R. Kaczmarek, D.J. Twardy, T.L. Olson et al.
European Journal of Medicinal Chemistry 209 (2021) 112884
0.800 g). White solid of 4 (0.955 g, 1.73 mmol, 92%), mp 60-63 ꢀC.
H-30), 4.71 (dd, J ¼ 11.8, 1.9 Hz, 1H, H-50), 4.61 and 4.58 (dAB,
J ¼ 16.0, 5.6 Hz, 2H, CH2O), 4.47e4.44 (m, 1H, H-40), 4.42 (dd,
J ¼ 11.9, 4.6 Hz, 1H, H-50), 3.46 (t, J ¼ 6.3 Hz, 1H, OH), 3.01 (ddd,
J ¼ 14.5, 5.5, 1.5 Hz, 1H, H-200), 2.41 (s, 3H, CH3), 2.14 (s, 3H, Ac), 2.13
(s, 3H, Ac), 2.03 (ddd, J ¼ 14.5, 7.9, 6.6 Hz, 1H, H-20); 13C 172.02,
170.60, 170.25, 156.08, 154.62, 141.02, 134.39, 129.63 (2C), 125.99
(2C), 125.28, 109.47, 97.53, 94.53, 89.02, 84.06, 74.62, 74.51, 63.96,
NMR (CDCl3,
d
): 1H 8.11 (s, 1H, H-4), 7.97 (d, J ¼ 8.1 Hz, 2H, C6H4),
7.28 (d, J ¼ 8.1 Hz, 2H, C6H4), 6.36 (dd, J ¼ 7.6, 6.0 Hz, 1H, H-10), 5.26
(td, J ¼ 6.2, 2.0 Hz,1H, H-30), 4.48 (dd, J ¼ 12.0, 2.7 Hz,1H, H-50), 4.45
(dd, J ¼ 5.4, 2.6 Hz,1H, H-40), 4.41 (dd, J ¼ 11.4, 3.3 Hz,1H, H-50), 2.97
(ddd, J ¼ 14.5, 5.7, 1.3 Hz,1H, H-200), 2.40 (s, 3H, CH3), 2.13 (s, 3H, Ac),
2.12 (s, 3H, Ac), 2.11 (partially obscured ddd, J ¼ 7.7, 7.5 Hz, 1H, H-
20); 13C 170.54, 170.48, 170.24, 154.87, 153.27, 140.93, 136.33, 129.47
(2C), 127.22 (2C), 125.17, 112.67, 88.72, 83.56, 74.48, 63.82, 53.88,
51.55, 39.56, 21.68, 21.19, 20.95. NMR (DMSO‑d6, d
): 1H 8.43 (s, 1H,
H-4), 8.01 (d, J ¼ 8.2 Hz, 2H, C6H4), 7.37 (d, J ¼ 8.2 Hz, 2H, C6H4), 6.21
(t, J ¼ 7.2 Hz, 1H, H-10), 5.53e5.49 (m, 1H, H-30), 5.24e5.19 (m, 1H,
H-40), 4.45e4.39 (m, 3H, CH2, H-50), 4.38e4.29 (m, 2H, H-500, OH),
2.63e2.57 (m, 1H, H-20), 2.46e2.40 (m, 1H, H-200), 2.38 (s, 3H, CH3),
39.55, 21.61, 21.25, 20.96. NMR (DMSO‑d6, d
): 1H 8.16 (s, 1H, H-4),
7.91 (d, J ¼ 7.7 Hz, 2H, C6H4), 7.36 (d, J ¼ 7.3 Hz, 2H, C6H4), 6.19 (t,
J ¼ 6.5 Hz, 1H, H-10), 5.25e5.21 (m, 1H, H-30), 4.47e4.42 (m, 1H, H-
40), 4.37 (dd, J ¼ 12.1, 3.0 Hz, 1H, H-50), 4.28 (dd, J ¼ 12.2, 5.2 Hz, 1H,
H-50), 2.62 (dd, J ¼ 14.2, 5.4 Hz, 1H, H-20), 2.42 (ddd, J ¼ 14.5, 7.2, 7.2
Hz, 1H, H-200), 2.36 (s, 3H, CH3), 2.12 (s, 3H, CH3), 2.08 (s, 3H, CH3). IR
2.09 (s, 3H, CH3), 2.08 (s, 3H, CH3). IR (n
, cmꢁ1, ATR) 2938 vw, 2925
vw, 1739 s, 1664 vs, 1599 s, 1573 s, 1395 m, 1220 vs, 1018 vs. UVevis
(MeOH, 23.5 ꢃ 10ꢁ6 M) lmax 297 (ε 6470), 322 (ε 4940), 362 nm (ε
8700 Mꢁ1cmꢁ1). Fluorescence (MeOH, ca. 5.39 ꢃ 10ꢁ6 M) lex
(n
, cmꢁ1, ATR) 3089 w, 3028 w, 3089 w, 2951 w, 1738 s, 1665 vs,
1590 s, 1375 m, 1220 vs, 1184 s, 1014 m. UVevis (MeOH,
21.7 ꢃ 10ꢁ6 M) lmax 257 (ε 18,500), 356 nm (ε 14,400 Mꢁ1cmꢁ1).
