Molecules 2020, 25, 704
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Yield: 35%. Rf: 0.55. H NMR (500 MHz, CDCl3) δ 7.76–7.75 (d, J = 1.9, 1H, H6 Ar), 7.34 (dd, J = 15.7,
8.6, 4H, Ar-H tosyl), 7.27–7.17 (m, 5H, Ar), 6.19–5.20 (td, J = 7.8, 2.9, 1H, H-1′), 4.45–3.74 (m, 10H),
2.72–2.61 (m, 1H, CH-ala), 2.46 (s, 3H, CH3, tosyl), 1.85 (s, 3H, CH3, thy), 1.39 (t, J = 7.2 Hz, 3H, CH3,
13
ethyl), 1.31 (m, 3H, CH3-ala). C NMR (126 MHz, CDCl3) δ 173.65, 173.59 (C-ala), 163.52 (C1-thy),
150.58, 150.53 (C3-thy), 150.25, 150.19 (C1-tosyl), 145.99, 145.98 (C1-phenyl), 135.04, 134.95 (CH-thy),
133.05, 132.90 (C4-tosyl), 130.27, 130.21 (CH, C2, C6-tosyl), 129.75, 129.70 (CH, C2, C6-phenyl), 127.64,
127.58 (CH, C4-phenyl), 125.10, 120.35 (CH, C3, C5-phenyl), 120.31, 120.21 (CH, C3, C5-tosyl), 111.15,
110.98 (C3-thy), 84.22, 83.99 (CH, C1′), 80.96, 80.90 (CH, C3′), 80.72, 80.66 (CH, C4′), 63.89, 63.85 (CH2,
C5′), 63.33, 63.29 (CH2, ethyl), 50.39, 50.38 (CH, ala), 39.03 (CH2, C3′), 21.69, 21.00 (CH3-ethyl), 20.96,
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20.95 (CH3-tosyl), 14.12 (CH3, ala), 12.49, 12.44 (CH3-thy). P NMR (202 MHz, CDCl3) δ 2.78, 2.66. MS
+
+
+
(ESI) : 652.2 [M + H ]; 674.1 [M + Na ]. HPLC: Rt: 16.03 min; Purity > 98%; [Gradient: (0′) 95% H2O/5%
CH3CN − (5′) 50% H2O/50% CH3CN − (15′) 50% H2O/50% CH3CN − (20′) 95% H2O/5% CH3CN].
Synthesis of (S)-ethyl-2-(((((2R,3R,5R)-5-(5-methyl-2,4-dioxo-3,4-dihydropyrimidin-1(2H)-yl)-3-(((4-
nitrophenyl)sulfonyl)oxy)tetrahydrofuran-2yl)methoxy)(phenoxy)phosphoryl)amino)propanoate (6). MF:
C27H31N4O13PS; MW: 682.5. The ProTide 14 (1 eq; 1.16 g; 2.34 mmol) was dissolved in pyridine (20
mL) at 0 °C. 4-nitrobenzenesulfonylchloride (nosyl chloride) (2 eq; 1.06 g; 4.79 mmol) and silver
trifluoromethanesulfonate (AgOTf) (2 eq; 1.23 g; 4.79 mmol) were added and the reaction mixture
was stirred at 0 °C. After 1h the reaction mixture was allowed to slowly warm to rt and stirred for
another 2 h. The reaction mixture was then diluted with EtOAc, filtered, and the filtrate was washed
with H2O and brine. The organic layer was dried over anhydrous Na2SO4 and the solvent was
evaporated under reduced pressure. Purification of the crude residue was accomplished by silica gel
column chromatography (95% CH2Cl2/5% CH3OH) to give the desired compound 6 as a yellowish
1
solid. Yield: 60%. Rf: 0.6. H NMR (500 MHz, CDCl3) δ 8.77–8.67 (s, 1H, NH, thy), 8.41–8.39 (d, J = 2.2,
2H-Ar, nosyl), 8.14–8.08 (m, 2H-Ar, nosyl), 7.71 (ddd, J = 7.6, 4.7, 1.7, 1H, H6), 7.42–7.30 (m, 5H-Ar),
6.28–5.28 (m, 1H-H-1′), 4.51–3.75 (m, 7H), 2.79–2.46 (m, 1H, CH-ala), 1.96–1.86 (m, 2H, H-2′, H-2′’),
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1.37 (t, J = 7.6, 3H, CH3 ester), 1.31–1.25 (m, 6H, CH3-thy, CH3-ala). C NMR (126 MHz, CDCl3) δ
