Journal of Medicinal Chemistry
Article
(600 MHz, DMSO-d6):δ 0.80 (t, 3H, J = 7.5 Hz), 0.82−0.86 (m, 6H), 0.90
(d, 3H, J = 6.6 Hz), 1.00−1.10 (m, 1H), 1.36−1.46 (m, 1H), 1.46−1.66
(m, 8H), 1.66−1.76 (m, 4H), 1.77−1.86 (m, 3H), 1.94−2.04 (m, 1H),
2.68 (dd, 1H, J = 14.0, 8.2 Hz), 2.81−2.93 (m, 1H), 2.94−3.00 (m, 2H),
3.03−3.15 (m, 2H), 3.20−3.31 (m, 4H), 3.47 (t, 2H, J = 5.6 Hz), 3.53−
3.62 (m, 8H), 3.80−3.86 (m, 1H), 4.18−4.25 (m, 2H), 4.32−4.37 (m,
1H), 4.39−4.44 (m, 1H), 4.46−4.53 (m, 1H), 6.58−6.63 (m, 2H), 6.96−
7.01 (m, 2H), ca. 7.0 (br s, 2H), ca. 7.4 (br s, 2H), 7.46 (br s, 1H), 7.72−
7.78 (m, 2H), 7.78−7.96 (m, 4H), 8.13−8.27 (m, 4H), 8.51 (br s, 2H),
8.68 (d, 1H, J = 7.4 Hz), 9.11 (br s, 1H), 9.21 (br s, 1H), 10.7 (br s, 1H),
12.5 (br s, 1H). 13C NMR (150 MHz, DMSO-d6): δ 10.9, 15.1, 21.2, 22.8,
23.5, 24.1, 24.2, 24.3, 24.6, 28.2, 28.3, 29.1, 36.4, 37.1, 38.5, 39.1, 39.8, 40.2,
40.5, 46.8, 50.1, 50.4, 51.6, 54.1, 56.4, 59.2, 66.7, 68.7, 69.4, 69.6, 114.8,
116.9 (q, J = 298 Hz) (TFA), 127.6, 130.1, 153.7, 153.9, 155.8, 156.9, 158.7
(q, J = 32 Hz) (TFA), 168.3, 169.2, 170.7, 170.9, 171.2, 173.8. HRMS
(ESI): m/z [M + 2H]2+ calcd for [C45H80N14O11]2+ 496.3060, found
496.3065. RP-HPLC (220 nm): 98% (tR = 5.9 min, k = 6.8).
C45H78N14O11·C8H4F12O8 (991.19 + 456.09).
(6.7 mg, 4.8 μmol) and 38 (1 mg, 1.63 μmol) following the procedure
for the preparation of 23. DIPEA: 7 mg, 54 μmol. K2CO3: 4 mg,
40 μmol. The product was purified by preparative HPLC (conditions as
for 23; tR = 25 min). Lyophilization of the eluate afforded 29 as a
dark-red solid (0.38 mg, 13%). HRMS (ESI): m/z [M + 3H]3+ calcd for
[C69H105N16O15S]3+ 476.5883, found 476.5891. RP-HPLC (220 and
500 nm): 99% (tR = 10.3 min, k = 12.6). C69H102N16O15S·C6H3F9O6
(1427.71 + 342.07).
H-[Nω-(N-{4-[N-(6-{3,3-dimethyl-2-[5-(1,3,3-trimethyl-3H-indol-1-
ium-2-yl)penta-2,4-dien-1-ylidene]indolin-1-yl}hexanoyl)amino]-
butyl}aminocarbonyl)]Arg-Arg-Pro-Tyr-Ile-Leu-OH Trifluoroacetate
Tris(hydrotrifluoroacetate) (30). Compound 30 was prepared from
25 (8.4 mg, 6.06 μmol) and 39 (1.7 mg, 2.57 μmol) following the
procedure for the preparation of 23. DIPEA: 7 mg, 54 μmol. K2CO3:
4 mg, 40 μmol. The product was purified by preparative HPLC (column,
Kinetex 250 mm × 21 mm; gradient, 0−23 min; MeCN/0.1% aq TFA
10:90−38:62; 23−40 min, 38:62−46:54; tR = 33 min). Lyophilization of
the eluate afforded 30 as a dark-blue solid (1.4 mg, 28%). HRMS (ESI):
m/z [M+2H]3+ calcd for [C75H113N16O10]3+ 465.9603, found 465.9611.
