time points, samples were analyzed by CD. Samples were also
To a flame dried Schlenk flask, heptylamine (14.5 mL, 0.0980
mmol) and DMF (8 mL) were combined under Ar. In a separate
vial, PLG–NCA (1.552, 7.35 mmol) was dissolved in dime-
thylformamide (DMF) (8 mL) and added to the reaction flask.
The reaction mixture was stirred for three days at room
temperature. The polymer was precipitated into diethyl ether and
ꢁ
1
freeze dried, reconcentrated in D O to 2.5 mg mL for homo-
2
ꢁ1
polymers and 3.75 mg mL for diblock copolymers, acidified
1
with trifluoroacetic acid to stop hydrolysis, and analyzed by H-
NMR.
Ribogreen assays (QuantiT Ribogreen RNA Quantification
Reagent, Invitrogen) were performed to determine the
complexation efficiency of the polymers with siRNA. Ribogreen
is a cyanine dye that is nearly non-fluorescent when unbound to
RNA, but exhibits a >1000 fold enhancement in fluorescence
when bound to RNA. When siRNA is complexed (e.g. by
a polymer), it is unavailable to bind to Ribogreen and thus the
1
removed by centrifugation (0.823 g, 67.0% recovered, by H-
1
NMR n ¼ 75, by DMF GPC M
NMR (400 MHz, [D
w
¼ 14 100, PDI ¼ 1.09). H-
6
] DMF) d ¼ 2.28 (br m, 2H, CH
2
), 2.55 (br
m, 2H, CH–CO), 3.38 (br m, 1H, C^CH), 4.09 (br m, 1H, CH),
1
4.76 (br m, 2H, CH CO), 8.5 (br m, 1H, NH). COSY H-NMR
2
shown in the ESI†.
4
4
fluorescence signal decreases relative to uncomplexed siRNA.
ꢁ
1
2
5 mL of siRNA at 0.006 mg mL was aliquoted into wells of
Synthesis of poly(ethylene glycol)-b-poly(g-propargyl L-gluta-
mate). A typical procedure for the polymerization is as follows. A
round bottom flask was rinsed with acetone and oven dried. In
a 96 well plate and the appropriate amount of polymer was
added to attain the desired polymer : siRNA ratio (N/P) in
a total volume of 50 mL. After allowing 10 minutes for
complexation, 20 mL of the complex solution was added to
a black, flat-bottomed, polypropylene 96-well plate containing
2
a glove box, PEG–NH (0.900 g, 0.180 mmol) was dissolved in
DMF (9 mL) in a round bottom flask. PLG–NCA (0.950 g, 4.50
mmol) was dissolved in dry DMF (9 mL) added to the reaction
flask. The reaction mixture was stirred for three days at room
temperature. The reaction solution was rotovaped and dried
under high vacuum to remove the DMF. To remove any residual
PLG–NCA and DMF, the polymer was redissolved in
dichloromethane precipitated into diethyl ether and removed by
1
00 mL of Ribogreen (diluted 1 : 200 in water per manufacturer
instructions). The fluorescence of each well was measured on
a Perkin Elmer Plate 1420 Multilabel plate reader and the frac-
tion of uncomplexed siRNA was determined by comparing the
fluorescence of the polymer complexes with the fluorescence of
a free siRNA control. For the heparin destabilization titrations,
1
centrifugation (1.45 g, 87.9% recovered, by H-NMR n ¼ 23, by
ꢁ1
1
heparin (167 IU mg ) was dissolved in a stock solution at 0.5 IU
GPC PDI ¼ 1.09). H-NMR (400 MHz, [D
6
] DMF) d ¼ 2.28
ꢁ1
mL and added to polyplex/ribogreen solutions.
(dm, 2H, CH
2
PPLG), 2.55 (dm, 2H, CH–CO PPLG), 3.38 (m,
CH PEG), 4.09 (m, 1H,
CO PPLG), 8.5 (m, 1H, NH
1
H, C^CH PPLG), 3.59 (s, 4H, CH
2
2
Synthesis of g-propargyl L-glutamate hydrochloride. L-Gluta-
CH PPLG), 4.76 (m, 2H, CH
PPLG).
