Gene Delivery: Honeycomb Phase of Lipid−DNA Complexes
A R T I C L E S
Synthesis. Chemicals were from Fisher Scientific and at least of
analytical grade unless otherwise indicated. They were used as received.
NR,Nδ-bis(tert-Butyl-carbamoyl)ornithine was prepared by a procedure
similar to that described in ref 60, which can be found in the Supporting
Information.
hydrotrifluoroacetate form) and n mmol DIEA in DMF was added to
the resulting solution with stirring. Stirring was continued at room
temperature for 2 h, and chloroform and water were added with vigorous
stirring after evaporation of most of the DMF.84 The phases were
separated, and after extracting two more times with chloroform, the
organic phases were combined and washed twice with 2 M HCl, twice
with 2 M NaOH, and once with water. After drying (Na2SO4), the
solvents were evaporated.
NR,Nδ-bis(2-Cyanoethyl)ornithine (5). To a solution of 474 mg
(11.9 mmol) NaOH in 6 mL of methanol, were added 1.00 g (5.93
mmol) of L-ornithine hydrochloride (Aldrich) and 15 mL of methanol.
The mixture was stirred at room temperature, 1.56 mL (1.26 g, 23.7
mmol) of acrylonitrile (Fluka) was added, and stirring was continued
for 2 h. The reaction mixture was acidified slightly by the addition of
concentrated hydrochloric acid (about 1.5 mL) and filtered immediately.
The residue was dried in vacuo to yield 1.4 g (5.66 mmol, 86%) of 5
hydrochloride as colorless microcrystals: Rf ) 0.73 (solvent mixture
A); 1H NMR (D2O): δ ) 1.65-2.25 (m, 4 H, CH2-CH2-CH), 2.85-
3.1 (m, 4 H), 3.1-3.25 (“t”, 2 H), 3.25-3.7 (“t”, 4 H) (CH2-N, CH2-
CN), 3.7-3.9 (“t”, 1 H, CH); 13C NMR (D2O): δ ) 15.2, 15.4 (CH2-
CN), 21.8, 26.9 (CH2-CH2-CH), 42.7, 43.1, 47.4 (CH2-N), 62.3
(CH), 118.1 (CN), 172.7 (CO2H).
Methyl (2S)-2,5-Di[(1S)-1,4-di(tert-butyl-carbamoyl-amino)butyl]-
carboxamidopentanoate (1). As described in the general procedure
for TBTU-mediated coupling (n ) 2), 14.6 g (44.0 mmol) of NR,Nδ-
bis(tert-Butyl-carbamoyl)ornithine was reacted with 4.38 g (20 mmol)
of ornithine methyl ester dihydrochloride (Bachem) to yield 14.1 g (18.2
mmol, 91%) of 1 as a colorless solid: Rf ) 0.52 (CHCl3/MeOH, 9:1,
1
1% AcOH); H NMR (CDCl3): δ ) 0.8-2.1 (m, C-CH2-C), 1.37
(s, C(CH3)3), 2.9-3.5 (2 m, 6 H, CH2-N), 3.65 (s, 3 H, OCH3), 4.1-
4.5 (2 m, 3 H, CH), 4.8-5.1 (bm, 2 H), 5.4-5.8 (2 b, 2 H), 7.22 (b,
1 H), 7.55 (b, 1 H) (all NH);13C NMR (CDCl3): δ ) 25.4, 25.8, 26.1
(CH2-CH2-CH2), 28.3, 28.4 (C(CH3)3), 30.0 (CH2-CH2-CH), 38.7,
39.6 (CH2-NH), 52.2 (OCH3), 52.1, 53.5, 53.9 (CH), 79.1, 80.0
(C(CH3)3),156.2 (O-C(O)-N), 172.1, 172.9, 173.2 (C-C(O)).