RP-HPLC (220 and 630 nm): 98% (tR = 13.9 min, k = 17.3).
C75H111N16O10·C8H3F12O8 (1396.78 + 455.09).
H-{Nω-[N-(4-propanoylaminobutyl)aminocarbonyl]}Arg-Arg-Pro-
Tyr-Ile-Leu-OH Tris(hydrotrifluoroacetate) (27). Compound 27 was
prepared from 25 (14.2 mg, 10.22 μmol) and 37 (1.06 mg, 6.2 μmol)
following the procedure for the preparation of 21. DIPEA: 10.6 mg,
82 μmol. K2CO3: 10 mg, 99 μmol. The product was purified by
preparative HPLC (column, Gemini-NX C18 250 mm × 21 mm;
gradient, 0−35 min; MeCN/0.1% aq TFA 10:90−37:63; tR = 23 min).
Lyophilization of the eluate afforded 27 as a white fluffy solid (7.1 mg,
86%). 1H NMR (600 MHz, DMSO-d6): δ 0.80 (t, 3H, J = 7.4 Hz), 0.82−
0.86 (m, 6H), 0.90 (d, 3H, J = 6.6 Hz), 0.98 (t, 3H, J = 7.6 Hz), 1.01−
1.09 (m, 1H), 1.34−1.46 (m, 5H), 1.46−1.65 (m, 8H), 1.65−1.75 (m,
4H), 1.78−1.87 (m, 3H), 1.96−2.02 (m, 1H), 2.05 (q, 2H, J = 7.6 Hz),
2.67 (dd, 1H, J = 14.1, 8.2 Hz), 2.83−2.90 (m, 1H), 3.00−3.05 (m, 2H),
3.05−3.14 (m, 4H), 3.25 (br s, 2H), 3.53−3.63 (m, 2H), 3.78−3.84 (m,
1H), 4.18−4.25 (m, 2H), 4.32−4.38 (m, 1H), 4.39−4.45 (m, 1H),
4.47−4.54 (m, 1H), 6.58−6.63 (m, 2H), ca. 6.9 (br s, 2H), 6.96−7.02
(m, 2H), ca. 7.3 (br s, 2H), 7.50 (t, 1H, J = 5.1 Hz), 7.58 (t, 1H, J =
5.4 Hz), 7.71−7.78 (m, 2H), 7.90 (d, 1H, J = 7.9 Hz), 8.07−8.18 (m,
3H), 8.20 (d, 1H, J = 7.8 Hz), 8.42 (br s, 2H), 8.67 (d, 1H, J = 7.5 Hz),
9.06 (br s, 1H), 9.17 (br s, 1H), 10.1 (br s, 1H), 12.5 (br s, 1H). HRMS
(ESI): m/z [M + 2H]2+ calcd for [C46H80N14O10]2+ 494.3085, found
494.3092. RP-HPLC (220 nm): 99% (tR = 8.2 min, k = 9.8).
C46H78N14O10·C6H3F9O6 (987.20 + 342.07).
