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94:4:2) with an LH20 exclusion column (DCM/MeOH 50:50).Yield:
40%.
71. 81−71.91 (1C, CH, glycerol), 76.99 (1C, 4′ sugar), 83.24 (1C, 3′
sugar), 86.69 (1C, 1′ sugar), 111.68 (1C, base), 128.07−130.58 (5C,
aromatic Phe), 136.63 (1C, aromatic Phe), 136.72 (1C, base), 152.10
(1C, CO base), 165.14 (1C, CO base), 170.76 (1C, ester, AA),
173.65 (1C, ester), 173.81 (1C, ester). 31P NMR (121 MHz, pyridine-
d5): δ 2.03. ESI-HRMS: Mw = 964.172, [M + Na]+ = 986.5477.
Thymidine 3′-(1,2-Dioleoyl-sn-glycero-3-phosphate)-5′-(Phenyl-
alanine), diC18:1-dT-Phe, Compound 3b. Thymidine 3′-(1,2-
Dioleoyl-sn-glycero-3-phosphate)-5′-(Phenylalanine-Boc) (0.288g, 1
equiv, 0.246 mmol) was dissolved in 6 mL of a trifluoracetic (50%)/
dichloromethane (50%) mixture for 4 h. The product was purified
with an LH20 exclusion column (DCM/MeOH 50:50). Yield: 94%.
1H NMR (300 MHz, DMSO-d6): δ 0.82−0.90 (m, 6H, CH3, chain),
1.20−1.36 (m, 40H, 2CH2, chain), 1.46−1.57 (m, 4H, 2CH2, chain),
1.81 (s, 3H, CH3, base), 1.92−2.03 (m, 8H, chain), 2.19−2.42 (m, 6H,
2CH2, chain + 2H, 2′ sugar), 3.83−4.39 (m, 8H, 2CH2, glycerol + 1H,
4′ + 2H, 5′ sugar + H, CH2, Phe), 4.69−4.77 (m, 1H, 3′ sugar), 5.06−
5.16 (m, 1H, glycerol), 5.27−5.38 (m, 4H, CHCH, chain), 6.09−
6.17 (m, H, 1′ sugar), 7.23−7.35 (m, 5H, aromatic, Phe, aromatic),
7.46 (1H, base). 13C NMR (75 MHz, DMSO-d6): δ 12.24 (1C, CH3,
base), 14.02 (2C, CH3, chain), 22.63 (2C, chain), 24.84 (2C, chain),
27.21 (4C, chain), 29.09−29.73 (14C, chain), 31.87 (4C, chain), 33.70
(1C, CH2, Phe), 34.02−34.19 (2C, chain), 36.30 (1C, 2′ sugar), 54.50
(1C, CH, Phe), 62.56 (1C, glycerol), 63.93 (1C, glycerol), 70.28 (1C,
glycerol), 79.99 (1C, 3′ sugar), 81.67 (1C, 1′ sugar), 111.19 (1C,
base), 127.52−130.01 (9C, 2 CHCH, chain + 5, aromatic, Phe),
134.10 (1C, aromatic, Phe), 138.10 (1C, base), 150.29 (1C, CO,
base), 163.84 (1C, CO, base), 167.89 (1C, ester, AA), 173.01 (1C,
ester), 173.31 (1C, ester). 31P NMR (121 MHz, DMSO-d6): δ 1.38.
ESI-HRMS: Mw = 1072.353, [M]+ = 1072.6564.
Preparation of the Samples. Sample solutions are prepared by
weighting the dry compounds and adding the buffer (HEPES 50 mM,
pH 7.2) to obtain the requested concentration (5 mM). The mixture
was stirred overnight at room temperature, followed by several cycles
of heating (50 °C during 1 min), and vigorous mixing (for 5 min) was
performed for 30 min. The homogeneity of the sample is checked
visually, and the dispersions are systematically characterized using
complementary techniques.
Cryo-TEM. Specimens for cryo-TEM observation were prepared
using a cryoplunge cryo-fixation device (Gatan, USA) in which a drop
of the aqueous solution was deposited onto glow-discharged holey-
type carbon-coated grids (Ted Pella Inc., USA). The TEM grid was
then prepared by blotting the drop containing the specimen to a thin
liquid layer, spanning across the holes in the support carbon film. The
liquid film was vitrified by rapidly plunging the grid into liquid ethane
cooled by liquid nitrogen. The vitrified specimens were mounted in a
Gatan 910 specimen holder (Gatan, USA) that was inserted in the
microscope, using a CT-3500-cryotransfer system (Gatan, USA) and
cooled with liquid nitrogen. TEM images were then obtained from
specimens preserved in vitreous ice and suspended across a hole in the
supporting carbon substrate. The samples were observed under low
dose conditions (<10 e−/Å2), at −178 °C, using a JEM-1230 “Cryo”
microscope (Jeol, Japan) operated at 80 kV and equipped with a LaB6
filament. All micrographs were recorded with a Gatan 1.35 K × 1.04 K
× 12 bit ES500 W CCD camera.
