A Molecular Oyster
A R T I C L E S
for titrations with 2) in 0.002% TMS/CD3OD were prepared. In total,
11 NMR tubes were set up for titrations with 2 or 4 and 21 for titrations
with 1 by adding increasing amounts of the guest solution (0-500 µL)
to 500 µL aliquots of the host solution. All samples were made up to
a volume of 1 mL with D2O, and the respective 1H NMR spectra were
recorded. The chemical shifts of the H(R), APAH(3), or APAH(5)
protons of the peptide were referenced against the internal standard
used, and plotted against the ratio of guest/host concentration. From
the resulting saturation curves, Ka and ∆δmax were calculated by the
suitable nonlinear least-squares fitting method described for 1:119,21 or
1:233 complexes using the SIGMA Plot 3.0 (Jandel Scientific) software
package.
DMSO) δ 1. 24 + 1.34 (2 s, 9H; tBuCH3), 2.14 (m, 1H; HypC(â)H),
2.37 (m, 1H; HypC(â)H), 2.44 (s, 3H; TsCH3), 3.46 (dt, 2J ) 12.3 Hz,
1H; HypC(δ)H), 3.54 (dd, 2J ) 12.4 Hz, 3J ) 3.5 Hz, 1H; HypC(δ)H),
4.55 (m, 1H; HypC(R)H), 5.11 (m, 1H; HypC(γ)H), 5.39 (s, 2H;
PhCH2), 7.35-7.53 (m, b, 7H; PhH + TsH(3)), 7.83 (m, 3H; APAH(3)
+ TsH(4)), 7.99-8.02 (2 t, 3J ) 8.2 Hz, 1H; APAH(4)), 8.29 + 8.34
(2 d, 3J ) 8.2 Hz, 1H; APAH(5)), 11.04 + 11.11 (2 s, 1H; APANH).
Anal. Calcd for C30H33N3O8S (Mr ) 595.7): C, 60.49; H, 5.58; N,
7.05. Found: C, 60.42; H, 5.60; N, 6.94.
Tosylated Cyclopeptide. For the synthesis of the linear hexapeptide
precursor of a cyclopeptide moiety of 2, the BOC deprotected dipeptide
H-(4R)-4TsHyp-APA-OBn and a tetrapeptide with proline subunits
BOC-[Pro-6APA]2-OH was coupled as described previously by us for
similar compounds (see for example, supplementary information of ref
6). For the cyclization, this hexapeptide (1.03 g, 1 mmol) was
deprotected at both ends of the peptide chain and dissolved in a mixture
of degassed DMF (40 mL) and DIEA (1.04 mL, 6 mmol). The resulting
solution was added dropwise over the course of 4 h to a solution of
TBTU (1.60 g, 5 mmol) and DIEA (0.42 mL, 2.4 mmol) in degassed
DMF (200 mL) at 80 °C. If necessary, the pH of the reaction mixture
was adjusted afterward to ca. 9 by adding more DIEA, and stirring
was continued for 1 h at 80 °C. The solvent was then evaporated in
vacuo, and the product was isolated from the residue by chromato-
graphic workup. An initial purification step was carried out using a
silica gel column (acetone). The material recovered was further purified
on an RP-8 column. For this, it was dissolved in a small amount of
DMF and applied to a column conditioned with 1,4-dioxane/H2O, 1:10.
