Amendola et al.
Scheme 1
Å), 2θmax ) 46°, 46 463 measured reflections, 13 t778 independent
reflections (Rint ) 0.049), 11 693 strong reflections [Io > 2σ(Io)],
1262 refined parameters, R1 ) 0.0928 (strong data) and 0.1078
(all data), wR2 ) 0.2240 (strong data) and 0.2341 (all data), GOF
) 1.150, 0.87 and -0.38 maximum and minimum residual electron
density.
Single crystals suitable for X-ray diffraction study were always
characterized by diffracted intensities corresponding to the P21 space
group. In particular, the systematic extinctions due to the c glide
plane were not obeyed. Several attempts to solve the structure by
direct methods (SIR-97)18 in the P21 space group produced a first
partial atomic model, which exhibited the symmetry of the P21/c
space group. The presence of the forbidden reflections in the
diffraction pattern was thus ascribed to merohedral twinning.
Refinement by full-matrix least-squares procedures on F2 using all
reflections (SHELXL-97)19 was performed assuming a second
component in the crystal, rotated by 180° about [100]. The
agreement index strongly improved, and the atomic model was
completed by analyzing the ∆F map. The refined twin ratio result
was 0.52(1):0.48(1). All non-hydrogen atoms were refined with
anisotropic temperature factors; hydrogen atoms were placed using
the appropriate AFIX instructions. CCDC 289232 contains the
supplementary crystallographic data for this paper.
fraction that was kept in solution could be obtained (ES-MS m/z:
272.4 [M + H]+, calcd 272.3). TLC of this sample indicated that
no decomposition was observed when 4 was kept in solution. For
the following step (i.e., the formation of the urea-phenanthroline
conjugate (1)), after filtration, the solution of CH2Cl2 containing 4
was concentrated under vacuum and used immediately.
1-(3-[1,10]Phenanthrolin-2-yl-phenyl)-3-(4-(trifluoromethyl-
phenyl)-urea (1). To a CH2Cl2 solution of 3-[1,10]phenanthrolin-
2-yl-phenylamine (1.07 mmol on the basis of a 100% conversion
of 3) was added 1.1 equiv of R,R,R-trifluoro-p-tolylisocyanate (165
µL). The solution was stirred at room temperature for 2 h. The
white precipitate that appeared in the course of the reaction was
filtered and washed with CH2Cl2. The urea-phenanthroline con-
jugate 1 was obtained as a white solid (305 mg, 62% yield). For a
visual depiction of the total synthesis, see Scheme 1
Results and Discussion
1. Design of the Receptor. The CuI ion gives with 1,10-
phenanthroline a tetrahedral complex [CuI(phen)2]+. How-
ever, the coordination geometry is not exactly tetrahedral
(N-Cu-N bond angles differ from the canonic value of
109.5°) because of steric constraints imposed by the rigid
phenanthroline framework.20 Steric effects exerted by small
substituents on the 2,9 positions (e.g., methyl21 and triflu-
oromethyl)22 force the phenanthrolines to lie perpendicular
each other, minimizing the interligand repulsions. However,
aromatic substituents on the heterocyclic rings may induce
variable distortions; for instance, in the symmetric 2,9-
diphenyl-1,10-phenanthroline complex of CuI, the angle
between phen planes is ca. 59°,23 whereas in the monosub-
stituted 2-dimethylaminophenyl-phenanthroline, the angle is
ca. 68°.24
Notice that in ligand 1, the linking positions in the
phenylurea fragment and in the heterocyclic ring have been
judiciously selected, generating a rather small and strictly
defined binding site that is suitable for interaction with a
single anion. In this regard, modeling studies where carried
out using a semiempirical method (PM3) for the H-bond
complex [CuI(1)2‚‚‚Cl]+. The pertinent calculated structure
is shown in Figure 1.