Fluorescence (MeOH, ca. 3.65 ꢃ 10ꢁ6 M) lex 360 nm, lem 444 nm,
360 nm, lem 456 nm,
F
¼ 0.49. HRMS (ESI-TOF) [M þ H]þ calcd for
C
25H25N2O8 481.1605, found: 481.1605.
F
¼ 0.05. HRMS (ESI-TOF) [M þ H]þ calcd for C22H22IN2O7
3.6. 3-(30,50-di-O-acetyl-20-deoxy-
b-D-ribofuranosyl)-5-(4-
hydroxybut-1-yn-1-yl)-6-(4-methylphenyl)-2,3-dihydrofuro[2,3-d]
pyrimidin-2-one (6b)
553.0466, found: 553.0466.
3.3. 3-(30,50-di-O-acetyl-20-deoxy-
b-D-ribofuranosyl)-5-iodo-6-(4-
pentylphenyl)-2,3-dihydrofuro-[2,3-d]pyrimidin-2-one (5)).
From 3-butyn-1-ol (0.095 mL, 1.25 mmol). Light yellow solid:
0.235 g, 0.476 mmol, 95%. NMR (CDCl3, d
): 1H 8.27 (s, 1H, H-4), 8.02
From 20-deoxy-30,50-di-O-acetyl-5-(4-pentylphenyl)ethynylur-
idine (3, 0.906 g). White solid of 5 (0.869 g, 1.43 mmol, 76%). NMR
(d, J ¼ 8.3 Hz, 2H, C6H4), 7.24 (d, J ¼ 8.3 Hz, 2H, C6H4), 6.31 (dd,
J ¼ 7.9, 5.6 Hz, 1H, H-10), 5.24 (td, J ¼ 6.4, 2.1 Hz, 1H, H-30), 4.57 (dd,
J ¼ 11.9, 2.5 Hz, 1H, H-50), 4.43e4.41 (m, 1H, H-40), 4.39 (dd, J ¼ 11.5,
4.0 Hz,1H, H-50), 3.90 (br t, J ¼ 5.8 Hz, 2H, CH2O), 2.97 (ddd, J ¼ 14.4,
5.6, 1.8 Hz, 1H, H-200), 2.97 (signal partially obscured, 1H, OH), 2.81
(t, J ¼ 6.0 Hz, 2H, CH2), 2.40 (s, 3H, CH3), 2.12 (s, 3H, Ac), 2.08 (s, 3H,
Ac), 2.05 (ddd, J ¼ 14.6, 7.8, 6.7 Hz, 1H, H-20); 13C 171.08, 170.54,
170.16, 156.21, 154.62, 140.68, 134.68, 129.53 (2C), 125.88 (2C),
125.53, 109.39, 97.26, 95.36, 88.86, 83.79, 74.52, 71.18, 63.85, 60.74,
(CDCl3,
d
): 1H 8.10 (s, 1H, H-4), 7.97 (d, J ¼ 8.4 Hz, 2H, C6H4), 7.26 (d,
J ¼ 8.1 Hz, 2H, C6H4), 6.35 (dd, J ¼ 7.8, 5.8 Hz, 1H, H-10), 5.24 (td,
J ¼ 6.1, 1.9 Hz, 1H, H-30), 4.47 (dd, J ¼ 11.9, 2.9 Hz, 1H, H-50), 4.44 (dd,
J ¼ 5.0, 2.3 Hz, 1H, H-40), 4.39 (dd, J ¼ 11.5, 3.0 Hz, 1H, H-50), 2.95
(ddd, J ¼ 14.6, 5.6, 1.3 Hz, 1H, H-200), 2.61 (t, 2H, J ¼ 7.8 Hz, CH2),
2.14e2.06 (partially obscured m, 1H, H-20), 2.12 (s, 3H, Ac), 2.10 (s,
3H, Ac),1.60 (p, J ¼ 7.4 Hz, 2H, CH2), 1.33e1.25 (m, 4H, 2CH2), 0.86 (t,
J ¼ 6.7 Hz, 3H, CH3); 13C 170.57, 170.47, 170.33, 154.88, 153.15,
145.90, 136.39, 128.83 (2C), 127.16 (2C), 125.29, 112.69, 88.72, 83.54,
74.56, 63.88, 53.95, 39.51, 35.93, 31.48, 30.95, 22.59, 21.35, 21.04,
14.14. IR (cmꢁ1, ATR) 2953 w, 2923 w, 2850 w, 1734 s, 1650 vs,
1590 s, 1381 m, 1210 m, 1181 s, 1010 s. HRMS (ESI-TOF) [M þ H]þ
calcd for C26H30IN2O7 609.1093, found: 609.1117.