H-Arg-{Nω-[N-(8-amino-3,6-dioxaoctyl)aminocarbonyl]}Arg-Pro-
Tyr-Ile-Leu-OH Tetrakis(hydrotrifluoroacetate) (31). The peptide was
synthesized according to the general procedure using a H-Leu-2-ClTrt
resin (loading: 0.81 mmol/g). Purification by preparative HPLC
was performed with a Gemini-NX C18 250 mm × 21 mm (gradient,
0−35 min; MeCN/0.1% aq TFA 8:92−41:59; tR = 19 min). Lyophilization
of the eluate afforded 31 as a white fluffy solid (48.2 mg, 37%). 1H NMR
(600MHz, DMSO-d6): δ 0.79 (t, 3H, J = 7.4 Hz), 0.82−0.86 (m, 6H), 0.90
(d, 3H, J = 6.6 Hz), 0.99−1.09 (m, 1H), 1.36−1.45 (m, 1H), 1.45−1.48
(m, 5H), 1.48−1.77 (m, 7H), 1.77−1.87 (m, 3H), 1.94−2.04 (m, 1H),
2.68 (dd, 1H, J = 14.0, 8.2 Hz), 2.81−2.92 (m, 1H), 2.94−3.00 (m, 2H),
3.06−3.14 (m, 2H), 3.17−3.31 (m, 4H), 3.46 (t, 2H, J = 5.6 Hz), 3.53−
3.62 (m, 8H), 3.78−3.85 (m, 1H), 4.18−4.25 (m, 2H), 4.31−4.37 (m,
1H), 4.39−4.45 (m, 1H), 4.48−4.55 (m, 1H), 6.58−6.63 (m, 2H), 6.96−
7.01 (m, 2H), ca. 7.1 (br s, 2H), ca. 7.4 (br s, 2H), 7.46 (br s, 1H), 7.75 (d,
1H, J = 8.9 Hz), 7.80 (t, 1H, J = 5.8 Hz), 7.81−7.98 (m, 4H), 8.12−8.26
(m, 4H), 8.52 (br s, 2H), 8.69 (d, 1H, J = 7.4 Hz), 9.08 (br s, 1H), 9.21 (br
s, 1H), 10.7 (br s, 1H), 12.5 (br s, 1H). 13C NMR (150 MHz, DMSO-d6):
δ 10.9, 15.1, 21.2, 22.8, 24.1 (3 carb), 24.2, 24.3, 28.2, 28.4, 29.1, 36.4, 37.1,
38.6, 39.1, 39.8, 40.1, 40.6, 46.8, 50.1, 50.4, 51.7, 54.1, 56.3, 59.2, 66.7, 68.7,
69.4, 69.6, 114.8, 116.8 (q, J = 297 Hz) (TFA), 127.6, 130.1, 153.7, 153.9,
155.8, 156.8, 158.7 (q, J = 32 Hz) (TFA), 168.3, 169.2, 170.7, 170.9, 171.2,
173.8. HRMS (ESI): m/z [M + 2H]2+ calcd for [C45H80N14O11]2+
496.3060, found 496.3063. RP-HPLC (220 nm): 99% (tR = 6.3 min,
k = 7.3). C45H78N14O11·C8H4F12O8 (991.19 + 456.09).
H-{Nω-[N-(8-propanoylamino-3,6-dioxaoctyl)aminocarbonyl]}-
Arg-Arg-Pro-Tyr-Ile-Leu-OH Tris(hydrotrifluoroacetate) (28). Com-
pound 28 was prepared from 26 (12.9 mg, 8.91 μmol) and 37 (1.1 mg,
6.43 μmol) using the procedure for the preparation of 21, but DMF/
water (4:6 v/v) (200 μL) was used as solvent. DIPEA: 9.0 mg, 70 μmol.
K2CO3: 8.6 mg, 85 μmol. The product was purified by preparative
HPLC (column, Gemini-NX C18 250 mm × 21 mm; gradient,
0−35 min; MeCN/0.1% aqTFA 8:92−43:57; tR = 21 min). Lyophilization
of the eluate afforded 28 as a white fluffy solid (7.7 mg, 86%). 1H NMR
(600 MHz, DMSO-d6):δ 0.80 (t, 3H, J = 7.4 Hz), 0.82−0.86 (m, 6H), 0.90
(d, 3H, J = 6.6 Hz), 0.97 (t, 3H, J = 7.6 Hz), 1.00−1.09 (m, 1H), 1.37−1.46
(m, 1H), 1.46−1.65 (m, 8H), 1.65−1.76 (m, 4H), 1.78−1.88 (m, 3H),
1.96−2.04 (m, 1H), 2.06 (q, 2H, J = 7.6 Hz), 2.67 (dd, 1H, J = 14.1,
8.2 Hz), 2.83−2.90 (m, 1H), 3.04−3.15 (m, 2H), 3.16−3.21 (m, 2H),
3.21−3.31 (m, 4H), 3.39 (t, 2H, J = 6.1 Hz), 3.46 (t, 2H, J = 5.4 Hz), 3.49−
3.54 (m, 4H), 3.54−3.63 (m, 2H), 3.78−3.84 (m, 1H), 4.19−4.25 (m,
2H), 4.32−4.37 (m, 1H), 4.39−4.44 (m, 1H), 4.47−4.54 (m, 1H), 6.58−
6.63 (m, 2H), ca. 6.9 (br s, 2H), 6.97−7.03 (m, 2H), ca. 7.3 (br s, 2H), 7.49
(t, 1H, J = 5.4 Hz), 7.57 (t, 1H, J = 5.4 Hz), 7.75 (d, 1H, J = 8.9 Hz), 7.79
(t, 1H, J = 5.4 Hz), 7.90 (d, 1H, J = 7.9 Hz), 8.08−8.18 (m, 3H), 8.20 (d,
1H, J = 7.7 Hz), 8.44 (br s, 2H), 8.67 (d, 1H, J = 7.4 Hz), 9.07 (br s, 1H),
9.17 (br s, 1H), 10.1 (br s, 1H), 12.5 (br s, 1H). HRMS (ESI): m/z [M +
2H]2+ calcd for [C48H84N14O12]2+ 524.3191, found 524.3196. RP-HPLC
(220 nm): 99% (tR = 8.2 min, k = 9.8). C48H82N14O12·C6H3F9O6
(1047.3 + 342.07).