1H NMR (300 MHz, CDCl3): δ 0.85−0.91 (m, 6H, CH3, chain),
1.23−1.43 (m, 58H, 20CH2, chain + 9H, 3CH3, TEA + 9H, 3CH3,
Boc), 1.55−1.64 (m, 4H, 2CH2, chain), 1.92 (s, 3H, CH3, base),
1.94−2.04 (m, 3H, 1H, 2′ sugar + 2H, CH2, Phe), 2.24−2.34 (m, 4H,
2CH2, chain), 2.46−2.52 (m, 1H, 2′ sugar), 3.03−3.14 (m, 6H, 3CH2,
TEA), 3.96−4.02 (m, 2H, CH2, glycerol), 4.12−4.19 (m, 1H, CH2,
glycerol), 4.33−4.71 (m, 5H, 1H, CH2, glycerol + 1H 3′ + 1H 4′ + 2H,
5′ sugar), 5.09−5.15 (m, 1H, CH, Phe), 5.22−5.29 (m, 1H, glycerol),
6.25−6.31 (m, H, 1′ sugar), 7.12−7.27 (m, 5H, Phe, aromatic), 8.39
(s, 1H, base). 13C NMR (75 MHz, CDCl3): δ 8.61 (3C, 3CH3, TEA),
12.55 (1C, CH3, base), 14.15 (2C, CH3, chain), 22.72 (2C, chain),
24.88 (2C, chain), 28.26 (3C, 3CH3, Boc), 29.16−29.68 (14C, chain),
31.94 (4C, chain), 34.09−34.29 (2C, chain), 38.41 (1C, 2′ sugar),
45.71 (3C, 3CH2, TEA), 54.77 (1C, CH2, Phe), 62.66 (1C, glycerol),
63.62 (1C, glycerol), 65.07 (1C, CH, Phe), 70.28 (1C, glycerol), 74.98
(1C, 4′ sugar), 80.06 (1C, 3′ sugar), 84.95 (1C, 1′ sugar), 111.38 (1C,
base), 127.17−129.27 (5C, aromatic, Phe), 135.16 (1C, base), 135.84
(1C, aromatic, Phe), 150.02 (1C, CO, base), 154.98 (1C, CO,
Boc), 163.41 (1C, CO, base), 171.84 (1C, ester, AA), 173.09 (1C,
ester), 173.50 (1C, ester). 31P NMR (121 MHz, CDCl3): δ 1.97
Thymidine 3′-(1,2-Dioleoyl-sn-glycero-3-phosphate)-5′-(Phenyl-
alanine-Boc), diC18:1-dT-Boc-Phe, Compound 2b. Thymidine 3′-
(1,2-Dioleoyl-sn-glycero-3-phosphate) (0.3g, 1 equiv, 0.325 mmol)
and Boc-Phe-OH (0.172 g, 2 equiv, 0.65 mmol) were dissolved in 10
mL of dry DCM under argon; DCC (0.134 g, 2 equiv, 0.65 mmol) and
DMAP (0.02 g, 0.5 equiv, 0.163 mmol) were added, and the reaction
mixture was stirred overnight at room temperature. The dicyclohex-
ylurea was then filtered, and the solvent was evaporated under high
vacuum. The product was purified on silica gel (DCM/MeOH/TEA
from 98:1:1 to 95:4:1). Yield: 75%.