39.48, 24.45, 21.63, 20.96 (2C). IR (n
, cmꢁ1, ATR) 3391 br w, 2933 w,
1740 s, 1664 vs, 1641 m, 1574 m, 1396 m, 1367 m, 1216 vs, 1188 s,
1100 m, 1032 s, 1015 s. HRMS (ESI-TOF) [M þ H]þ calcd for
C
26H27N2O8 495.1762, found: 495.1762.
3.7. 3-(30,50-di-O-acetyl-20-deoxy-
b-D-ribofuranosyl)-5-((9-
3.4. 5-Alkynyl-6-arylfuropyrimidine nucleosides 6a-h or 7a,b,h,i.
General procedure
hydroxy-9H-fluoren-9-yl)ethynyl)-6-(4-methylphenyl)-2,3-
dihydrofuro[2,3-d]pyrimidin-2-one (6c)
A round bottom flask (25 mL) was charged with iodofuropyr-
imidine nucleoside (4, 0.276 g, 0.500 mmol; or 5, 0.304 g,
0.500 mmol), Pd(PPh3)4 (0.035 g, 0.030 mmol), CuI (0.006 g,
0.03 mmol), DMF (5 mL), Et3N (0.174 mL, 1.25 mmol), and the
respective terminal alkynes. The reaction mixture was stirred at
room temperature for 22 h. Solvent was removed (by oil pump
vacuum) and the residue was dissolved in chloroform (10 mL), and
subjected to silica gel column chromatography (230e400 mesh,
chloroform). The product was dried by oil pump vacuum for 2 h to
give 6a-i or 7a,b,h,i.
From 9-ethynyl-9-fluorenol (0.259 mg,1.25 mmol). Yellow solid:
0.261 g, 0.415 mmol, 83%. NMR (CDCl3, d
): 1H 8.37 (s, 1H, H-4), 7.82
(d, J ¼ 8.3 Hz, 2H, p-C6H4), 7.81 (dd, J ¼ 11.5, 7.4 Hz, 2H, o-C6H4), 7.69
(dd, J ¼ 7.5, 3.3 Hz, 2H, o-C6H4), 7.46 (virtual quartet, J ¼ 7.4 Hz, 2H,
o-C6H4), 7.41 (virtual triplet, J ¼ 7.4 Hz, 2H, o-C6H4), 7.07 (d,
J ¼ 8.4 Hz, 2H, p-C6H4), 6.36 (dd, J ¼ 7.6, 5.5 Hz, 1H, H-10), 5.28 (td,
J ¼ 6.4, 2.0 Hz, 1H, H-30), 4.66 (dd, J ¼ 12.2, 2.5 Hz, 1H, H-50), 4.55
(dd, J ¼ 12.2, 4.4 Hz, 1H, H-50), 4.51e4.48 (m, 1H, H-40), 4.32 (s, 1H,
OH), 3.02 (ddd, J ¼ 14.6, 5.6, 1.7 Hz, 1H, H-200), 2.35 (s, 3H, CH3), 2.15
(s, 3H, Ac), 2.11 (s, 3H, Ac), 2.09 (ddd, J ¼ 14.9, 7.4, 7.4 Hz, 1H, H-20);
13C 171.85, 170.52, 170.18, 157.07, 154.54, 146.64, 146.34, 140.93,
139.27, 139.21, 134.48, 129.89, 129.83, 129.37 (2C), 128.61, 128.52,
125.88 (2C), 125.03, 124.29, 124.20, 120.48 (2C), 109.01, 99.19, 94.28,
89.06, 84.06, 75.04, 74.52, 72.13, 63.97, 39.51, 21.58, 21.11, 20.92. IR
3.5. 3-(30,50-di-O-acetyl-20-deoxy-
b-D-ribofuranosyl)-5-(3-
hydroxyprop-1-yn-1-yl)-6-(4-methylphenyl)-2,3-dihydrofuro[2,3-
d]pyrimidin-2-one (6a)
(n
, cmꢁ1, CH2Cl2) 2361 w, 2225 w, 2152 w, 1745 m, 1674 vs, 1603 m,
From 2-propyn-1-ol (propargyl alcohol; 0.072 mL, 1.2 mmol).
1576 m,1235 s, 1187 m. UVevis (MeOH,18.9 ꢃ 10ꢁ6 M) lmax 365 nm
Light yellow solid: 0.182 g, 0.379 mmol, 76%. NMR (CDCl3, d
): 1H
(ε 17,200 Mꢁ1cmꢁ1). Fluorescence (MeOH, ca. 3.67 ꢃ 10ꢁ6 M) lex
8.26 (s,1H, H-4), 8.00 (d, J ¼ 8.4 Hz, 2H, C6H4), 7.27 (d, J ¼ 8.8 Hz, 2H,
360 nm, lem 453 nm,
37H31N2O8 631.2075, found: 631.2075.
F
¼ 0.60. HRMS (ESI-TOF) [M þ H]þ calcd for
C6H4), 6.34 (dd, J ¼ 8.1, 5.5 Hz, 1H, H-10), 5.27 (td, J ¼ 6.5, 2.1 Hz, 1H,
C
6