Journal of Medicinal Chemistry
Article
followed by the addition of zinc (42.8 g, 654 mmol) in four portions.
The mixture was stirred for 50 min, during which the mixture became
a clear almost colorless solution. The volatiles were removed by
evaporation, and the aqueous mixture was quenched by pouring into
32% aqueous ammonia solution (400 mL). The organics were
extracted with iPrOAc (2 × 100 mL). The combined organic phases
were dried (sodium sulfate), filtered, and evaporated to dryness in
vacuo using MeCN (3 × 100 mL) to co-evaporate, affording the title
compound 21 (45.1 g). 1H NMR (CDCl3 600 MHz): δ ppm 7.31 (d,
2H), 7.20 (d, 2H), 3.71−3.65 (m, 4H), 3.26 (t, 1H), 3.09−3.04 (m,
1H), 2.96−2.91 (m, 1H), 2.43−2.37 (m, 4H).
with heptane (2 × 50 mL), and dried under vacuum to constant
weight to yield the title compound (1) (40 g). H NMR (DMSO-d6
1
600 MHz): δ ppm 9.02 (d, 2H), 8.94 (t, 1H), 7.71 (t, 1H), 7.44 (d,
2H), 7.33 (d, 2H), 3.92−3.86 (m, 1H), 3.67−3.64 (m, 1H), 3.60−
3.48 (m, 5H), 2.40−2.30 (m, 4H). LCMS (MH+): m/z = 498.3, tR
(min, Method B) = 0.49. HPLC tR (min, Method C) = 5.16. [α]D20
=
−34.89 (c = 1% in MeOH). Elemental Analysis (CHN) and KF H2O:
Found C 50.67%, H 3.90%, N 13.76%, KF H2O < 0.1%. Expected C
50.66%, H 3.85%, N 14.07%.
Stereochemistry Determination of (S)-2-(4-Chlorophenyl)-2-
morpholinoethylamine (22). The absolute stereochemistry of chiral
amine 22 was determined by XRPD analysis of the corresponding
Mosher’s amide,43 which confirmed the S-stereochemistry. Stereo-
chemistry assignment of (2R)-N-[(2S)-2-(4-chlorophenyl)-2-mor-
pholino-ethyl]-3,3,3-trifluoro-2-methoxy-2-phenyl-propanamide was
(S)-2-(4-Chlorophenyl)-2-morpholin-4-yl-ethylamine-(S)-2-ace-
tylamino-4-methyl-pentanoate. To a solution of 2-(4-chlorophen-
yl)-2-morpholinoethylamine 21 (106.7 g, 0.443 mol) dissolved in
acetonitrile (3005 mL) was added (S)-2-acetamido-4-methylpenta-
noic acid (N-acetyl-L-leucine 76.80 g, 0.443 mol), and the mixture was
heated to reflux and water (105 mL) was added, giving a clear
solution. The heating was stopped, and the solution was allowed to
cool slowly to room temperature. At ca. 45 °C, crystallization started
and continued over 4 h while cooling slowly to 20 °C. The product
was isolated by filtration and washed on the filter with acetonitrile (2
× 100 mL) and dried in vacuo. The solid was resuspended in 240 mL
of acetonitrile:water (v/v 96.5:3.5). The slurry was then heated slowly
to reflux for 1 h, heating was removed, and stirring was continued
while slowly cooling to room temperature (RT). The slurry was
stirred for 16 h at RT. The precipitated compound was isolated by
filtration, washed on the filter with 2 × 20 mL of acetonitrile:water
(v/v 96.5/3.5) and 1 × 30 mL of acetonitrile, and dried. The product
was then dried to constant weight in vacuo at 40 °C to yield the title
+
−
determined from a combination of R-factor tests [R1 = 0.0414, R1
= 0.0561], Flack parameter [x+ = −0.02(2), x− = 1.01(2)], and
Bayesian statistics on Bijvoet differences, p3(ok), p3(twin), and
p3(wrong) 1.000, 0.000, and 0.000, respectively. Calculation based on
6994 Bijvoet pairs. XRPD was measured on a sample of the batch and
gave the same pattern as the one used for the structure determination.
This means that the crystal selected for the structure determination is
representative of the batch.
P2X7 Inhibition Measured by FLIPR Assays. Human
(NM_002562.5), mouse (NM_002562.5), and rat
(NM_002562.5) P2X7 receptors were cloned into a pCDNA3.1
vector and stably expressed in HEK 293s cells (passage number <25,
ATCC Manassas, VA). The stable cells (15 000/well) were plated in
384-well poly-D-lysine (PDL)-coated black FLIPR plates (Greiner Bio
One, Monroe, NC) using 1.5% fetal bovine serum (FBS) (Atlanta
Biologicals, Lawrenceville, GA), in Dulbecco’s modified Eagle’s
medium (DMEM) (GibcoThermo Fischer Scientific, Waltham
MA) 24 h before the assay. The plates were washed 2× with the assay
buffer. For the human P2X7R assay, sucrose buffer was used to
improve the signal-to-noise ratio (sucrose assay buffer, pH 7.4, 5 mM
potassium chloride, 9.6 mM NaH2PO4·2H2O, 25 mM 2-[4-(2-
hydroxyethyl)piperazin-1-yl]ethanesulfonic acid buffer (HEPES), 0.5
mM CaCl2, 5 mM glucose, 280 mM sucrose, and 1.0 mM probenecid
(Sigma, St. Louis, MO)), whereas for rat and mouse P2X7R, regular
FLIPR buffer was used [Hank’s balanced salt solution buffer (HBSS),
pH 7.4 1× buffer supplemented with 20 mM HEPES plus 2.5 mM
probenecid (Sigma) and 0.05% bovine serum albumin (Sigma)]. After
washing, the plates were loaded with 30 μL of Fluo-4 NW in Fluo-4
NW Calcium Assay Kit buffer (Molecular Probes, Eugene, OR) and
were incubated at 37 °C for 30 min in a humidified chamber (5%
CO2/95% air) and for 30 min at RT. Mobilization of intracellular
Ca+2 in response to the various P2X7 antagonists was measured
online using the FLIPR Tetra reader. In the assay, baseline
fluorescence was measured for 15 s, and then 15 μL of compounds
(40 μM) was added and fluorescence was monitored for 3 min for
agonist activity. Subsequently, 15 μL of BzATP (hP2X7 1 × 8 μM,
rP2X7 1 × 15 μM) was added, and after a 30 min incubation at room
temperature, the fluorescence was read for 3 min for IC50
determination. Data were analyzed using Lundbeck’s LSP curve-fit
software, which is similar to Prism nonlinear regression curve-fit
analysis.
