A new 48-membered macrolide, quadoctomycin
R Sawa et al
5
Table 2 Antimicrobial activities of quadoctomycin and monazomycin A
MIC (μg ml−1)
Test organisms
Quadoctomycin Monazomycin A
Test organisms
Quadoctomycin Monazomycin A
Staphylococcus aureus FDA 209P
Staphylococcus aureus Smith
1
2
2
4
4
4
4
4
8
1
1
1
4
4
4
2
8
4
8
4
Enterococcus
Enterococcus
Enterococcus
Escherichia
Escherichia
Escherichia
Escherichia
Escherichia
Escherichia
Shigella
faecium
faecium
faecium
coli
JCM 5804
NCTC12202
NCTC12204
NIHJ
2
2
4
8
1
Staphylococcus aureus MS9610
Staphylococcus aureus MRSA No.5
Staphylococcus aureus MRSA No.17
Staphylococcus aureus MS16526(MRSA)
Staphylococcus aureus TY-04282(MRSA)
Staphylococcus aureus Mu50
2
2
4
2
464
128
464
464
64
464
4128
464
32
2
coli
K-12
1
coli
K-12 ML1629
BEM11
2
coli
2
coli
BE1121
32
Micrococcus
Micrococcus
Micrococcus
Bacillus
luteus
luteus
luteus
FDA 16
0.5
0.5
0.5
2
coli
BE1186
64
32
IFO 3333
PCI 1001
dysenteriae JS11910
464
464
464
464
464
464
464
464
2
464
464
464
464
464
464
464
464
2
Salmonella
Proteus
enteritidis
vulgaris
1891
subtilis NRRL B-558
subtilis PCI 219
OX19
Bacillus
2
Proteus
mirabilis
IFM OM-9
Bacillus
subtilis ATCC23857 (168)
cereus ATCC 10702
2
Serratia
marcescens B-0524
aeruginosa A3
pneumoniae PCI 602
Bacillus
1
Pseudomonas
Klebsiella
Corynebacterium bovis
1810
2
Enterococcus
Enterococcus
Enterococcus
faecalis JCM 5803
faecalis NCTC12201
faecalis NCTC12203
1
Candida
albicans
3147
2
Mycobacterium smegmatis
ATCC607*
2
Agar dilution streak method (twofold dilution).
Medium & Culture condition: Mueller-Hinton agar (Difco) 37 °C 18 h., *37 °C 42 h. “DYNATEC”.
recorded with a FT/IR-4100 Fourier-transform infrared spectrometer (JASCO). into 14 K-1 flasks containing solid medium. The culture was incubated
1H and 13C NMR spectra, including 2D NMR, were measured with an statically at 30 °C for 14 days. The whole fermentation culture (560 g) was
ECZ600R spectrometer (JEOL Resonance, Tokyo, Japan) and an AVANCE III extracted with acetone (560 ml, twice) and the acetone extract obtained by
500 spectrometer (Bruker, Billerica, MA, USA) using solvent signals as an filtration. The solvent was concentrated in vacuo; water (300 ml) was added and
internal reference. Mass spectra were recorded using a LTQ Orbitrap XL mass extracted with an equivalent volume of n-BuOH. The organic layer was
spectrometer (Thermo Fisher Scientific, San Jose, CA, USA). The novelty of evaporated and partitioned by n-hexane/MeOH (10 ml each). The MeOH layer
quadoctomycin was searched using the Dictionary of Natural Products on DVD was concentrated to dryness to obtain a brown solid (1 g). The residue was
databases (Chapman & Hall/CRC Press, Boca Raton, FL, USA) and SciFinder suspended in a small amount of chloroform/MeOH (1:1) and applied to a silica
(Chemical Abstracts Service, Columbus, OH, USA). Standard methyl-α-D-
gel column (50 g, Silica gel 60 Art 1.07734; Merck KGaA, Darmstadt, Germany)
mannoside was purchased from Sigma Aldrich, St Louis, MO, USA. Mon- and washed with chloroform/MeOH/H O (v/v 3:1:0.15) and eluted with
2
azomycin A was obtained from our inhouse library.
chloroform/MeOH/H O (v/v 10:5:1) to give 339 mg of light-brown solid.
