1974
L. NGIWSARA et al.
enzymes,24) the sequence motif DAxxH (corresponding
Asp223-Tyr227 of HBG-III as shown in Fig. 1) is often
found in subfamilies 1, 2, 5, 15, 17, 19, 24, 27, 28, 31,
4) Takewaki S, Chiba S, Kimura A, Matsui H, and Koike Y, Agric.
Biol. Chem., 44, 731–740 (1980).
5
)
Nishimoto M, Kubota M, Tsuji M, Mori H, Kimura A, Matsui
H, and Chiba S, Biosci. Biotechnol. Biochem., 65, 1610–1616
3
2, and 36, which include ꢀ-1,4-linkage-specific en-
(
2001).
zymes such as ꢀ-amylases, cyclomaltodextrin glucano-
transferases, and ꢀ-glucosidases. Most ꢀ-amylases and
cyclomaltodextrin glucanotransferases have dipeptide
Lys-His at the C-terminal end of the motif. The
corresponding His210 of Taka-amylase makes a hydro-
gen bond with 2OH of the 6-deoxyglucose moiety of an
acarbose derivative at subsite þ1 in a complex struc-
ture.2 The equivalent His180 of Bacillus subtilis ꢀ-
amylase is also involved in the hydrogen bond at the
same position.2 Our biochemical data clearly indicate
the involvement of the corresponding His227 of HBG-II
in the binding of maltooligosaccharides. The preference
of HBG-II for maltooligosaccharides is most likely due
to the hydrogen-bond formation of His227 with a
glucose residue of maltooligosaccharides at subsite þ1.
We found that the Tyr residue situated at position 227
in HBG-III is involved in sucrose preference with drastic
increases in both kcat and Km. The sequence motif
DAxxY/F (corresponding to Asp223-Tyr227 of HBG-
III) frequently occurs in GH-13 enzymes belonging to
subfamilies 4 (sucrose hydrolases), 16 (trehalose syn-
thases), 17 (ꢀ-glucosidases), 18 (sucrose phosphory-
lases), and 23 (ꢀ-glucosidases). The protein structures of
Tyr-harboring enzymes, sucrose hydrolase derived from
6
)
Kubota M, Tsuji M, Nishimoto M, Wongchawalit J, Okuyama
M, Mori H, Matsui H, Surarit R, Svasti J, Kimura A, and Chiba
S, Biosci. Biotechnol. Biochem., 68, 2346–2352 (2004).
Kimura A, Takewaki S, Matsui H, Kubota M, and Chiba S,
J. Biochem., 107, 762–768 (1990).
7)
8)
9)
Kimura A, Yoshida-Kitahara F, and Chiba S, Agric. Biol.
Chem., 51, 1859–1864 (1987).
Takewaki S, Kimura A, Kubota M, and Chiba S, Biosci.
Biotechnol. Biochem., 57, 1508–1513 (1993).
5)
10) Wongchawalit J, Yamamoto T, Nakai H, Kim YM, Sato N,
Nishimoto M, Okuyama M, Mori H, Saji O, Chanchao C,
Wongsiri S, Surarit R, Svasti J, Chiba S, and Kimura A, Biosci.
Biotechnol. Biochem., 70, 2889–2898 (2006).
6)
1
1) Ohashi K, Sawata M, Takeuchi H, Natori S, and Kubo T,
Biochem. Biophys. Res. Commun., 221, 380–385 (1996).
1
2) Nishimoto M, Mori H, Moteki T, Takamura Y, Iwai G,
Miyaguchi Y, Okuyama M, Wongchawalit J, Surarit R, Svasti J,
Kimura A, and Chiba S, Biosci. Biotechnol. Biochem., 71,
1
3) Svensson B, Plant Mol. Biol., 25, 141–157 (1994).
4) MacGregor EA, Jane cˇ ek S, and Svensson B, Biochim. Biophys.
Acta, 1546, 1–20 (2001).
703–1716 (2007).
1
1
ˇ
1
5) Inohara-Ochiai M, Nakayama T, Goto R, Nakao M, Ueda T, and
Shibano Y, J. Biol. Chem., 272, 1601–1607 (1997).
16) Yamamoto K, Nakayama A, Yamamoto Y, and Tabata S, Eur.
J. Biochem., 271, 3414–3420 (2004).
1
7) Saburi W, Mori H, Saito S, Okuyama M, and Kimura A,
Biochim. Biophys. Acta, 1764, 688–698 (2006).
2
7)
Xanthomonas campestris and sucrose phosphorylase
2
8)
18) Tsujimoto Y, Tanaka H, Takemura R, Yokogawa T, Shimonaka
A, Matsui H, Kashiwabara S, Watanabe K, and Suzuki Y,
J. Biochem., 142, 87–93 (2007).
from Bifidobacterium adolescentis, indicate that the
side chain of Tyr has no direct contact with a fructose
moiety of sucrose. It is accommodated on the far side of
1
9) Lin-Cereghino J, Wong WW, Xiong S, Giang W, Luong LT, Vu
J, Johnson SD, and Lin-Cereghino GP, BioTechniques, 38, 44–
48 (2005).
2
7)
the pocket from the equivalent residues, as observed
for the isomaltotriose-binding mode of dextran glucosi-
dase.29) In contrast, maltooligosaccharides are expected
20) Laemmli UK, Nature, 227, 680–685 (1970).
21) Sugiura M and Hirano K, Clin. Chim. Acta, 75, 387–391 (1977).
to bind closely to the residue.27,30) Introduction of the
2
2) Kobayashi M, Hondoh H, Mori H, Saburi W, Okuyama M, and
Kimura A, Biosci. Biotechnol. Biochem., 75, 1557–1563 (2011).
3) Chiba S, Asada-Komatsu Y, Kimura A, and Kawashima K,
Agric. Biol. Chem., 48, 1173–1178 (1984).
bulky Tyr residue at this position probably causes steric
hindrance in the binding of substrates, and substrate-
binding in a distorted manner might increase the energy
state of the Michaelis complex, resulting in increases in
Km and kcat.
2
24) Stam MR, Danchin EG, Rancurel C, Coutinho PM, and
Henrissat B, Protein Eng. Des. Sel., 19, 555–562 (2006).
2
2
2
5) Brzozowski AM and Davies GJ, Biochemistry, 36, 10837–
0845 (1997).
1
Acknowledgment
6) Fujimoto Z, Takase K, Doui N, Momma M, Matsumoto T, and
Mizuno H, J. Mol. Biol., 277, 393–407 (1998).
7) Kim MI, Kim HS, Jung J, and Rhee S, J. Mol. Biol., 380, 636–
647 (2008).
We thank Mr. Tomohiro Hirose of Instrumental
Analysis Division, the Equipment Management Center,
Creative Research Institution, Hokkaido University for
amino acid analysis.
28) Mirza O, Skov LK, Sprogoe D, van den Broek LA, Beldman G,
Kastrup JS, and Gajhede M, J. Biol. Chem., 281, 35576–35584
(2006).
9) Hondoh H, Saburi W, Mori H, Okuyama M, Nakada T,
Matsuura Y, and Kimura A, J. Mol. Biol., 378, 913–922 (2008).
2
References
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Chiba S, ‘‘Handbook of Amylases and Related Enzymes,’’ ed.
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