1H NMR (300 MHz, CDCl3): δ 0.84−0.91 (m, 6H, CH3 chain),
1.22−1.42 (m, 58H, 20CH2, chain + 9H, 3CH3, TEA + 9H, 3CH3,
Boc), 1.53−1.64 (m, 4H, 2CH2, chain), 1.91 (s, 3H, CH3, base), 1.96−
2.04 (m, 8H, chain), 2.24−2.34 (m, 4H, 2CH2, chain), 2.43−2.52 (m,
1H, 2′ sugar), 3.03−3.13 (m, 6H, 3CH2, TEA), 3.96−4.72 (m, 9H,
2CH2, glycerol +1H, 4′ + 2H, 5′ sugar + 2H, CH2, Phe), 5.09−5.15
(m, 1H, 3′ sugar), 5.21−5.30 (m, 1H, glycerol), 5.30−5.39 (m, 4H,
CHCH chain), 6.25−6.32 (m, H, 1′ sugar), 7.12−7.27 (m, 6H, 5H,
Phe, aromatic + 1H, base). 13C NMR (75 MHz, CDCl3): δ 8.59 (3C,
3CH3, TEA), 12.55 (1C, CH3, base), 14.14 (2C, CH3, chain), 22.69
(2C, chain), 24.86 (2C, chain), 27.23 (4C, chain), 28.26 (3C, 3CH3,
Boc), 29.13−29.76 (14C, chain), 31.91 (4C, chain), 34.06−34.24 (2C,
chain), 38.40 (1C, 2′ sugar), 45.70 (3C, 3CH2, TEA), 54.79 (1C, CH2,
Phe), 62.66 (1C, glycerol), 63.65 (1C, glycerol), 65.0 (1C, CH, Phe),
70.28 (1C, glycerol), 74.98 (1C, 4′ sugar), 80.03 (1C, 3′ sugar), 84.81
(1C, 1′ sugar), 111.41 (1C, base), 127.16−130.01 (9C, 2 CHCH,
chain + 5, aromatic, Phe), 135.13 (1C, base), 135.89 (1C, aromatic,
Phe), 150.21 (1C, CO, base), 154.91 (1C, CO, Boc), 163.64
(1C, CO, base), 171.83 (1C, ester AA), 173.04 (1C, ester), 173.44
(1C, ester). 31P NMR (121 MHz, CDCl3): δ 1.81.
Thymidine 3′-(1,2-Dimyristoyl-sn-glycero-3-phosphate)-5′-(Phe-
nylalanine), diC14-dT-Phe, Compound 3a. Thymidine 3′-(1,2-
Dimyristoyl-sn-glycero-3-phosphate)-5′-(Phenylalanine-Boc) (0.200g,
1 equiv, 0.188 mmol) was dissolved in 6 mL of a trifluoracetic (50%)/
dichloromethane (50%) mixture for 4 h. The product was purified
with an LH20 exclusion column (DCM/MeOH 50:50). Yield: 96%.
1H NMR (300 MHz, pyridine-d5): δ 0.89−0.96 (m, 6H, CH3,
chain) 1.20−1.38 (m, 40H, 2CH2, chain) 1.66−1.77 (m, 4H, 2CH2,
chain), 1.99 (s, 3H, CH3, base), 2.39−2.50 (m, 4H, 2CH2, chain),
2.74−2.81 (m, 2H, 2′ sugar), 3.57−3.63 (m, 2H, CH2, Phe), 4.48−
4.85 (m, 8H, 2CH2, glycerol + 1H, 4′ + 2H, 5′ sugar + H, CH2, Phe),
5.43−5.50 (m, 1H, 3′ sugar), 5.72−5.79 (m, 1H, glycerol), 6.68−6.76
(m, H, 1′ sugar), 7.26−7.56 (m, 6H, 5H, aromatic, Phe, aromatic +
1H, base). 13C NMR (75 MHz, pyridine-d5): δ 13.02 (1C, CH3, base),
14.69 (2C, CH3, chain), 23.38 (2C, chain), 25.79 (2C, chain), 29.80−
30.60 (14C, chain), 32.60 (4C, chain), 34.78−35.01 (2C, chain),
38.44−38.66 (2C, CH2, Phe + 2′ sugar), 56.16 (1C, CH, Phe), 63. 65
(1C, CH2, glycerol), 64.87 (1C, CH2, glycerol), 65.28 (1C, 5′ sugar),
Dynamic Light Scattering (DLS). DLS experiments have been
performed with a Brookhaven Instruments apparatus (BI 9000AT
digital correlator). The signal was detected by a photomultiplier tube,
set at 90° with respect to the incident beam on the sample. The
pinhole was set at 150 μm. The light source was a diode laser (532
nm), linearly polarized in the vertical direction. A 3 min acquisition
time was used for each measurement. The experiments were
performed at 20 °C. The tubes were immersed in a thermostatted
bath of Decalin (decahydronapthalene), necessary for index matching.
The time autocorrelation functions of the scattered light intensity were
collected and analyzed by a cumulant analysis.
X-ray Experiments. Once prepared, samples were carefully
transferred at room temperature into sealed quartz capillaries. High-
flux and high-resolution X-ray experiments were carried out on the
SWING beamline at the synchrotron facility SOLEIL near Paris,
5549
dx.doi.org/10.1021/la400515m | Langmuir 2013, 29, 5547−5555