2
The solid containing the quadoctomycin was further purified by HPLC (600E
Taxonomic studies of the producing strain MM168-141F8
System, Waters, Milford, MA, USA) using an ODS column (Shiseido, Capcell
Morphological properties were observed following incubation at 30°C for Pak UG120, 30 mm id× 250 mm; Tokyo, Japan) developed with 35%
1 days on yeast extract-malt extract agar (ISP medium No. 2), oatmeal agar acetonitrile aqueous solution containing 0.01% trifluoroacetic acid to give 55
2
28
(
ISP medium No. 3) and inorganic salt starch agar (ISP medium No. 4). mg of quadoctomycin: white powder; [α]D +15° (c 0.5, MeOH); IR νmax
−
1
Detailed observation of mycelial morphology was performed using a scanning (KBr) cm 3406, 2965, 2934, 1780, 1677, 1458, 1434, 1385, 1092, 1070, 1049,
1
13
electron microscope (SU-1510, Hitachi High-Technologies) after strain 974; UV λmax (MeOH) end absorption; H NMR (pyridine-d5, 600 MHz),
C
MM168-141F8 was incubated on ISP medium No. 3 at 30 °C for 8 days. NMR (pyridine-d5, 150 MHz) data are given in Table 1; HRESI/MS [M+H]+
The type of diaminopimelic acid isomers in whole-cell hydrolysates was
determined by the method of Staneck and Roberts.12 The total DNA of
m/z 1436.9961 (calcd. for C76H142NO23, 1436.9967).
MM168-141F8 was prepared using a Genomic DNA Extraction Kit Mini (RBC Methanolysis of quadoctomycin
Bioscience Co., New Taipei, Taiwan) according to the manufacturer’s instruc- Quadoctomycin (40 mg) was dissolved in 3 M hydrogen chloride-MeOH and
13
tions. 16S rRNA (positions 56–1495, Escherichia coli numbering system ) was stirred at 65 °C for 3 h. The solution was concentrated in vacuo. The residue
amplified by PCR and sequenced. A search for the most closely related was dissolved in a small amount of MeOH and applied to Sephadex LH-20 (GE
sequences was performed using the EZ Taxon database (http://www.ezbiocloud. Healthcare Bio-Sciences, Uppsala, Sweden). The fractions containing
methyl glycoside were collected and dried. The residue was subjected to
hydrophilic interaction liquid chromatography (XBridge Amide, 3.5 μm,
10 mm id× 150 mm, Waters, 90–50% acetonitrile, three times). The pure
Fermentation and purification of quadoctomycin
A slant culture of Streptomyces sp. MM168-141F8 was inoculated into a 500-ml fraction containing methyl glycoside was collected and concentrated to dryness
28
baffled Erlenmeyer flask containing 110 ml of a seed medium consisting of to give 1.6 mg of methyl-α-mannoside: colorless solid; [α]D +71° (c 0.1,
1
2
.0% galactose, 2.0% dextrin, 1.0% Bacto Soytone (Becton Dickinson and H2O); H NMR (D2O, 500 MHz) δ 4.74 (1H, d, 1.7, H-1), 3.91 (1H, dd, 3.4,
Company, Franklin Lakes, NJ, USA), 0.5% corn steep liquor (Kogo Starch, 1.7, H-2), 3.88 (1H, dd 12.3, 2.0, H-6b), 3.73 (1H, dd, 12.3, 5.7, H-6a), 3.73
Chiba, Japan), 0.2% (NH ) SO and 0.2% CaCO , pH 7.4 before sterilization. (1H, m, H-3), 3.62 (1H, t 9.7, H-4), 3.59 (1H, m, H-5), 3.39 (3H, s, H-1OMe);
4
2
4
3
13
The culture was incubated at 27 °C for 3 days on a rotary shaker at 180 rpm.
Production was performed using a solid medium (15 g of pressed barley and (d, C-2), 69.4 (d, C-4), 63.6 (t, C-6), 57.4 (q, C-1OMe); HRESI/MS [M+Na]+
5 ml of deionized water). Portions of 7 ml of this seed culture were inoculated m/z 217.0685 (calcd for C H O Na, 217.0683).
C NMR (D2O, 125 MHz) δ 103.5 (d, C-1), 75.2 (d, C-5), 73.2 (d, C-3), 72.6
2
7
14 6
The Journal of Antibiotics