Journal of Medicinal Chemistry
Article
N-Benzyl-Ala-OH (25). Ala-Ot-Bu·HCl (0.43 g, 2.4 mmol, 1.2
equiv) and benzaldehyde (0.2 mL, 2.0 mmol, 1 equiv) were dissolved
in CHCl3 (10 mL), followed by addition of a solution of NaBH(OAc)3
(0.63 g, 3 mmol, 1.5 equiv) in CHCl3 (5 mL). The reaction mixture
was stirred at rt for 12 h, water (20 mL) was added, and the aqueous
layer was separated and extracted with additional CHCl3 (2 × 20 mL).
The combined CHCl3 layers were washed with water (20 mL) and
dried over MgSO4, and the solvent was evaporated to obtain the
product, which was purified by flash silica gel column chromatography
(15% EtOAc/hexane) to give N-benzyl-Ala-Ot-Bu (220 mg, 39%) as a
white semisolid: ESI-MS m/z [M + H]+ 236.1651 (calcd), 236.1628
(observed); HPLC: tR 13.1 min (purity 95.8%); 1H NMR (500 MHz,
CDCl3) δ 7.39−7.23 (m, 5H), 3.82 (d, J = 12.7 Hz, 1H), 3.68 (d, J =
12.7 Hz, 1H), 3.27 (q, J = 7.0 Hz, 1H), 1.86 (s, 1H), 1.51 (s, 9H), 1.30
(d, J = 7.0 Hz, 3H); 13C NMR (126 MHz, CDCl3) δ 175.37, 140.14,
128.59, 128.45, 127.19, 81.07, 56.86, 52.15, 28.29, 19.35.
J = 13.0 Hz, 1H), 3.73 (d, J = 13.0 Hz, 1H), 3.51 (dd, J = 7.6 and 6.6
Hz, 1H), 3.00 (dd, J = 13.6 and 6.5 Hz, 1H), 2.91 (dd, J = 13.6 and 7.7
Hz, 1H), 1.35 (s, 9H); 13C NMR (126 MHz, CDCl3) δ 172.82,
138.19, 136.99, 129.47, 128.53, 128.49, 128.31, 127.45, 126.70, 81.65,
62.23, 51.65, 39.21, 27.97.
Alloc-N-benzyl-Phe-OH (32). N-Benzyl-Phe-Ot-Bu (0.25 g, 0.8
mmol, 1 equiv) in anhydrous DCM (2 mL) was treated with allyl
chloroformate (0.169 mL, 1.6 mmol, 2 equiv) and DIEA (0.278 mL,
1.6 mmol, 2 equiv) for 12 h. Alloc-N-benzyl-Phe-Ot-Bu (208 mg,
65%) was isolated as a yellowish semisolid as described above for
Alloc-N-CPM-Tyr(Alloc)-Ot-Bu: ESI-MS (m/z) [M + Na]+ 418.1994
(calcd), 418.2047; HPLC: tR 18.7 min (25−95% aqueous acetonitrile
1
with 0.1% TFA over 35 min, purity 96.5%); H NMR (500 MHz,
CDCl3, 50 °C) δ 7.32−7.21 (m, 6H), 7.21−7.05 (m, 4H), 6.05−5.89
(m, 1H), 5.28 (m, 2H), 4.82−4.52 (m, 3H), 4.16 (m, 1H), 3.99−3.82
(m, 1H), 3.32 (dd, J = 14.0 and 5.8 Hz, 1H), 3.16 (dd, J = 14.0 and 5.8
Hz, 1H), 1.39 (s, 9H); 13C NMR (126 MHz, CDCl3) δ 169.47,
156.03, 138.33, 137.51, 132.81, 129.21, 128.33, 128.13, 127.07, 126.36,
117.50, 81.49, 66.26, 62.40, 51.77, 36.24, 27.86.
N-Benzyl-Ala-Ot-Bu (120 mg) was cleaved to afford the
corresponding acid as a yellowish white solid (75 mg, 50%): ESI-
MS m/z [M + H]+ 180.1025 (calcd), 180.1009 (observed).
