Angewandte
Chemie
To scrutinize why the change of disulfide bonds to the
thioether and biscarba surrogates caused significant devia-
tions from the b-hairpin structure, we measured the dihedral
angles of the cross-strand bridges in the NMR structures. For
TPI-1, the dihedral angles between the C–S–S–C atoms were
94.28 (inner bridge) and 97.28 (outer bridge) degrees,
respectively. This observation was consistent with the notion
that the dihedral angle of the disulfide bond in proteins is
usually close to 908.[16] The dihedral angles of the two bridges
in TPI-2 were 59.08 (inner) and 174.78 (outer), whereas for
TPI-3 the values were 49.48 (inner) and 143.18 (outer). Such
large changes of dihedral angles may indicate that the
À
À
different patterns of torsional strain among the S S, C C,
À
and S C bonds led to the variation of the global conforma-
tion.
One possible solution to alleviate the above problem was
to use only one disulfide surrogate in the TPI-1 analogues. It is
also interesting to learn which of the two disulfide bonds in
TPI-1 was more important for maintaining the b-hairpin
structure. Thus we designed and synthesized TPI-1 analogues
with only the inner or outer disulfide bond replaced by one
biscarba or thioether bridge (TPI-4 to TPI-7, Table 1). To test
whether or not the orientation of the thioether bond exerted
any significant effect, we also prepared TPI-8 and TPI-9
(Table 1). Our measurements revealed that the MIC values of
TPI-4 to TPI-9 were fairly close to each other. These values
were more resembling to those of TPI-1, thereby suggesting
that TPI-4 to TPI-9 were more active than TPI-2 or TPI-3. In
particular, the activity of the thioether-bridged TPI-9 was
identical to that of TPI-1 for four strains of bacteria (i.e.
Bacillus subtilis, Staphylococcus epidermidis, Pseudomonas
aeruginosa, and Escherichia coli). Thus the installation of only
one disulfide surrogate indeed caused less activity change
than the replacement of two disulfide bonds. Unfortunately,
our data did not give a clear hint concerning the relative
importance of the inner versus outer disulfide bridges.
To examine the structural distortion owing to the instal-
lation of disulfide surrogates, we measured the backbone Ha
and amide H(N) chemical shifts of TPI-1 to TPI-9. Because
the proton chemical shift value is sensitive to the chemical
environments around the proton, the change of these values
from the parent compound to its analogues may reflect the
extent of structural variation. In our NMR experiments,
proton assignments were achieved for seven peptides (TPI-1,
2, 3, 4, 5, 7, and 9). The root-mean-square deviations of the
backbone Ha chemical shifts of 16 residues for TPI-2, 3, 4, 5,
7, and 9 (Figure 4a; note: Lys1 was exposed to the solvent
molecules and subject to fast proton exchange) were found to
be 0.58, 0.49, 0.40, 0.51, 0.15, 0.37 ppm. Moreover, the root-
mean-square deviations of the backbone amide H(N) chem-
ical shifts of 16 residues for TPI-2, 3, 4, 5, 7, and 9 (Figure 4b)
were 0.56, 0.56, 0.32, 0.52, 0.13, 0.31 ppm, respectively. Thus,
the structures of TPI-4, 7, and 9 were more similar to the
structure of TPI-1 than to TPI-2 and 3. This observation
confirmed our expectation that the installation of only one
disulfide surrogate caused less structural changes than the
replacement of two disulfide bonds.
Figure 4. The chemical shift differences of backbone Ha (a) and
amide H(N) (b) between the wild-type peptide (TPI-1) and modified
peptides (TPI-2, 3, 4, 5, 7, and 9). DAD=diaminodiacid.
of peptide disulfide bond mimics with two cross-linking
bridges. With the b-hairpin antimicrobial peptide tachyple-
sin I as a model, we showed that the diaminodiacid strategy
can readily generate the desired disulfide surrogates with
good yields and reliable structural control. Both the CD and
NMR spectroscopy studies indicated that the biscarba and
thioether-containing TPI-1 analogues did not adopt the
authentic b-hairpin structure owing to the disruption of
interstrand hydrogen bonding. Nonetheless, these analogues
were still effective antimicrobial peptides, thus indicating that
the overall hairpin-like shape, rather than the details of the b-
sheet conformation, dominated the bioactivity of these
compounds. More detailed analysis showed that the dihedral
angles of the disulfide, biscarba, or thioether bridges in TPI-
1 analogues varied dramatically, thereby indicating that the
À
À
À
different torsional strains of the S S, C C, and S C bonds
may cause the structural distortions. Thus, to pinpoint the
optimal peptide disulfide bond mimics, it is important to make
and screen an array of disulfide bond surrogates ideally with
high structural diversity. Although the present study has only
examined the biscarba- and thioether-based bridges, we
expect that the preparation and use of diverse structures of
diaminodiacids would be practical.
Received: March 15, 2013
Revised: April 28, 2013
Published online: June 26, 2013
Keywords: biological activity · cyclic peptides · disulfide bonds ·
.
b-hairpin structure · solid-phase synthesis
[1] a) D. Obrecht, E. Chevalier, K. Moehle, J. A. Robinson, Drug
Taft, P. F. Alewood, Curr. Top. Med. Chem. 2012, 12, 1514.
To summarize, we examined for the first time the use of
a diaminodiacid-based strategy for the solid-phase synthesis
Angew. Chem. Int. Ed. 2013, 52, 9558 –9562
ꢀ 2013 Wiley-VCH Verlag GmbH & Co. KGaA, Weinheim
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