1
. H NMR (400 MHz, d6-DMSO): 9.17 (d, 3H), 8.60 (d, 1H),
8.53 (dd, 1H), 8.45 (s, 1H), 8.35 (d, 1H), 8.05 (m, 3H), 7.80 (m,
2H), 7.52 (d, 1H), 7.48 (d, 1H), 7.55 (t, 1H). ES-MS m/z: 459.1
[M + H]+, calcd 459.1. Anal. Calcd for C26H17N4F3O: C, 68.12;
H, 3.74; N, 12.22. Found: C, 68.66; H, 3.77; N, 13.06.
[Cu(1)2](ClO4). 1 (24.1 mg, 2 equiv) was dissolved in a CH2-
Cl2/MeOH mixture (10:3 mL). The solution was degassed, and [Cu-
(CH3CN)4] (ClO4) (8.6 mg, 1 equiv) in a degassed solution of
CH3CN was added. The solution immediately turned red. It was
allowed to stir at room temperature for 1 h. The solvent was then
removed under vacuum to quantitatively yield [Cu(1)2](ClO4) (29
mg) as a red solid. ES-MS m/z: 979.2 [M - ClO4]+, calcd 979.3.
Once this complex was isolated, it was very difficult to dissolve it
in any solvent except DMSO. For the titration in the THF/CH3CN
mixture, the complex was prepared in situ. Caution: perchlorate
salts are potentially explosiVe and must be handled with care. In
particular, they should neVer be heated as solids.
X-ray Crystallographic Studies. Diffraction data of the [CuI-
(1)2]Cl complex salt were collected at ambient temperature on a
Bruker-AXS Smart-Apex CCD-based diffractometer. Omega rota-
tion frames (scan width 0.3°, scan time 50 s, sample-to-detector
distance 7 cm) were processed with the SAINT software (Bruker-
AXS Inc.), and intensities were corrected for Lorentz and polariza-
tion effects. Absorption effects were analytically evaluated by the
SADABS software,17 and correction was applied to the data (0.72
and 0.98 minimum and maximum transmission factors). Crystal
data for [Cu(I)L]Cl complex: C52H34ClCuF6N8O2, Mr ) 1015.87,
T ) 293 K, crystal dimensions 0.13 × 0.08 × 0.04 mm3,
monoclinic, P21/c (No. 14), a ) 15.412(5), b ) 25.957(5), c )
25.514(3) Å, â ) 107.58(1), V ) 9730(4) Å3, Z ) 8, Fcalcd ) 1.387,
F(000) ) 4144, µ ) 0.576 mm-1, Mo KR X-radiation (λ ) 0.7107
(18) Altomare, A.; Burla, M. C.; Camalli, M.; Cascarano, G. L.; Giaco-
vazzo, C.; Guagliardi, A.; Moliterni, A. G. G.; Polidori, G.; Spagna,
R. J. Appl. Crystallogr. 1999, 32, 115.
(19) Sheldrick, G. M. SHELX97: Programs for Crystal Structure Analysis;
University of Go¨ttingen: Go¨ttingen, Germany, 1997.
(20) Clarke, R.; Latham, K.; Rix, C.; White, J. Acta Crystallogr., Sect. C
2003, 59, m7-m9.
(21) Kovalevsky, A. Y.; Gembicky, M.; Novozhilova, I. V.; Coppens, P.
Inorg. Chem. 2003, 42, 8794.
(22) Kovalevsky, A. Y.; Gembicky, M.; Coppens, P. Inorg. Chem. 2004,
43, 8282.
(23) (a) Geoffroy, M.; Wermeille, M.; Buchecker, C. O.; Sauvage, J.-P.;
Bernardinelli, G. Inorg. Chim. Acta 1990, 167, 157. (b) Klemens, F.
K.; Palmer, C. E. A.; Rolland, S. M.; Fanwick, P. E.; McMillin, D.
R.; Sauvage, J.-P. New J. Chem. 1990, 14, 129.
(17) Sheldrick, G. M. SADABS: Siemens Area Detector Absorption
Correction Program; University of Go¨ttingen: Go¨ttingen, Germany,
1996.
6140 Inorganic Chemistry, Vol. 45, No. 16, 2006