N-CPM-Tyr-Ot-Bu (27). Tyr-Ot-Bu (0.237 g, 1.0 mmol, 1 equiv)
was reacted with cyclopropylcarboxaldehyde and NaBH(OAc)3 in
anhydrous acetonitrile (7 mL) for 12 h and purified by flash silica gel
column chromatography (30% EtOAc/hexane) to give N-CPM-Tyr-
Ot-Bu (160 mg, 55%) as a white powder: ESI-MS m/z [M + H]+
292.1913 (calcd), 292.1819 (observed); HPLC: tR 19.1 min (purity
The ester (120 mg) was cleaved with 90% TFA/10% DCM for 12 h
at rt and isolated as described above for 31 to yield acid 32 (100 mg,
98%) as a yellowish white semisolid: ESI-MS m/z [M + Na]+
362.1368 (calcd), 362.1347 (observed); HPLC: tR 12.1 min (25−
95% aqueous acetonitrile with 0.1% TFA over 35 min, purity >99.5%).
N-Allyl-Tyr-OH (34). Tyr-Ot-Bu (0.237 g, 1.0 mmol, 1 equiv) in
DMF (2 mL) was cooled to 0−4 °C, and DIEA (0.174 mL, 1.0 mmol,
1 equiv) was added, followed by slow addition of allyl bromide (0.086
mL, 1 mmol, 1 equiv). The progress of the reaction was monitored by
TLC (1:3 EtOAc/hexane plus 2 drops of NEt3). After 45 h at rt under
N2 a negligible amount of diallyl product was visible on TLC, although
a substantial amount of residual starting material was present. The
DMF was then removed in vacuo, and the crude product was purified
by flash silica gel column chromatography (22% EtOAc/hexane) to
give N-allyl-Tyr-Ot-Bu (80 mg, 29%) as a white solid powder: ESI-MS
(m/z) [M − t-Bu]+ 222.1130 (calcd), 222.1083 (observed); HPLC: tR
15.9 min (purity >99.5%); 1H NMR (500 MHz, acetone-d6) δ 8.19 (s,
1H), 7.05 (d, J = 8.1 Hz, 2H), 6.75 (d, J = 8.3 Hz, 2H), 5.82 (m, 1H),
5.15 (dd, J = 17.2 and 1.3 Hz, 1H), 5.01 (d, J = 10.2 Hz, 1H), 3.31 (t, J
= 6.9 Hz, 1H), 3.27 (dd, J = 14.2 and 5.9 Hz, 1H), 3.12 (dd, J = 14.2
and 5.9 Hz, 1H), 2.76 (dd, J = 13.5 and 6.9 Hz, 2H), 2.81 (dd, J = 13.5
and 6.9 Hz, 2H), 13C NMR (126 MHz, acetone-d6) δ 174.52, 156.89,
138.10, 131.35, 129.53, 115.85, 115.76, 80.94, 63.75, 51.09, 39.67,
28.26.
Pure N-allyl-Tyr-Ot-Bu (80 mg) was deprotected as described
above to obtain N-allyl-Tyr-OH (43 mg, 44%) as a white powder: ESI-
MS (m/z) [M + H]+ 222.1130 (calcd), 222.1060 (observed).
Peptide Synthesis. General Procedures for Solid-Phase Peptide
Synthesis. Synthesis of (2−11) Peptide Fragments. The peptides
were assembled on low-load Fmoc-PAL-PEG-PS resin (0.19 mmol/g).
Following removal of the Fmoc group from the resin (200 mg, 0.038
mmol) using 20% piperidine in DMF (2 × 20 min), the Fmoc-
protected amino acids (4 equiv, 0.152 mmol) were coupled using
PyBOP and HOBt (4 equiv of each, 0.152 mmol) as the coupling
reagents and DIEA (10 equiv, 0.38 mmol) as the base in DCM/DMF
(1:1, 3−4 mL) for 2 h (unless otherwise noted) on a manual multiple
peptide synthesis apparatus (CHOIR)22 to afford the linear fragments.
The side chains of Lys and Arg were protected by Boc and Pbf,
respectively, those of Dap, Dab, and Orn were protected by Mtt, and
those of D-Asp and L-Asp were protected by Pip.
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97.4%); H NMR (500 MHz, acetone-d6) 8.05 (s, 1H), 6.97 (dd, J =
6.5 and 2.0 Hz, 2H), 6.65 (dd, J = 6.5 and 2.1 Hz, 2H), 3.22 (dd, J =
7.6 and 6.3 Hz, 1H), 2.79−2.67 (m, 1H), 2.66−2.59 (m, 1H), 2.38
(dd, J = 11.7 and 6.1 Hz, 1H), 2.21 (dd, J = 11.7 and 7.2 Hz, 1H), 1.26
(s, 9H), 0.82−0.72 (m, 1H), 0.35−0.27 (m, 2H), 0.05−0.01 (dd, J =
4.8 and 1.8 Hz, 2H); 13C NMR (126 MHz, CDCl3) δ 174.11, 155.11,
130.60, 128.73, 115.55, 81.53, 63.38, 53.28, 38.99, 28.23, 11.10, 3.86,
3.46.