Methyl (2S)-2,5-Di[(1S)-1,4-diaminobutyl]carboxamidopentanoate
(8). About 70 mL of TFA (Acros) was saturated with nitrogen, cooled
on ice, and added to 10.0 g (12.9 mmol) of 1. The mixture was
evaporated after stirring for 1 h at room temperature, and diethyl ether
(300 mL) was added. The ether was decanted, and the solid product
was triturated with ether and finally dried in vacuo to yield 4.54 g
(12.1 mmol, 94%) of 8 (trifluoroacetate) as a colorless solid: 1H NMR
(MeOH-d4): δ ) 1.5-2.1 (m, 12 H, C-CH2-C), 2.9-3.1 (m, 4 H,
CH2-NH3+), 3.2-3.4 (m, 2 H, CH2-NH), 3.74 (s, 3 H, OCH3), 3.92
(“t”, 1 H), 4.04 (“t”, 1 H), 4.50 (“q”, 1 H) (CH);13C NMR (MeOH-d4):
δ ) 23.8, 24.1, 26.5, 29.5 (C-CH2-C), 40.0, 40.1 (CH2-NH), 53.0,
53.6, 53.9 (CH, OCH3), 169.9, 170.1, 173.6 (C(O)).
NR,Nδ-Bis(3-aminopropyl)ornithine (6). A mixture of 29.8 g (109
mmol) of 5, 175 mL of 1.4 m NaOH in 95% ethanol, and 6.7 g of a
supension of Raney-nickel (Aldrich) in water was prepared in a Parr
hydrogenator flask and agitated for 24 h at room temperature under 60
psi (4 bar) hydrogen pressure. The Raney-nickel was removed by
filtration over Celite (diatomaceous earth, acid washed; Sigma), and
the solvent was evaporated. The resulting oil was used for the next
step without further purification. Pure 6 hydrochloride for analytical
purposes was obtained by adding concentrated hydrochloric acid to
the reaction solution and collecting and drying the precipitate: 1H NMR
(D2O): δ ) 1.65-2.25 (2 m, 8 H, C-CH2-C), 3.0-3.35 (m, 10 H,
CH2-N), 4.12 (t, 3J ) 6.0 Hz, 1 H, CH); 13C NMR (D2O): δ ) 21.8,
24.1, 24.2, 26.2 (C-CH2-C), 37.0 (CH2-NH3+), 44.2, 45.0, 47.2
(CH2-NH2+), 59.9 (CH), 170.8 (CO2H).
NR,Nδ-Bis(tert-butyl-carbamoyl)-NR,Nδ-bis(3-[tert-butyl-carbam-
oyl-amino]propyl)ornithine (7). The raw 6 (assay calculated for 100%
yield from the previous step: 108 mmol) was dissolved in water/THF
(5:1, v/v). Over the course of 1 h, 100 mL of 4 M NaOH and a solution
of 104.2 g (477 mmol) of Boc2O (Novabiochem) in 200 mL of THF
were added in four portions with stirring while the reaction mixture
was kept at room temperature by cooling with a water bath. Stirring
was continued for 6 h, and most of the THF was then evaporated. After
addition of 600 mL of diethyl ether and 200 mL of water, the mixture
was acidified using half-concentrated hydrochloric acid. The phases
were separated, and the aqueous phase was extracted two more times
with 200 mL of ether. The combined organic phases were washed twice
with water, dried (Na2SO4), and evaporated. The residue was purified
in portions of 44 g by flash chromatography on 930 g of silica gel
using chloroform/methanol (19:1) as the eluent83 to yield 26.5 g (41
mmol, 38%) of 7 as a colorless solid: Rf ) 0.72 (9:1 CHCl3/MeOH);
1H NMR (CDCl3): δ ) 1.37, 1.38 (2s, CH3), 0.8-2.2 (ms, C-CH2-
C) (44 H), 2.7-3.9 (ms, 10 H, CH2-N), 4.26 (bm, 1 H, CH), 5.1-5.5
(b/m, 2 H, NH), 8.58 (b, 1 H, COOH); 13C NMR (CDCl3): δ ) 25.3,
27.5, 28.7, 29.8 (C-CH2-C), 28.4 (C(CH3)3), 37.4, 43.8, 44.4, 45.2
(CH2-N), 59.3 (CH), 79.0, 79.7, 80.8 (CCH3), 155.5, 156.1 (O-C(O)-
N), 174.9 (CO2H).