The eluent composition was gradually changed until the pure product
eluted (1,4-dioxane/H2O, 1:1). The material thus obtained was dissolved
in acetone (20 mL), and the resulting solution was poured slowly in
diethyl ether (200 mL) under stirring. Stirring was continued for 15
min, and the precipitate was filtered off and dried in vacuo: yield 0.33
g (40%); mp 205 °C (dec); [R]25D ) -516.5 (c ) 2, DMF); 1H NMR
(300 MHz, [d6]DMSO, 25 °C, TMS) δ 1.84 (m, 4H; ProC(γ)H2), 2.06
(m, 2H; ProC(â)H), 2.23 (m, 1H; HypC(â)H), 2.45 (s, 3H; TsCH3),
2.62 (m, 2H; ProC(â)CH), 2.96 (m, 1H; HypC(â)H), 3.55-3.75 (m,
b, 6H; ProC(δ)H2 + HypC(δ)H2), 5.14 (m, 1H; HypC(γ)H), 5.54 (m,
2H; ProC(R)H), 5.66 (dd, 3J(Hax,Hax) ) 7.0 Hz, 3J(Hax,Heq) ) 6.2 Hz,
Microcalorimetry. In a typical experiment, solutions of the guest
(15 mM) in 50% H2O/CH3OH were injected stepwise (8 µL per step)
at a rate of 1 µL/s to a solution of 1 or 2 in the same solvent mixture
(0.75 mL, 0.5 mM). The next titration step was always started after
reaching chemical and thermal equilibrium. The measured heat flow
was recorded as function of time and converted into enthalpies by
integration of the appropriate reaction peaks. Dilution effects were
corrected by subtracting the results of a blank experiment with a solution
of 50% H2O/CH3OH in place of the receptor solution under identical
experimental conditions. The association parameters were evaluated
by means of a computer program generated using the MATLAB
programming package (Mathworks Inc., Natick, MA).
Dipeptide BOC-(4R)-Hyp-APA-OBn. 6-Amino-2-picolinic acid
benzyl ester (1.71 g, 7.50 mmol) (supplementary information of ref
6), BOC-(4R)-L-hydroxyproline (2.61 g, 11.3 mmol), and PyCloP (4.76
g, 11.3 mmol) were dissolved in CH2Cl2 (150 mL). At room temper-
ature, DIEA (3.9 mL, 22.6 mmol) was added dropwise, and then the
reaction mixture was stirred for 5 d. The solvent was subsequently
evaporated in vacuo, and the residue was subjected to a silica gel
column (hexane/ethyl acetate, 3:1; ethyl acetate). All fractions contain-
ing the product were collected and evaporated to dryness in vacuo.
The remaining residue was dissolved in CH2Cl2 (100 mL), and this
solution was poured into diethyl ether (800 mL) under stirring. After
10 min, the precipitate was filtered off, and the filtrate was again
evaporated to dryness. From the residue, pure product was isolated by
another chromatographic purification step on a silica gel column
3
3
(hexane/ethyl acetate, 1:15): yield 2.41 g (73%); mp 78-82 °C; [R]25
) -39.0 (c ) 2, MeOH); H NMR (300 MHz, [d6]DMSO, 100 °C,
1H; HypC(R)H), 7.14 (d, J ) 8.2 Hz, 1H; APAH(3)), 7.22 (d, J )
D
8.2 Hz, 1H; APAH(3)), 7.27 (d, 3J ) 8.2 Hz, 1H; APAH(3)), 7.45 (m,
b, 3H; APAH(5)), 7.54 (d, J ) 7.9 Hz, 2H; TsH(3)), 7.69-7.78 (m,
b, 3H; APAH(4)), 7.88 (d, J ) 8.2 Hz, 2H; TsH(2)), 9.70 + 9.72 +
1
3
TMS) δ 1.32 (s, 9H; tBuCH3), 1.97 (m, 1H; HypC(â)H), 2.15 (m, 1H;
3
2
2
HypC(â)H), 3.30 (d, J ) 11.0 Hz, 1H; HypC(δ)H), 3.49 (dd, J )
11.0 Hz, 3J ) 4.8 Hz, 1H; HypC(δ)H), 4.30 (m, 1H; HypC(γ)H), 4.55
(t, 3J ) 7.6 Hz, 1H; HypC(R)H), 4.71 (d, 3J ) 3.8 Hz, 1H; OH), 5.38
(s, 2H; PhCH2), 7.39 (m, b, 5H; PhH), 7.76 (dd, 3J ) 7.5 Hz, 4J ) 1.0
9.83 (3 s, 3 × 1H; APANH); 13C NMR (75 MHz, [d6]DMSO, 25 °C,
TMS) δ 22.3 + 22.4 (ProC(γ)), 30.6 (TsCH3), 32.3 + 32.5 (ProC(â)),
38.2 (HypC(â)), 47.9 + 48.1 (ProC(δ)), 54.0 (HypC(δ)), 59.9
(HypC(R)), 61.4 + 61.5 (ProC(R)), 79.0 (HypC(γ)), 115.4 + 115.6 +
116.2 (APAC(3)), 119.5 + 119.6 + 119.7 (APAC(5)), 127.5 (TsC(2)),
130.3 (TsC(3)), 132.6 (TsC(4)), 138.8 + 138.9 (APAC(4)), 145.3
(TsC(1)), 148.3 + 148.5 + 148.6 (APAC(2)), 151.3 + 151.7 + 152.0
(APAC(6)), 165.7 + 166.1 + 166.3 (APACO), 169.6 + 170.8 + 171.1
(HypCO/ProCO). Anal. Calcd for C40H39N9O9S‚2H2O (Mr ) 857.9):
C, 56.00; H, 5.05; N, 14.69. Found: C, 55.87; H, 5.07; N, 14.42. FAB-
MS [m/z (relative intensity)]: 822 (30) [M + H+].
