Synthesis of Spiro Bicyclic Peptidomimetics
J ournal of Medicinal Chemistry, 1999, Vol. 42, No. 4 633
(2RS,4R)-2-[[2′-(R)-N-(ter t-Bu t oxyca r b on yl)-2′-(m et h -
oxyca r bon yl)p yr r olid in yl]m eth yl]th ia zin a n e-4-ca r boxy-
lic Acid (7). D-Homocysteine‚HCl (0.705 g, 4.13 mmol) was
dissolved in H2O (10 mL). NaOH (165 mg, 4.13 mEq) in H2O
(3.4 mL) was added followed by a solution of 614 (1.12 g, 4.13
mmol) in EtOH (95%, 20 mL). The reaction mixture was stirred
overnight at room temperature and then concentrated in vacuo
to a white solid which was partitioned between H2O (70 mL)
and EtOAc (100 mL). The aqueous layer was extracted with
additional portions of EtOAc (2 × 100 mL). The combined
organic layers were dried with MgSO4, and the solvent was
removed in vacuo to give 1.21 g (75%) of the diastereomeric
mixture as a white solid. This material was used without
further purification: mp 94-97 °C; FAB MS m/z 389 [MH]+.
Anal. (C17H28N2O6S) C, H, N, S.
carbamate bond in approximately a 1:1 ratio observed, CDCl3)
δ 1.41 and 1.43 (s, 9 H, Boc CH3), 1.62-2.21 (m, 10 H, Pro
γ-CH2, Pro â-CH2, 4-CH2, 3′-CH2, and 3-CH2), 2.36-2.41 (m,
1 H, 8′-CH2), 2.57-2.66 (m, 1 H, 8′-CH2), 2.96-3.13 (m, 2 H,
2′-CH2), 3.32-3.62 and 3.94-4.01 (m, 4 H, 5-CH2 and Pro
δ-CH2), 3.77 and 3.78 (s, 3 H, OCH3), 4.35 and 4.46 (dd, J )
7.4 and 3.6 Hz, 1 H, Pro R-CH), 5.06 (d, J ) 4.0 Hz, 1 H, 4′-
CH), 5.37 (dd, J ) 7.4, 6.0 Hz, 1 H, 8′a-CH); 13C NMR (75 MHz,
CDCl3) δ 24.23 and 25.00 (Pro γ-C), 24.69 (4-C), 25.74 (3′-C),
27.64 (3-C), 29.08 (Boc CH3), 29.90 and 30.83 (Pro â-C), 37.09
(8′-C), 38.84 (2′-C), 47.40 and 47.57 (Pro δ-C), 48.32 (5-C), 51.92
(OCH3), 52.97 and 53.00 (Pro R-C), 54.78 (4′-C), 58.34 (8′a-C),
67.36 (7′-C), 79.94 (Boc C-O), 154.2 and 156.2 (Boc CdO),
170.74 and 170.77 (CO2CH3), 171.5, 171.6, 173.7, and 173.9
(6′-CdO and Pro CdO); FAB MS m/z 468 [MH]+. Anal.
(C22H33N3O6S) C, H, N, S.
Meth yl [4′R-(4′r,7′r,8′a r)]-1-(ter t-Bu toxyca r bon yl)tet-
r a h yd r o-6′-oxosp ir o-[p yr r olid in e-2,7′-(6′H)-p yr r olo[2,1-b]-
th ia zin e]-4′-ca r boxyla te (8). In an oven-dried 250 mL round-
bottom flask, the thiazinane diastereomeric mixture 7 (1.19
g, 3.06 mmol) was dissolved in dry DMF (100 mL). To the flask
was added NEt3 (0.43 mL, 3.06 mol), and the solution was
heated to 70 °C and stirred for 3 days under N2. The solution
turned a deep golden color with time. The DMF was removed
in vacuo to give a dark yellow oil which was dissolved in MeOH
(10 mL) and then cooled to 0 °C in an ice bath. CH2N2 in Et2O
was added in portions until the evolution of gas ceased. Excess
CH2N2 and solvent were removed in vacuo. The resulting oil
was dissolved in EtOAc (100 mL) and extracted with 10% citric
acid (50 mL) and saturated NaCl solution and dried with
MgSO4. The solvent was removed in vacuo to give 1.1 g (97%
crude yield) of a yellow oil which was chromatographed on a
silica gel column using EtOAc/hexane (1:1) as eluent. The
product was obtained as a colorless oil in a yield of 303 mg
(27%). This oil was crystallized from Et2O to give 8 as colorless
crystals: mp 156-158 °C; [R]2D5 +126.1 (c 1.2, CHCl3); 1H
NMR (presence of rotamers about the carbamate bond in a
ratio of 3:2 observed, CDCl3) 1.36 and 1.41 (s, 9 H, Boc CH3),
1.71-2.05 (m, 4 H, 4-CH2, 8′-CH2, and 3′-CH2), 2.13-2.43 (m,
3 H, 3-CH2 and 3′-CH2), 2.61 (dt, J ) 14.6 and 3.0 Hz, 1 H,
2′-CH2), 2.82 (dd, J ) 13.4 and 8.5 Hz, 1 H, 8′-CH2), 2.93-
