Journal of Medicinal Chemistry
Page 4 of 6
1
and 4-amino-2,6-dimethoxy-phenol (63.8 mg, 0.51 mmol) ob-
taining 15.7 mg of pure compound (yield 16 %). Synthesis of
the intermediates compound II and 4-amino-2,6-dimethoxy-
phenol are in the SI. Rt = 1.96 min; MS (SI) m/z: 492.1 [M-
, [M-H]- calculated: 414.1. H NMR (400 MHz, DMSO-d6) δ
11.65 (s, 1H), 7.57 – 7.51 (m, 2H), 7.50 – 7.46 (m, J = 7.6 Hz,
3H), 7.43 – 7.37 (m, J = 7.3 Hz, 4H), 7.36 – 7.31 (m, J = 7.8
Hz, 4H), 7.24 (t, J = 7.4 Hz, 1H). 13C NMR (101 MHz,
CDCl3) δ 178.67 (CONH), 169.32 (CS), 167.82 (COH),
162.32 (CO), 139.22 (C), 138.14 (C), 135.21 (C), 129.88
(CH), 129.79 (CH), 129.51(CH), 129.39(CH), 129.15(CH),
128.75(CH), 128.63(CH), 126.58(CH), 122.08(CH), 83.61(C).
qNMR: 95.3 %.
1
2
3
4
5
6
7
8
1
H]+, [M-H]- calculated: 492.1. H NMR (400 MHz, CDCl3):
11.82 (s, 1H), 7.58 – 7.47 (m, 6H), 7.31 (dd, J = 7.4, 3.1 Hz,
4H), 6.76 (s, 2H), 5.47 (s, 1H), 3.86 (s, 6H). 13C NMR (101
MHz, CDCl3) δ 178.59 (CONH), 168.63 (CS), 162.39 (C),
147.22 (C), 139.26 (C), 138.16 (C), 137.04 (C), 133.42 (C),
129.87 (CH), 129.76 (CH), 129.36 (CH), 129.15 (CH), 128.77
(CH), 128.63 (CH), 127.34 (CH), 99.60 (CH), 56.59 (OCH3).
qNMR: 95.3 %.
9
ASSOCIATED CONTENT
Supporting Information.
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
28
29
30
31
32
33
34
35
36
37
38
39
40
41
42
43
44
45
46
47
48
49
50
51
52
53
54
55
56
57
58
59
60
This material is available free of charge via the Internet at
Molecular formula strings and additional experimental data (CSV)
Summary reporting all the synthesized compounds (Table S1)
Detailed synthetic procedures for compounds 1 to 16 and corre-
sponding intermediates.
4-hydroxy-N-(4-hydroxyphenyl)-6-oxo-1,3-diphenyl-2-
thioxo-pyrimidine-5-carboxamide (2).
Titled compound was synthesized following the general
procedure B (see SI) using compound II (100 mg, 0.27 mmol)
and 4-aminophenol (30.0 mg, 0.27 mmol) obtaining 25.1 mg
of pure compound (yield 22 %). Rt = 2.10 min; MS (SI) m/z:
H-NMR, C-NMR, mass spectrometry and chromatographic char-
acterization of compounds 1 to 16.
1
432.1 [M-H]-, [M-H]- calculated: 432,1. H NMR (400 MHz,
DMSO-d6) δ 11.49 (s, 1H), 9.64 (s, 1H), 7.48 (t, J = 7.5 Hz,
4H), 7.40 (t, J = 7.3 Hz, 2H), 7.34-7.32 (m, J = 8.2, 3.2 Hz,
6H), 6.78 (d, J = 8.8 Hz, 2H). 13C NMR (101 MHz, DMSO-d6)
δ 178.40 (CS), 168.12 (CONH), 155.76 (C), 139.19 (C),
129.16 (CH), 128.98 (CH), 128.39 (CH), 124.02 (CH), 115.69
(CH), 83.59 (C). qNMR: 95.0 %.
Summary of compounds 1 to 16 activity results (Table S2)
The structural model of topoII (Figure S1, S2)
Docking pose of compounds 1-5 (Figure S3)
Topoisomerase inhibition, Topoisomerase poisoning and ctDNA
binding assays procedures.
Cell lines and cell viability assay description.
4-hydroxy-N-(3-methoxyphenyl)-6-oxo-1,3-diphenyl-2-
thioxo-pyrimidine-5-carboxamide (3).