173.66, 173.36 (C-ala), 163.48 (C2, thy), 151.13, 151.10 (C1, thy), 150.29, 150.25 (C1, nosyl), 141.45,
141.35 (C1, phenyl), 134.73, 134.67 (CH, thy), 129.86, 129.81 (CH, C2-6, nosyl), 129.15, 129.13 (CH, C2,
C6, phenyl), 125.28 (CH, C4, phenyl), 124.84, 124.77 (CH, C3, C5, phenyl), 120.15, 120.11 (CH, C3, C5,
nosyl), 120.06, 120.02, 111.36, 111.23 (C, C3, thy), 84.14, 84.00 (CH, C1′), 80.58, 80.52 (CH, C3′), 80.25,
80.18 (CH, C4′), 63.17, 63.14 (CH2, C5′), 62.82, 62.79 (CH2, ethyl), 50.41, 50.20 (CH, ala), 39.18, 39.16
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(CH2, C2′), 20.94, 20.90 (CH3, ethyl), 14.12, 14.11 (CH3, ala), 12.58, 12.56 (CH3, thy). P NMR (202 MHz,
+
+
CDCl3) δ 2.75, 2.48. MS (ESI) : 705.1 [M + Na ]. HPLC: Rt: 15.88 min; Purity > 99%; [Gradient: (0′) 95%
H2O/5% CH3CN − (5′) 50% H2O/50% CH3CN − (15′) 50% H2O/50% CH3CN − (20′) 95% H2O/5%
CH3CN].
Synthesis
of
tert-butyl-3-((2R,4R,5R)-5-(((((tert-butoxycarbonyl)((S)-1-ethoxy-1-oxopropan-2-
yl)amino)(phenoxy)phosphoryl)oxy)methyl)-4-(((4-nitrophenyl)sulfonyl)oxy)tetrahydrofuran-2-yl)-5-methyl-
2,6-dioxo-3,6-dihydropyrimidine-1(2H)-carboxylate (7). MF: C37H47N4O17PS. MW: 882.83. The nosylated
ProTide (6) (1 eq, 0.050 g, 0.073 mmol) was dissolved in pyridine (6 mL) at rt under nitrogen
atmosphere. To the stirring solution, di(tert-butyl)dicarbonate (Boc2O) (1.3 eq, 0.021 mL, 0.020 g, 0.095
mmol) was added dropwise and the reaction was stirred for 16h. The crude mixture was evaporated
under reduced pressure and was purified by silica gel column chromatography (CH2Cl2/CH3OH
gradient from 100% CH2Cl2 to 95% CH2Cl2) to give the final di-protected nosylated derivate 7 as a
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yellowish oil. Yield: 56%. Rf: 0.67 in 90% CH2Cl2/10% CH3OH as TLC system. H NMR (500 MHz,
CDCl3) δ 8.47–8.36 (d, 2H, J = 2.2, Ar, nosyl), 8.17–8.08 (m, 2H, Ar, nosyl), 7.38 (m, 1H, Ar), 7.32–7.24
(m, 4H), 7.17 (s, 1H, thy), 6.31–6.24 (m, 1H-H-1′), 4.51–3.75 (m, 7H), 2.78–2.43 (m, 1H, CH-Ala), 2.31–
2.23 (m, 1H-H-2′), 2.01 (m, 3H, CH3, thy), 1.53–1.49 (m, 9H, CH3, tert-butyl), 1.44 (m, 9H, CH3, tert-
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butyl), 1.38 (t, J = 7.6, 3H, CH3, ester), 1.31 (m, 3H, CH3, ala). C NMR (126 MHz, CDCl3) δ 175.50,
174.29 (C, ala), 161.32 (C2, thy), 150.13, 150.08 (C1, thy), 150.02, 150.00 (C1, nosyl) 143.51, 142.21 (C1,
phenyl), 132.71, 132.23 (CH, thy), 130.68, 129.99 (CH, C2–C6, nosyl), 129.34, 129.5 (CH, C2, C6,
phenyl), 126.28 (CH, C4, phenyl), 125.79, 124.85 (CH, C3, C5, phenyl), 120.15, 120.13 (CH, C3,C5,
nosyl), 120.06, 120.02, 111.36, 111.23 (C, C3, thy), 84.13, 84.10 (CH, C1′), 80.78–80.77 (C-tert-butyl),