Journal of the American Chemical Society
Article
because of the coexistence of two conformers of LA
the large sizes of metallo-supramolecular isomers, we first
calculated the binding energy of each binding mode in order to
simplify the DFT calculation. Then, the total binding energy of
each isomer was estimated as the sum of individual binding
energies of six binding units within one structure. As shown in
Table S1, isomer A1 (EA1 = −787.253 623 2 Hartree) exhibited
the highest binding energy, followed by A4 (EA4
=
−787.247 005 8 Hartree), A3 (EA3 = −787.243 697 1 Hartree),
and A2 (EA4 = −787.240 279 8 Hartree). The order of total
binding energies (A1 > A4 > A3 > A2) of four isomers is
consistent with the order of experimental distribution of each
isomer collected by STM imaging (Figure 3L), suggesting that
the most abundant isomer A1 could be the most stable one with
the highest binding energy.
Synthesis and Self-Assembly of Complexes B with
One Binding Mode Followed by NMR and Mass
Spectrometry Characterization. During the self-assembly
of complexes A, four types of binding modes corresponding to
two conformations of LA coexisted and resulted in four
hexameric isomers. To further control the self-assembly of the
dissymmetrical building block, another compact ligand LB was
designed by shortening the linker between two layers and the
length of two arms. Through such a design, we aimed to control
the self-assembly of LB with one conformation by introducing
steric hindrance, which could result in one binding mode as
shown in Scheme 2B. Briefly, LB was obtained by the
combination of Sonogashira and Suzuki coupling reactions. It
was purified through a similar procedure as LA. Precursors and
LB were fully characterized by 1H, 13C, 2D COSY, 2D NOESY,
ESI−MS, and MALDI-TOF mass spectrometry.
Figure 4. (A) ESI−MS and (B) 2D ESI-TWIM−MS plot (m/z vs drift
time) of complexes B or Zn2xLBx (x = 6, 7, 8). The charge states of the
intact assemblies are marked.
The supramolecules were successfully prepared via the same
self-assembly procedure as for complexes A. The formation of
supramolecules was first characterized by 1H NMR, 2D COSY,
spectrum of assemblies shows four sets of tpy signals (Figure
S148). Similar characteristic upfield shifts of tpy-H6,6″ (Δδ ≈
0.98 ppm) and downfield shifts of tpy-H3′,5′ (Δδ ≈ 0.4 ppm)
were observed, indicating the coordination with Zn(II). The
−OCH2− of three alkyl chains (−OC6H13) showed peaks at
4.38, 4.34, and 4.25 ppm, which correspond to alkyl-Hd, alkyl-
Hd′, and alkyl-Hd″, with an integration ratio 1:1:1. DOSY NMR
spectroscopy (Figure S146) showed a broad diffusion coefficient
(log D = −9.69 to −9.74) for all the relevant peaks, suggesting
the existence of a mixture. As such, the supramolecular assembly
of LB could differ from the result of LA, due to the different
assembly behavior.
In ESI−MS and TWIM−MS spectra, three dominant
complexes (hexagon, heptagon, and octagon) were detected in
the system (Scheme 2), indicating that the compact structure of
LB indeed altered the self-assembly process. Briefly, the ESI−
MS spectrum showed three dominant sets of peaks with
continuous charge states from 10+ to 22+ (Figure 4A). The
isotope patterns of these peaks matched well with the
corresponding simulated isotope patterns of hexamer Zn12LB6
(B1), heptamer Zn14LB7 (B2), and octamer Zn16LB8 (B3) with
molecular weights of 14 631.06 Da, 17 069.57, and 19 505.08 Da
difference of the hexamer, heptamer, and octamer, different
charge states of the hexagon, heptagon, and octagon with a
narrow time distribution were distinguished by TWIM−MS
(Figure 4B). Given that four isomers were identified during the
assembly between Zn(II) and LA, the characterization of
detailed structures for complexes B using STM turned out to be
necessary.
Characterization of Complexes B by STM. From the
STM images, hexamer, heptamer, and octamer were detected
account of the closer distance, the signals from two adjacent
⟨tpy-Zn(II)-tpy⟩ units have further merged into a circular lobe.
The sizes of supramolecules measured by STM agreed well with
the simulated structural sizes (Figure 5C,F,I). As shown by the
distribution of three isomers imaged by STM (Figure S165),
heptamer B2 is the foremost product (63.2%), followed by the
octamer (28%) and hexamer (8.8%). The highest population of
the heptamer further indicated the existence of substantial steric
hindrance in the cyclic structures and expanded the angles
between ligand arms to form larger rings. Interestingly, in
comparison with the four binding modes during the self-
assembly of LA with two major conformations, only one type of
conformation corresponding to a single type of binding mode
was found for the self-assembly of LB, which can be validated by
the uniform distribution in the STM image (Figure 5). The
average distribution of bright spots in Figure 5 indicated that the
short and long arms of the inner and outer layers are staggered in
the self-assembly process on account of the bulky size of ⟨tpy-
Zn(II)-tpy⟩ junctions and steric hindrance between them. STM
images also indicated that only spiral structures were generated
in the Zn2xLBx (x = 6, 7, 8) system. Therefore, by shortening the
linkers between two layers and length of arms to introduce steric
hindrance, the self-assembly behavior and conformations of
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J. Am. Chem. Soc. 2021, 143, 1224−1234