H-Arg-{Nω -[N-(8-propanoylamino-3,6-dioxaoctyl)-
aminocarbonyl]}Arg-Pro-Tyr-Ile-Leu-OH Tris(hydrotrifluoroacetate)
(32). Compound 32 was prepared from 31 (12.5 mg, 8.64 μmol) and 37
(1.05 mg, 6.13 μmol) using the procedure for the preparation of 21, but
DMF/water (4:6 v/v) (200 μL) was used as solvent. DIPEA: 9.0 mg,
70 μmol. K2CO3: 8.6 mg, 85 μmol. The product was purified by
preparative HPLC (column, Gemini-NX C18 250 mm × 21 mm;
gradient, 0−35 min; MeCN/0.1% aq TFA 8:92−43:57; tR = 21 min).
Lyophilization of the eluate afforded 32 as a white fluffy solid (7.6 mg,
89%). 1H NMR (600 MHz, DMSO-d6): δ 0.80 (t, 3H, J = 7.4 Hz), 0.82−
0.86 (m, 6H), 0.90 (d, 3H, J = 6.6 Hz), 0.97 (t, 3H, J = 7.6 Hz), 1.01−
1.09 (m, 1H), 1.36−1.44 (m, 1H), 1.44−1.58 (m, 5H), 1.58−1.77 (m,
7H), 1.78−1.88 (m, 3H), 1.96−2.04 (m, 1H), 2.06 (q, 2H, J = 7.6 Hz),
2.67 (dd, 1H, J = 14.0, 8.1 Hz), 2.83−2.90 (m, 1H), 3.06−3.13 (m, 2H),
3.16−3.20 (m, 2H), 3.21−3.30 (m, 4H), 3.39 (t, 2H, J = 6.1 Hz), 3.46 (t,
2H, J = 5.3 Hz), 3.49−3.54 (m, 4H), 3.54−3.62 (m, 2H), 3.77−3.83 (m,
1H), 4.19−4.25 (m, 2H), 4.32−4.37 (m, 1H), 4.40−4.46 (m, 1H),
4.49−4.54 (m, 1H), 6.58−6.63 (m, 2H), 6.96−7.02 (m, 2H), ca. 7.0 (br
s, 2H), ca. 7.3 (br s, 2H), 7.51 (br s, 1H), 7.58 (t, 1H, J = 5.9 Hz), 7.75 (d,
1H, J = 9.0 Hz), 7.79 (t, 1H, J = 5.1 Hz), 7.89 (d, 1H, J = 7.5 Hz), 8.07−
8.16 (m, 3H), 8.19 (d, 1H, J = 7.7 Hz), 8.44 (br s, 2H), 8.67 (d, 1H, J =
7.5 Hz), 9.02 (br s, 1H), 9.17 (br s, 1H), 9.96 (br s, 1H), 12.5 (br s, 1H).
HRMS (ESI): m/z [M + 2H]2+ calcd for [C48H84N14O12]2+ 524.3191,
H-{Nω-[N-(4-{N-[6-(6-{2-[7-(diethylamino)-2-oxo-2H-chromen-3-
yl]vinyl}-3-sulfonato-pyridin-1-ium-1-yl)hexanoyl]amino}butyl)-
a m i n oc a r bo n y l] } A rg - A r g - P r o - T y r - Il e - L e u - O H Tr i s -
(hydrotrifluoroacetate) (29). The compound was prepared from 25
M
J. Med. Chem. XXXX, XXX, XXX−XXX