ACS Medicinal Chemistry Letters
Page 2 of 7
bone reaches out into the solvent (Figure 2). Bioisosteric interaction with electron rich Tyr-1230, which is critical
1
2
3
4
5
6
7
8
9
1
1
1
1
1
1
1
1
1
1
2
2
2
2
2
2
2
2
2
2
3
3
3
3
3
3
3
3
3
3
4
4
4
4
4
4
4
4
4
4
5
5
5
5
5
5
5
5
5
5
6
replacement is a powerful method for the identification of
novel chemical series in medicinal chemistry. Based on
the previous work by Merck, 8-fluoroimidazo[1,2-
a]pyridine has been established as a physicochemical
mimic of imidazo[1,2-a]pyrimidine, using both in silico
for c-Met inhibition. Compared with 15g, the binding
pose of 15c (Figure 3B) was entirely different since the
bulky C-8 CF3 substituent could not enter the inside
pocket, which could be the main reason for the loss in
inhibitory activity. Compared to 8-fluoroimidazo[1,2-
a]pyridine core (15g), the 8-chloroimidazo[1,2-a]pyridine
is more electron rich, leading to a decreased interaction
with Tyr-1230. Taken together, these results could give an
explanation to the different inhibition of these com-
pounds.
1
5
and traditional techniques. To the best of our
knowledge, there are still no examples of using this strat-
egy to discover novel c-Met inhibitors. Hence, we tried to
replace the 8-position N atom with a C-F bond to mimic
the properties of N-8 atom, including electrostatic surface
and lipophilicity to keep the electron deficiency of bicy-
clic aromatic rings. Meanwhile, we tried to introduce Cl,
CN and CF3 on the imidazo[1,2-a]pyridine to evaluated
the effluence of the electron density of bicyclic aromatic
rings on c-Met inhibition. On the basis of the cocrystal
structural information and principles of bioisosterism, we
designed a novel imidazo[1,2-a]pyridine scaffold as cꢀMet
inhibitors. Herein, we describe our recent effort on the
synthesis and SARs of this series of compounds.
0
1
2
3
4
5
6
7
8
9
0
1
2
3
4
5
6
7
8
9
0
1
2
3
4
5
6
7
8
9
0
1
2
3
4
5
6
7
8
9
0
1
2
3
4
5
6
7
8
9
0
Figure 3
Subsequently, the structure activity relationship at the
6
-position of the imidazo[1,2-a]pyridine scaffold was in-
vestigated (Table 2). Introduction of heteroaryl substitu-
ents (16a-c) displayed good c-Met inhibition. The pyridi-
nyl analog 16b, which incorporated a cyano group, was
more effective and the EBC-1 cell IC50 reached to 188.5
nM. Among the phenyl derivatives (16d-g), benzonitrile
analogs 16d and 16f demonstrated improved c-Met inhibi-
tion, with an EBC-1 cell IC50 of 106.7 and 145.0 nM, respec-
tively. These observations indicated that incorporation of
polar groups on 6-phenyl had a significant influence on
cellular activity. Encouraged by these results, analogs in-
corporated polar amide groups on 6-phenyl were pre-
pared for SAR exploration. 6-Benzamide analog 22a dis-
played 4-fold loss in cellular activity compared to 16d.
Derivatives bearing 4-fluoro-3-N-methylbenzamide (22b)
and 4-chloro-3-N-methylbenzamide (22c) groups dis-
played less potent c-Met inhibition than 22a. However,
derivatives bearing 3-methoxy-4-N-methylbenzamide
Figure 2
To achieve a structure−activity relationship (SAR) ex-
ploration, efficient synthetic routes were employed for
preparation of the analogues (Scheme 1 and 2 in Support-
ing Information).
These novel imidazo[1,2-a]pyridine derivatives against
c-Met have not been previously synthesized and evaluat-
ed; therefore, the initial goal was to identify the optimal
substituent. To identify potent c-Met inhibitors efficient-
ly, we initially selected 1-methylpyrazole as a substituent
at the C-6 position while varying the C-7 and C-8 substit-
uents (Table 1). The initial biochemical assay found that
compound 15a exhibited moderate activity with an enzy-
matic IC50 of 2.18 μM against c-Met. The activity did not
significantly change with the introduction of different
substituents at the C-7 or C-8 position (15b-15f). To our
delight, compound 15g exhibited c-Met inhibition with an
enzymatic IC50 of 7.8 nM and an EBC-1 cell IC50 of 0.27
μM, respectively. These encouraging results prompted us
to investigate the SAR for substituents on the pyrazole
while keeping the fluorine substitute at the C-8 position.
The incorporation of polar groups, such as an ethanolic
group (15h) and a piperidine group (15i) on the pyrazole
of 15g resulted in 1.2-fold and 5.4-fold loss of cellular po-
tency, respectively.
(22d) and 3-fluoro-4-N-methylbenzamide (22e) groups
exhibited remarkably improved cellular activity. In par-
ticular, compound 22e showed an enzymatic IC50 of 3.9
nM and good EBC-1 cell IC50 of 45.0 nM. These results
indicated that the 3-F and 3-OMe might be important for
c-Met inhibition.
Table 2
To further modulate physical chemical properties of
these inhibitors, substituted amides were introduced,
especially amides with polar groups such as basic amines
on their N-terminus (Table 3). Firstly, the N,N’-
disubstituted amide analogs were evaluated. Compounds
22f and 22g showed an EBC-1 cell IC50 of 405.5 and 868.9
nM respectively, suggesting that N-monosubstituents
were preferred here. Next, we investigated the influence
of mono-substitution of the N-terminus of the amide on
c-Met inhibition. For example, compound 22h, which
contained a morpholinoethyl group on the N-terminus of
the amide, demonstrated c-Met inhibition by 2-fold com-
pared with 22e, and there was no significant differences
between their EBC-1 activity. Replacement of the morpho-
linoethyl group with a non-cyclic dimethylaminoethyl
group (compound 22i, enzymatic IC = 2.4 nM and EBC-1
Table 1
To gain structural information for further optimization,
the 3D proposed binding modes of representative com-
pounds 15a, 15c, 15e and 15g were generated by docking
simulation (Figure 3). For each compound, the best pose
with the lowest binding energy was selected for further
16
17
analysis with Glide and PyMOL . The binding mode
indicated that compound 15g was bound to the active site
of c-Met in a similar to PF-04217903 (Figure 3A). The ni-
trogen of quinoline H-bonds well with the hinge region
Met-1160, whereas the N-1 nitrogen of the imidazo[1,2-
a]pyridine scaffold formed a hydrogen bond with Asp-
5
0
cell IC50 = 49 nM) slightly improved the cell inhibitory
activity. Compound 22j, with a longer C-chain of the am-
ide, reduced EBC-1 cell inhibitory activity by 3-fold. We
also investigated the SARs of the compounds by restrict-
1
222. In addition, imidazo[1,2-a]pyridine core kept a π−π
ACS Paragon Plus Environment