1
compound as a white solid (55.1 g). H NMR (CDCl3 600 MHz): δ
ppm 7.68 (d, 1H), 7.44 (d, 2H), 7.26 (d, 2H), 4.08−4.03 (m, 1H),
3.71−3.68 (m, 1H), 3.58−3.52 (m, 4H), 3.38−3.32 (m, 1H), 2.88−
2.83 (m, 1H), 2.40−2.35 (m, 2H), 2.22−2.15 (m, 2H), 1.81 (s, 3H),
1.62−1.55 (m, 1H), 1.50−1.45 (m, 1H), 1.41−1.36 (m, 1H), 0.85 (d,
3H), 0.81 (d, 3H). HPLC tR (min, Method C) = 2.53.
(S)-2-(4-Chlorophenyl)-2-morpholinoethylamine (22). To a sol-
ution of 2-(4-chlorophenyl)-2-morpholinoethylamine (S)-2-acetami-
do-4-methylpentanoate (55.1 g) in iPrOAc/H2O (400 mL) was
added 24% aqueous ammonia. The phases were separated, and the
water phase was extracted once more with iPrOAc (50 mL) and the
combined organic phases were washed with water (2 ×50 mL), dried
over MgSO4, and the solvent was removed in vacuo. NaCl (ca. 20 g)
was dissolved in the water phase and then extracted with iPrOAc (3 ×
100 mL). The combined organic phases were washed with brine (2 ×
50 mL), dried over MgSO4, evaporated, and dried to constant weight
to yield the title compound 22 (31.3 g). HPLC tR (min, Method C) =
2.53, Chiral HPLC tR (min, Method D) = 14.96
(S)-N-(2-(4-Chlorophenyl)-2-morpholinoethyl)-2-(pyrimidin-2-
yl)-4-(trifluoromethyl)thiazole-5-carboxamide (1). (S)-2-(4-Chlor-
ophenyl)-2-morpholinoethylamine 22 (31.3 g, 130 mmol) was
dissolved in dry THF (700 mL) at RT. 2-(Pyrimidin-2-yl)-4-
(trifluoromethyl)thiazole-5-carboxylic acid 23 (39.4 g, 143 mmol,
preparation described in supplemental materials) was added followed
by triethylamine (54.4 mL, 390 mmol). 2,4,6-Tripropyl-1,3,5,2,4,6-
trioxatriphosphinane-2,4,6-trioxide (T3P) (122 mL, 50% solution in
ethyl acetate, dissolved in THF 100 mL) was added slowly and
resulted quickly in a clear solution. The reaction was stirred at RT for
3 h. To the reaction was added iPrOAc (500 mL), and the organic
phase was washed with 0.5 M NaOH (200 mL) and 0.1 M NaOH
(200 mL), followed by washing with water (2 × 200 mL). The
product was then extracted with 1 M aqueous H2SO4 (4 × 200 mL),
and the combined water phases were washed with iPrOAc (2 × 200
mL) and was again made basic with 24% aqueous ammonia (strong
exotherm, cooled with ice) and extracted with iPrOAc (2 × 400 mL).
The combined organic phases were washed with water (1 × 300 mL)
and brine (2 × 200 mL), dried over MgSO4, and the solvent was
partly removed in vacuo (volume, ca. 400 mL) and heptane (600 mL)
was added. The mixture was stirred on a rotary evaporator for 16 h
while slowly cooling to room temperature. The reaction was cooled
on ice for 30 min, and the product was isolated by filtration, washed
P2X7R Binding Assays. In vitro binding was performed in
membranes prepared from HEK293 cells stably transfected with
mouse, rat, or human P2X7 using [3H]-A-804598 as the radio-ligand.
Binding was performed in assay buffer (50 mM Tris-HCL, 0.1% BSA,
pH 7.4) at 4 °C for 1 h in a total volume of 250 μL using either 10 μg
of rat P2X7R, 40 μg of human P2X7R, or 60 μg of mouse P2X7R
membranes per well. The membranes were prepared using 25 mM
Tris-HCl, pH 7.4, 250 mM sucrose, 2.5 mM ethylenediaminetetra-
acetic acid (EDTA), 2 μg/mL aprotinin, 0.5 μg/mL leupeptin, and
200 nM phenylmethanesulfonyl fluoride (PMSF). Nonspecific
binding was defined using 10 μM cold A-804598. Kd was determined
by concentration-dependent saturation binding using 10 concen-
trations of [3H]-A-804598 (0.5−50 nM).
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J. Med. Chem. 2021, 64, 4891−4902