Alloc-N-CPM-Tyr(Alloc)-OH (31). N-CPM-Tyr-Ot-Bu (0.08 g, 0.27
mmol, 1 equiv) in anhydrous DCM (2.5 mL) was treated with allyl
chloroformate (0.117 mL, 1.08 mmol, 4 equiv) and DIEA (0.189 mL,
1.08 mmol, 4 equiv) for 12 h at rt. The DCM was evaporated in vacuo,
EtOAc (10 mL) was added, and the solution was washed with water
(10 mL). Following back extraction of the aqueous layer with
additional EtOAc (10 mL), the combined EtOAc fractions were
washed with water (10 mL), dried (MgSO4), and evaporated in vacuo
to afford the product 29 (91 mg, 73%) as a yellowish white semisolid:
ESI-MS m/z [M + Na]+ 482.2155 (calcd), 482.2087 (observed);
HPLC tR 18.5 min (25−95% of aqueous acetonitrile with 0.1% TFA
1
over 35 min, purity 95.4%); H NMR (500 MHz, CDCl3, 50 °C) δ
7.22−7.14 (m, 2H), 7.07 (d, J = 8.5 Hz, 2H), 6.03−5.87 (m, 2H),
5.46−5.18 (m, 4H), 4.74−4.48 (m, 4H), 4.08 (m, 1H), 3.23 (m, 3H),
2.56 (m, 1H), 1.44 (s, 9H), 0.69 (m, 2H), 0.35 (m, 2H), 0.05 (m,
1H); 13C NMR (126 MHz, CDCl3) δ 169.97, 155.99, 153.61, 150.25,
136.79, 131.57, 130.48, 121.02, 119.34, 81.73, 69.17, 66.30, 63.35,
53.64, 29.86, 28.24, 10.34, 4.19, 3.83.
The ester was cleaved with 90% TFA/10% DCM for 12 h at room
temperature. The TFA was evaporated, and EtOAc (10 mL) and water
(10 mL) were added. The aqueous layer was extracted with EtOAc (10
mL), and the combined organic extracts were washed with water (10
mL), dried with MgSO4, and evaporated in vacuo to yield the product
(75 mg, 94%) as a yellowish white semisolid: ESI-MS m/z (M + K)+
442.1268 (calcd), 442.1250 (observed); HPLC: tR 12.05 min (25−
95% aqueous acetonitrile with 0.1% TFA over 35 min, purity 94.5%).
N-Benzyl-Phe-Ot-Bu (28). A solution of NaBH(OAc)3 (1.5 equiv)
in CHCl3 (2 mL) was added to a solution of Phe-Ot-Bu·HCl (0.618 g,
2.4 mmol, 1.2 equiv) and benzaldehyde (1 equiv) in CHCl3 (5 mL),
and the reaction mixture stirred at rt for 12 h. Water (20 mL) was
added, and the aqueous layer was extracted with additional CHCl3 (3
× 20 mL). The combined CHCl3 extracts were washed with water (20
mL) and dried over MgSO4, and the crude product was purified by
flash silica gel column chromatography (5−10% EtOAc/hexane) to
give 28 (335 mg, 44%) as a white semisolid: ESI-MS m/z [M + H]+
312.1964 (calcd), 312.1853 (observed); HPLC: tR 29.0 min (purity
99.1%); 1H NMR (500 MHz, CDCl3) δ 7.31−7.18 (m, 10H), 3.86 (d,
The (5−11) linear precursors of the cyclic peptides were
synthesized by this standard procedure. Selective deprotection of the
Pip and Mtt protecting groups on D-Asp and Dap, respectively, was
performed using 3% TFA and 5% TIS in DCM (3 × 10−15 min). The
cyclizations were performed using PyClocK and HOAt (4 equiv of
each) with DIEA (10 equiv) as the base in DCM/DMF (1:1, 4 mL for
200 mg of peptide−resin) for 24 h, with the coupling reagents
refreshed after every 8−12 h unless otherwise noted. The cyclizations
were monitored using the qualitative ninhydrin test.23 Any remaining
unreacted free amine of Dap was capped by treatment with acetyl
imidazole (16 equiv, 0.61 mmol) with DIEA (8 equiv) as the base in
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J. Med. Chem. 2015, 58, 8783−8795