Methyl (2S)-2,5-Di((1S)-1,4-di[((1S)-1,4-di(tert-butyl-carbamoyl)-
(3-[tert-butyl-carbamoyl-amino]propyl)aminobutyl)carboxamido]-
butylcarboxamido)pentanoate (2). As described in the general
procedure for TBTU-mediated coupling (n ) 4), 5.83 g (9.01 mmol)
of 7 was reacted with 1.70 g (2.05 mmol) of 8 to yield 5.15 g (1.78
mmol, 87%) of 2 as a colorless solid: Rf ) 0.53 (CHCl3/MeOH 9:1,
1% concentrated NH4OH); 0.80 (CHCl3/MeOH 6:1, 1% concentrated
NH4OH); For characterization purposes, a small sample was deprotected
by adding cold TFA, stirring for 1 h and subsequent evaporation in
vacuo: 1H NMR (D2O): δ ) 1.2-2.0 (m, 44 H, C-CH2-C), 2.6-
3.2 (m, 52 H, CH2-N), 3.43 (s, 3 H, OCH3), 3.55-3.85, 3.90-4.15
(2 m, 7 H, CH), 7.2-7.7, 8.2-8.5 (m, amide-H); 13C NMR (D2O): δ
) 21.2 (2), 21.4 (2), 23.9 (4), 24.0 (4), 24.6, 24.8 (2), 27.1 (4), 28.0,
28.7 (2) (C-CH2-C), 36.7 (8) (CH2NH3+), 39.0, 39.4 (2), 43.8 (4),
44.8 (4), 47.0 (4) (CH2-N), 52.9, 53.1, 54.0, 54.4, 60.0 (2), 60.4(2)
(CH, OCH3), 116.3 (q, J ) 291 Hz, CF3), 162.4 (q, J ) 36 Hz,
CF3C(O)), 167.8 (2), 167.6 (2), 172.9, 173.2, 173.9 (C(O)).
N1-(2-Aminoethyl)-(2S)-2,5-di((1S)-1,4-di[((1S)-1,4-di(tert-butyl-
carbamoyl)(3-[tert-butyl-carbamoyl-amino]propyl)aminobutyl)car-
boxamido]butylcarboxamido)pentanamide (3). To a solution of 2.00
g (0.69 mmol) of 2 in methanol, was added 927 µL (830 mg, 13.8
mmol) of ethylenediamine in one portion, and the mixture was stirred
at room temperature for 10 days. The solvent was evaporated, and water
and chloroform were added. After agitation, the phases were separated,
and the organic layer was washed two more times with water, dried
(Na2SO4), and evaporated. The residue was purified by flash chroma-
tography on 120 g of silica gel using chloroform/methanol (15:1,
changed to 6:1 once the product started to elute) as the eluent to yield
1.33 g (0.45 mmol, 66%) of 3 as a colorless solid: Rf ) 0.61 (CHCl3/
MeOH 6:1, 1% concentrated NH4OH); 1H NMR (CDCl3, trace MeOH-
General Procedure for TBTU-Mediated Coupling (Amine Com-
pound with n Amino Groups). To a mixture of 1.1n mmol acid
component, 1.1n mmol O-benzotriazol-1-yl-N,N,N′,N′-tetramethyluro-
nium tetrafluoroborate (TBTU; Bachem), and 1.1n mmol 1-hydroxy-
benzotriazole (HOBt) hydrate (Peptides International) in dimethylfor-
mamide (DMF) (peptide synthesis grade, Applied Biosystems), was
added 2n mmol N,N-diisopropylethylamine (DIEA; Aldrich). After 10
min, a mixture of 1 mmol amine compound (hydrochloride or
(83) This compound elutes faster than estimated by thin-layer chromatography,
probably because its retention factor increases with its concentration.
(84) Due to the sensitivity of the methyl ester to hydrolysis, immediate workup
of the reaction mixture is mandatory after the addition of water.
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J. AM. CHEM. SOC. VOL. 128, NO. 12, 2006 4005