3.05 (m, 1 H, 2′-CH2), 3.45-3.55 (m, 2 H, 5-CH2), 3.72 and
3.76 (s, 3 H, OCH3), 5.07-5.12 (m, 1 H, 4′-CH), 5.30 and 5.41
(d, J ) 8.7, 1 H, 8′-CH); 13C NMR (CDCl3) δ 23.24 and 24.07
(4-C), 25.57 and 25.87 (3′-C), 27.63 and 28.00 (3-C), 29.01 and
29.19 (Boc CH3), 37.22 and 37.55 (8′-C), 39.57 and 40.32 (2′-
C), 48.29 and 48.42 (5-C), 51.91 and 51.99 (OCH3), 52.90 and
53.23 (4′-C), 53.87 and 54 65 (8′a-C), 66.28 and 66.45 (7′-C),
80.30 and 81.25 (Boc C-O), 153.77 and 153.80 (Boc CdO),
171.00 (6′-CdO), 174.71 and 175.04 (CO2CH3); FAB MS m/z
371 (40%) [MH]+, 271 (100%) [M-(CH3)3COCO]+. Anal.
(C17H26N2O5S) C, H, N, S.
Meth yl [4′R-(4′r,7′r,8′a r)]-1-[[1-(ter t-Bu toxyca r bon yl)-
2(S)-p yr r olid in yl]ca r bon yl]tetr a h yd r o-6′-oxosp ir o[p yr -
r olid in e -2,7′-(6′H )-p yr r olo[2,1-b]t h ia zin e ]-4′-ca r b oxy-
la te (9). Spiro bicyclic ester 8 (730 mg, 1.97 mmol) was
deprotected in 4 N HCl in dioxane (10 mL) under Ar for 1 h.
Solvent and excess HCl were removed in vacuo. Traces of HCl
were removed with the aid of CH2Cl2 to give a white solid
which was dissolved in DMF (40 mL). To that solution, Boc-
L-Pro-OH (1.02 g, 4.73 mmol, 2.4 equiv), DCC (0.98 g, 4.73
mmol, 2.4 equiv), HOBt‚H2O (0.64 g, 4.73 mmol, 2.4 equiv),
and Et3N (0.27 mL, 1.97 mmol, 1 equiv) were added. The
reaction was stirred at room temperature under Ar for 3 days.
The DMF was removed in vacuo and the residue partitioned
between H2O (50 mL) and EtOAc (200 mL). The aqueous layer
was extracted with EtOAc (2 × 50 mL). The combined organic
extracts were washed with H2O and brine and dried with
MgSO4, and the solvent was removed in vacuo. The crude
product was isolated as an oil which was crystallized from
EtOAc to give 644 mg of 9 as white needles. The mother liquor
was chromatographed on silica gel (2% MeOH in EtOAc)
affording an additional 100 mg of product (combined yield
81%): mp 216-217 °C; [R]D25 +56.1 (c 0.26, CHCl3), +25.6 (c
0.70, MeOH); 1H NMR (presence of rotamers about the
[4′R-(4′r,7′r,8′a r)]-1-[[(ter t-Bu toxyca r bon yl)-2(S)-p yr -
r olid in yl]ca r bon yl]tetr a h yd r o-6′-oxosp ir o[p yr r olid in e-
2,7′-(6′H)-pyr r olo[2,1-b]th iazin e]-4′-car boxam ide (10). Spiro
bicyclic ester 9 (550 mg, 1.48 mmol) was treated with a
concentrated solution of ammonia in MeOH (10 mL) at room
temperature. After the mixture was stirred for 3 h, the solvent
and excess ammonia were removed in vacuo to give a white
foam which was chromatographed on a silica gel column using
EtOAc/hexanes (1:1) as the eluting solvent. The product was
isolated as a white foam which was crushed to a fine white
powder (520 mg, 98%): mp 104-106 °C; [R]2D5 +107.0 (c 96,
MeOH); 1H NMR (CDCl3) δ 1.41 (s, 9 H, Boc CH3), 1.72-2.01
(m, 4 H, 4-CH2, 3′-CH2), 2.06-2.15 (m, 1 H, 3-CH2), 2.32-2.41
(m, 1 H, 3-CH2), 2.65 (dt, J ) 14.0 and 3.7 Hz, 1 H, 2′-CH2),
2.76-2.83 (m, 2 H, 8′-CH2), 2.96 (dt, J ) 14.0 and 2.4 Hz, 1
H, 2′-CH2), 3.48 (dd, J ) 7.8 and 4.8 Hz, 5-CH2), 4.93 (dd, J )
5.4 and 1.8 Hz, 1 H, 4′-CH), 4.99 (dd, J ) 9.2 and 3.2 Hz, 1 H,
8′a-CH), 5.39 (br s, 1 H, cis-CONH2), 7.74 (br s, 1 H, trans-
CONH2); 13C NMR (CDCl3) δ 24.54 (4-C), 25.65 (3′-C), 26.70
(3-C), 29.08 (Boc CH3), 38.51 and 39.70 (8′-C and 4′-CH2), 48.29
(5-C), 52.69 (4′-C), 55.38 (8′a-C), 65.84 (7′-C), 81.43 (Boc C-O),
154.88 (Boc CdO), 171.72 and 173.80 (CONH2 and 6′-CdO);
FAB MS m/z 356 (10%) [MH]+, 256 (100%) [M-(CH3)3COCO]+.
