Journal of the American Chemical Society
Article
seems operative, given many analogous literature reactions that
proceed under standard radical chlorination conditions.17b,c
Another possibility involves concerted homolysis of the C−S
and S−Cl bonds in 31, followed by recombination of the
resulting carbon and chlorine radicals to 32.17a,d However, this
mechanism seems less likely given the high bond dissociation
energy (BDE) of C−S and S−Cl bonds (∼67 kcal/mol).17d
Further studies are underway to elucidate the mechanism of
this transformation.
Scheme 3. Peptide Coupling of 4 and 5 Followed by
Deprotection Sequence to Complete the Synthesis of
GE81112 B1
Further difficulty in the synthesis of 27 was experienced
when the trityl-protected derivative of 32 proved to be more
labile than 9, posing significant challenge in selective Boc
deprotection after coupling with 8. As a workaround, linear
assembly to a tripeptide intermediate consisting of 6, 7, and 8
was first prepared and submitted to a final peptide coupling
with SI32, which provided analogue 27 after deprotection. Our
synthesis of 27 delineates an alternative assembly strategy to
the GE81112 core that is additionally more well-suited to
diversity-oriented synthesis in the production of large numbers
of analogues. Finally, the use of a Franck aldol on aldehyde 16
and selective azide reduction provided protected β-hydroxy-L-
histidine 33, albeit in diminished yield and diastereoselectivity.
Nevertheless, 33 could be submitted to the same synthetic
sequence described in Schemes 2 and 3 to afford analogue 28.
Analogues 24−28 were next subjected to antibacterial
assays, consisting of minimal inhibitory concentration (MIC)
measurements against E. coli strain MG1655 in minimal media
with 3 and gentamycin as a control. The MIC obtained for 3
was in close agreement with previous data in the literature.1,3,4
Analogue 24 was found to be completely inactive. In
conjunction with previous finding from Sanofi, this result
suggests that the syn-β-hydroxy amino acid unit in AA1 is
highly crucial for inhibitory activity.4 Analogue 25, containing
unmodified L-Cit at AA2, was found to maintain the
antibacterial activity of the parent natural product. This
finding points to the extraneous nature of the γ-OH unit in
AA2 for activity and also the possibility of further developing
simplified analogue(s) of 3 with equipotent antibacterial
activity. Removal of the C2-NH2 moiety in AA3 or C2−Cl
in AA4 only reduced the activity of the resulting compounds
by 5−15-fold, while removal of the β-OH in AA4 led to a more
than 500-fold reduction in activity. These data show that the β-
OH motif is the most crucial peripheral modification within
the AA3−AA4 dipeptide for antibacterial activity.
In light of the above data, we next sought to further
investigate the structural requirements for antibacterial activity
at the AA1 and AA2 positions (Scheme 4B). The importance
of the syn-β-hydroxy amino acid unit in AA1 begged the
question whether this property is highly specific to 3-hydroxy-
L-pipecolic acid or whether substitution with other hydroxy-
lated amino acids, either cyclic or acyclic, is tolerated at this
position. To this end, we synthesized three analogues
containing cis-3-hydroxy-L-proline, cis-4-hydroxy-L-proline,
and cis-3-hydroxy-L-norleucine at AA1 (34, 35, and 36,
respectively). The corresponding AA1 building blocks for
these analogues were all prepared through the use of enzymatic
hydroxylations with the appropriate Fe/αKGs. Thus, L-Pro was
submitted to hydroxylation with two different Fe/αKG proline
hydroxylases, P3H18a,b,c,d and P4H,19 to afford 37 and 38. To
synthesize 39, we leveraged a previous report describing a two-
enzyme system20 that converts N-succinylated aliphatic amino
acids to their β-hydroxylated free amino acid counterparts via
hydroxylation with the Fe/αKG SadA, followed by N-
3:30S complex.2b However, we noted a lack of electron density
around the ligand in this structure, which likely renders it
unreliable for structure-based analogue design. Conversely,
SAR investigation between 3 and its antimicrobial activity
would shed light onto the contribution of each structural motif
to the inhibitory activity of the tetrapeptide and aid future
efforts in designing superior analogue(s) or simplified
analogue(s) with comparable activity. First, we sought to
assess the importance of the five peripheral modifications for
inhibitory activity (Scheme 4A). To this end, we prepared five
simplified analogues of 3 (24−28), each containing one fewer
peripheral modification than the parent natural product.
Synthesis of analogues 24, 25, and 26 proceeded in a routine
fashion, requiring the use of readily available building blocks
Boc-L-Pip-OH, L-Cit-OMe, and Boc-L-His-OMe, respectively,
in a route that is almost identical with Schemes 1−3.
Previously, we reported the synthesis of Cl-L-His-OMe 32
for functional characterization of GetI.6c While useful for
analytical scale preparation of 32, our reported approach
suffers from low yield and limited scalability. In turn,
preparation of analogue 27 necessitated the development of
a novel strategy that remedies these synthetic shortcomings
toward 2-chloro-L-histidine. Direct chlorination of Boc-L-His-
OMe gave only C4 chlorination using SEAr conditions (NCS
or PIDA/NaCl) or the ketone following lithiation (Figure
SI4).15 An effective ANRORC reaction with phenyl chlor-
oformate afforded oxo-Boc-L-His-OMe (SI29) in 85% yield,
although only minor amounts of 32 were observed while
testing various chlorination conditions from this intermedia-
te.16a Success was finally achieved by developing an analogous
ANRORC reaction utilizing phenyl thionochloroformate (29)
to produce thio-Boc-L-His-OMe 30 in 90% yield.16b Chemo-
selective oxidation of 30 with NCS afforded the intermediate
sulfonyl chloride (31), which was then converted to 32
following desulfination under gentle heating.17a This novel
reaction sequence proceeds on a >500 mg scale without any
observable loss in isolated yield, solving the key limitations
observed in our previous route. The unique desulfinative
chlorination from 31 to 32 may proceed via the intermediacy
of a chlorine radical that participates in the ipso substitution of
the sulfonyl chloride, regenerating the chlorine radical
following sulfur dioxide extrusion.17b Although the exact
precursor to a chlorine radical is puzzling, this mechanism
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J. Am. Chem. Soc. 2021, 143, 1673−1679