MA). Compounds were dissolved in DMSO so that the final
concentration of DMSO was < 2%, and the reaction was initiated
with ROCK1 or ROCK2 produced at BMS. After incubation, the
reaction was terminated by the addition of EDTA and the
phosphorylated and non-phosphorylated peptides separated using a
LabChip 3000 Reader (Caliper Life Sciences). Controls consisted
of assays that did not contain compound, and backgrounds
consisted of assays that contained enzyme and substrate but had
EDTA from the beginning of the reaction to inhibit kinase activity.
Compounds were tested in dose-response format, and the inhibition
of kinase activity was calculated at each concentration of
compound. The inhibition data were fit to a four-parameter logistic
equation y = A+((B-A)/(1+((C/x)^D))), where A and B denote
minimal and maximal % inhibition, respectively, C is the IC50, D is
hill slope and x represents compound concentration equation, to
determine the IC50; i.e., the concentration of compound required to
inhibit 50% of kinase activity. Potencies of ROCK inhibitors were
also determined in homogeneous time-resolved fluorescence
(HTRF assay), a time resolved FRET-based competition binding
assay. A His-tagged form of ROCK1 or ROCK2 produced at BMS
at a concentration of 1 nM was incubated with 0.2 nM Tb-labeled
anti-His detection antibody (Cis-Bio, MA), test compound, and
fluorescein-labeled ATP competitive probe at a concentration
corresponding to the probe’s equilibrium dissociation constant for
one hour. Fluorescence at 495 nm and 520 nm was measured using
an EnVision microplate reader to quantify FRET between Tb-
labeled detection antibody and fluorescein-labeled probe.
Background subtracted FRET ratios were normalized to the
maximum signal obtained in the absence of test compound. These
values were converted to a percent inhibition. Percent inhibition
was determined for test compounds at 11 concentrations. The IC50,
defined as the concentration of competing test compound needed to
reduce specific binding of the probe by 50%, was derived by fitting
Rossi for the X-ray crystal structure pictures. The co-crystal, X-
ray diffraction data and partially refined crystal structure were
obtained from Proteros. BMS Lead Discovery and Optimization
generated kinome selectivity data. We appreciate Drs. Heather
Finlay, Peter Glunz, Ellen Kick, and Joseph Luettgen for
reviewing this manuscript.
References and notes
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data to the 4-parameter logistic equation
y = A+((B-
A)/(1+((C/x)^D))), where A and B denotes minimal and maximal
% inhibition, respectively, C is the IC50, D is hill slope and x
represents compound concentration. ROCK1 and ROCK2
potencies were determined by both methods. The potencies of the
other kinases in the kinase panel for selectivity were determined
using either of the two methods.
16. The PDB ID is 7JNT.
13. Park, J.; Chun, K.-H. Gene, 2020, 737, 144474.
14. KD025
- Clinical Trials, ClinicalTrials.gov, NCT03919799,
December 20, 2019.
15. Caliper Assay: In vitro potencies of ROCK inhibitors were
determined in an assay containing 20 mM HEPES, pH 7.5, 20 mM
MgCl2, 0.015% Brij-35, 4 mM DTT, 5 M ATP and 1.5 M peptide
substrate (FITC-AHA-AKRRRLSSLRA-OH, Tufts University,
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