Anal. (C16H25N3O4S) C, H, N, S.
[4′R-(4′r,7′r,8′ar)]-1-[2(S)-P yr r olidin ylcar bon yl]tetr ah y-
d r o-6′-oxosp ir o [p yr r olid in e-2,7′-(5′H)-p yr r olo[2,1-b]th i-
a zin e]-4′-ca r b oxa m id e Hyd r och lor id e (3). Spiro bicyclic
amide 10 (210 mg, 0.46 mmol) was deprotected in 4 N HCl in
dioxane for 8 h under N2. The solvent and excess HCl were
removed in vacuo. The resulting residue was twice suspended
in CH2Cl2 (5 mL) and then evaporated to a white solid. This
material was lyophilized to give 3‚HCl as a hygroscopic white
solid (180 mg, 100%): mp 139-140 °C; [R]2D5 +83.0 (c 1.45,
1
MeOH); H NMR (DMSO-d6) δ 1.54-1.74 and 1.80-1.99 (m,
8 H, 4-CH2, Pro γ-CH2, 3-CH2, and 3′-CH2), 2.31-2.49 (m, 3
H, 8′-CH2, Pro â-CH2), 2.65-2.88 (m, 3 H, 8′-CH2 and 2′-CH2),
3.09-3.13 (m, 2 H, 5-CH2), 3.38-3.44 (m, 1 H, Pro δ-CH2),
3.74-3.79 (m, 1 H, Pro δ-CH2), 4.42 (t, J ) 7.6 Hz, 1 H, Pro
R-CH), 4.62 (d, J ) 4.9 Hz, 1 H, 4′-CH), 5.13 (d, J ) 8.6 Hz, 1
H, 8′a-CH), 6.98 (br s, 1 H, cis-CONH2), 7.53 (br s, 1 H, trans-
CONH2), 8.62 (br s, 1 H, +NH2), 10.12 (br s, 1 H, +NH2); 13C
NMR (DMSO-d6) δ 23.41 and 23.77 (4-C and Pro γ-C), 25.03
and 25.47 (3′-C and 3-C), 27.77 (Pro â-C), 36.02 and 37.25 (8′-C
and 2′-CH2), 45.44 and 47.54 (Pro δ-C and 5-C), 51.14 (Pro
R-C), 54.09 (4′-C), 58.09 (8′a-C), 66.62 (7′-C), 166.62, 170.39,
and 171.53 (CONH2, 6′-CdO, and Pro CdO); FAB HRMS m/z
353.1645 (C16H24N4O3S + H+ requires 353.1649). Anal.
(C16H24N4O3S‚HCl‚3H2O) C, H, N, S.
Meth yl (R)-ter t-Bu toxyca r bon yl-2-(3′-for m yleth yl)p r o-
lin a te (11). To an oven-dried 500 mL round-bottom flask
charged with 40 mL of distilled CH2Cl2 was transferred under
N2 a 2.0 M solution of borane-methyl sulfide complex in THF
(1.55 mL, 3.1 mmol). Compound 5 (2.48 g, 9.22 mmol) was
dissolved in 5 mL of dry CH2Cl2, and this solution was
transferred dropwise to the reaction flask at room tempera-
ture. The solution was stirred under Ar for 1 h, after which
time the mixture was concentrated in vacuo. The resulting
trialkylborane was suspended in CH2Cl2 (10 mL) and then