2
mic acid (15 g, 102 mmol) was suspended in propargyl alcohol
(
550 mL) under argon. Chlorotrimethylsilane (28.5 mL, 224
mmol) was added dropwise to the suspension over 1 hour. The
resulting solution was stirred at room temperature for two days
until there was no undissolved L-glutamic acid. The reaction
solution was precipitated into diethyl ether giving a white solid.
The crude product was removed by filtration, dissolved in boiling
isopropanol, and precipitated into diethyl ether. The product was
Synthesis of 2-bromo-N-methylethanamine hydrobromide. 2-
Bromo-N-methylethanamine hydrobromide was synthesized
45
following the protocol presented by Schutte et al. Briefly, in
a round bottom flask, 48% w/w HBr (30 mL) was cooled in an ice
ꢀ
bath to 4 C and 2-(methylamino)ethanol (10 mL, 125 mmol)
was added dropwise. H
2
O and HBr were distilled off and the
ꢀ
filtered, washed with diethyl ether, and dried under vacuum to
1
yield 19.13 g (84.5%). H-NMR (400 MHz, D
crude product solution was cooled to 60 C. The solution was
slowly added to a solution of cold acetone, where it precipitated
out to form a white solid. The precipitant was removed, washed
2
O) d ¼ 2.20 (m,
2
H, CH
2
), 2.63 (dt, 2H, CH–CO), 2.86 (t, 1H, C^CH), 4.05 (t,
CO).
1
H, CH), 4.69 (d, 2H, CH
2
with cold acetone, and dried under high vacuum (16.46 g, 60.4%
1
yield). H-NMR d (400 MHz, D
2
O) 3.69 (t, 2H, BrCH
2
), 3.50 (t,
Synthesis of N-carboxyanhydride of g-propargyl L-glutamate
PLG–NCA). g-Propargyl L-glutamate hydrochloride (6 g, 27
2 3
2H, CH N), 2.75 (s, 3H, CH ).
(
mmol) was suspended in dry ethyl acetate (190 mL). The solution
was heated to reflux and triphosgene (2.67 g, 9 mmol) was added.
The reaction solution was refluxed for 6 hours under nitrogen. The
reaction solution was cooled to room temperature and any
unreacted g-propargyl L-glutamate hydrochloride was removed
General synthesis of amino azides. Organic azides can be
EXPLOSIVE! A guide to safe handling and storage of organic
azides can be found in ‘‘Click Chemistry: Diverse chemical function
12
from a few good reactions’’ by Kolb et al. The shorthand nota-
tion for each side group used in this article is provided in
parentheses after the specific chemical name. Amino azides were
ꢀ
by filtration. The reaction solution was then cooled to 5 C and
46
washed with 190 mL of water, 190 mL of saturated sodium
ꢀ
synthesized using the protocol presented by Carboni et al.
A
bicarbonate, and 190 mL of brine all at 5 C. The solution was then
representative example, 3-dimethylamino-1-propylchloride
hydrochloride (10 g, 63 mmol) and sodium azide (8.22 g, 126
dried with magnesium sulfate, filtered, and concentrated down to
1
viscous oil (4.53 g, 79.2% yield). H-NMR (400 MHz, CDCl
ꢁ1
3
) d ¼
mmol) were dissolved in water (1 mL mmol ) and heated at 75
ꢀ
2
4
.20 (dm, 2H, CH ), 2.49 (t, 1H, C^CH), 2.58 (t, 2H, CH–CO),
2
C for 15 h. The reaction mixture was cooled in an ice bath and
.39 (t, 1H, CH), 4.68 (d, 2H, CH CO), 6.5 (s, 1H, NH).
2
NaOH (4 g) was added. The solution phase separated and the
organic phase was removed. The aqueous phase was extracted
with diethyl ether twice. The organic layers were combined, dried
Synthesis of poly(g-propargyl L-glutamate) initiated by heptyl-
amine. A typical procedure for the polymerization is as follows.
with MgSO
4
, and concentrated down to an oil (6.60 g, 80.8%
This journal is ª The Royal Society of Chemistry 2011
Soft Matter, 2011, 7, 5627–5637 | 5629