꢁN(1) and O(3)–H(3)ꢁ ꢁ ꢁN(2)) hydrogen bonding systems
are formed between A and isophthalic acid into a zigzag chain with
a C22(16) motif extended along the crystallographic [01ꢀ1] axes
(Fig. 2a). In A molecule, pyrimidyl and pyridyl groups are not fully
coplanar, and the dihedral angle between them is approximately
23.8°.
C21H16N4O4 (388.37): C 64.94, H 4.15, N 14.42; Found: C 64.56, H
4.34, N 14.67.
2.3. Single-crystal structure determination
In the solid state, adjacent chains are connected to each other
through weak interchain C(9)–H(9)ꢁ ꢁ ꢁO(4) [25,26] hydrogen bonds
into a H-bonding-driven parquet-like network extended in the
crystallographic ac plane (Fig. 2b). The parquet-like grid displays
Suitable single crystals of 1–2 were selected and mounted in air
onto thin glass fibers. X-ray intensity data of 1–2 were measured at
293 K on a Bruker SMART APEX CCD-based diffractometer (Mo K
a