AUTHOR INFORMATION
Corresponding Authors
Titled compound was synthesized following the general
procedure B (see SI) using compound II (100 mg, 0.27 mmol)
and m-anisidine (0.031 ml, 0.27 mmol) obtaining 66.1 mg of
pure compound (yield 55 %). Rt = 2.10 min; MS (SI) m/z:
*Phone: +39 010 71781 577 E-mail: marco.devivo@iit.it
*Phone: +39 049 827571 E-mail: claudia.sissi@unipd.it
1
446.1 [M-H]+, [M-H]+ calculated: 446,1. H NMR (400 MHz,
Author Contributions
CDCl3) δ 11.85 (s, 1H), 7.62 – 7.52 (m, 4H), 7.52 – 7.45 (m,
2H), 7.40 – 7.28 (m, 4H), 7.27 (d, J = 4.4 Hz, 2H), 7.13 – 7.01
(m, 2H), 6.78 (dd, J = 8.2, 2.4 Hz, 1H), 3.79 (s, 3H). 13C NMR
(101 MHz, CDCl3) δ 169.33 (CONH), 167.83 (C), 160.36 (C),
139.22 (C), 136.31 (C), 130.26 (CH), 129.87 (CH), 129.77
(CH), 129.38 (CH), 129.14 (CH), 128.75 (CH), 128.63 (CH),
114.25 (CH), 112.31 (CH), 107.77 (CH), 83.65 (C), 55.57
(OCH3). qNMR: 96.1 %.
The manuscript was written through contributions of all authors. /
All authors have given approval to the final version of the manu-
script. #These authors contributed equally.
Notes
The authors declare the following competing financial interest(s):
One patent application protecting the class of compounds dis-
closed in this manuscript has been filed by the following authors:
Marco De Vivo, Jose Antonio Ortega, Jose M. Arencibia and
Claudia Sissi.
4-hydroxy-N-(3-hydroxyphenyl)-6-oxo-1,3-diphenyl-2-
thioxo-pyrimidine-5-carboxamide (4).
Titled compound was synthesized following the general
procedure B (see SI) using compound II (100 mg, 0.27 mmol)
and 3-aminophenol (30 mg, 0.27 mmol) obtaining 29.6 mg of
pure compound (yield 26 %). Rt = 1.84 min; MS (SI) m/z:
ACKNOWLEDGMENT
This work was supported in part by the Italian Association
for Cancer Research (AIRC) through the “IG 18883” Grant
and by Università degli Studi di Padova (Grant # 60A04-
7255). We thank Grace Fox for her proofreading and copyedit-
ing
1
432.3 [M-H]-. [M-H]- calculated: 432.1. H NMR (400 MHz,
CDCl3) δ 11.84 (s, 1H), 7.68 – 7.43 (m, 6H), 7.33 (t, J = 6.9
Hz, 4H), 7.24 (t, J = 8.1 Hz, 1H), 7.13 (s, 1H), 6.98 (d, J = 8.0
Hz, 1H), 6.76 – 6.68 (m, 1H), 5.08 (s, 1H). 13C NMR (101
MHz, CDCl3) δ 178.29 (CS), 169.02 (CONH), 167.55 (C),
161.96 (C), 156.07 (C), 138.87 (C), 137.76 (C), 136.13 (C),
130.15 (CH), 129.56 (CH), 129.47 (CH), 129.09 (CH), 128.84
(CH), 128.43(CH), 128.31 (CH), 113.96 (CH), 113.24 (CH),
108.90 (CH), 83.38 (C). qNMR: 95.1 %.
ABBREVIATIONS
TopoII, type II topoisomerase; DNA, deoxyribonucleic acid;
DCM, dichloromethane; MeOH, methanol, EtOAC,
ethylacetate; DMF, N,N-dimethylformamide; DMAP, 4-(N,N-
dimethylamino)pyridine; Rt, retention time; SI, supporting in-
formation.
4-hydroxy-6-oxo-N,1,3-triphenyl-2-thioxo-pyrimidine-5-
carboxamide (5).
REFERENCES
Titled compound was synthesized following general proce-
dure B (see SI) using compound II (100 mg, 0.27 mmol) and
aniline (25 µl, 0.37 mmol) obtaining 118.4 mg of pure com-
pound (yield 86 %). Rt = 2.19 min; MS (SI) m/z: 414.1 [M-H]-
(1) Deweese, J. E.; Osheroff, N. The DNA cleavage reaction
of topoisomerase II: wolf in sheep's clothing. Nucleic Acids
Res. 2009, 37, 738–748.
ACS Paragon Plus Environment