3
3
Hz, 1H; APAH(3)), 7.94 (t, J ) 7.7 Hz, 1H; APAH(4)), 8.26 (dd, J
) 7.7 Hz, 4J ) 1.0 Hz, 1H; APAH(5)), 10.47 (s, 1H; APANH). Anal.
Calcd for C23H27N3O6‚2H2O (Mr ) 477.5): C, 57.85; H, 6.54; N, 8.80.
Found: C, 58.16; H, 6.21; N, 8.64.
Tosylated Dipeptide BOC-(4R)-4TsHyp-APA-OBn. BOC-(4R)-
Hyp-APA-OBn (2.21 g, 5.00 mmol) was dissolved in a mixture of
methylene chloride/pyridine, 1:1 (10 mL). Toluenesulfonyl chloride
(4.77 g, 25 mmol) was added in one portion, and the reaction mixture
was stirred at room temperature overnight. Afterward, the solvent was
evaporated in vacuo, and the residue was dissolved in ethyl acetate.
The resulting solution was washed three times with 10% aqueous
Na2CO3 and three times with water, and the solvent was again removed.
The product was isolated from the residue chromatographically (hexane/
Cyclopeptide Azide. The tosylated cyclopeptide (0.45 g, 0.55 mmol)
was dissolved in DMF (10 mL). After the addition of sodium azide
(0.18 g, 2.75 mmol), the reaction mixture was heated to 80 °C for 6 h.
The solvent was then removed in vacuo, and the product was isolated
from the residue by chromatographic workup using a silica gel column
(CH2Cl2/MeOH, 5:1). Trituration with diethyl ether of the material
recovered afforded an off white solid: yield 0.33 g (87%); mp 184 °C
(dec); [R]25D ) -530.0 (c ) 2, DMF); 1H NMR (500 MHz, [d6]DMSO,
25 °C, TMS) δ 1.84 (m, 4H; ProC(γ)H2), 2.05 (m, 2H; ProC(â)H),
2.41 (td, 2J ) 13.6 Hz, 1H; HypC(â)H), 2.57 (m, 2H; ProC(â)H), 2.86
(m, 1H; HypC(â)H), 3.59 (m, 2H; ProC(δ)H), 3.71 (m, 3H; ProC(δ)H
+ HypC(δ)H), 3.83 (dd, 3J ) 6.0 Hz, 2J ) 12.9 Hz, 1H; HypC(δ)H),
ethyl acetate, 1:1). The product solidified upon drying in vacuo: yield
1
2.74 g (92%); mp 67-73 °C; [R]25 ) -26.6 (c ) 2, MeOH); H
D
NMR (300 MHz, [d6]DMSO, 25 °C, TMS) (some signals split in the
spectrum due to a slow rotation around the tertiary amide bond; at
elevated temperatures, decomposition of the product occurred in
(33) Bonar-Law, R. P.; Sanders, J. K. M. J. Am. Chem. Soc. 1995, 117, 259-
3
271.
4.48 (m, 1H; HypC(γ)H), 5.60 (t, J ) 7.0 Hz, 1H; ProC(R)H), 5.64
9
J. AM. CHEM. SOC. VOL. 124, NO. 43, 2002 12759