ARTICLE IN PRESS
A. Le Bail, F. Calvayrac / Journal of Solid State Chemistry 179 (2006) 3159–3166
3160
et al. [8–9], using Cerius2 [10] and GULP [11] in a sequence
of simulated annealing plus minimization steps for the
aggregation of large structural motifs, but no completely
new structure type was predicted, apparently, and not all
known structures were listed (t-AlF3 was lacking). From
the present study, 12 different AlF3 structure types will be
described, the conditions of the simulations are discussed
below.
In a second step the F atoms were added at the
midpoints of the Al–Al first neighbours and it was verified
by distance and cell improvements (by the MC method as
well) that regular AlF6 polyhedra could really be built, i.e.,
that there was a deep local minima existing close to this
previously selected rough arrangement of Al atoms. The
cost function allowing to establish a minimum is based on
the verification of the provided ideal distances Al–F
˚
˚
˚
(1.81 A), F–F (2.56 A) and Al–Al (3.5 A) first neighbours.
The total R factor is defined by the equation:
2. Prediction conditions
p
R ¼ ½ðR1 þ R2 þ R3Þ=ðR01 þ R02 þ R03Þꢀ,
The knowledge assumed in this study is limited to the
Al–F, F–F and Al–Al ideal first neighbour distances, and
the exclusive corner-sharing connection mode. More
generally, GRINSP makes use of the common geometrical
characteristics of a well-defined group of crystal structures
(N-connected 3D nets with N ¼ 3; 4; 5; 6 and possible
combinations of two N values), allowing to explore the
possible models, retrieving those already known (a proof of
efficiency), and listing those yet to be synthesized, in a
selected range of cell parameters.
Exploring AB3 models needed 230 days of calculation on
a single 2.4 GHz processor PC, 1 day per space group (SG).
GRINSP is a Monte Carlo (MC) software, applying a
pseudo-random number sequence to the heuristic solution
of the structural problem. Once a SG is selected, a first Al
atom is placed in a box (with cell parameters relations in
agreement with the SG) whose dimensions are selected at
random, at a Wyckoff position selected at random. One
then checks if the model is not already fulfilling all
requirements: one Al atom should have six Al first
where Rn and R0n for n ¼ 1; 2; 3 are defined by the
expressions:
2
Rn ¼ S½wnðd0n ꢁ dnÞꢀ ,
2
R0n ¼ S½wnd0nꢀ ,
where the d0n values for n ¼ 123 are the ideal first
interatomic distances Al–F ðn ¼ 1Þ, F–F ðn ¼ 2Þ and Al–Al
ðn ¼ 3Þ, whereas the dn values are the corresponding
observed distances in the structural model for these atom
pairs. The selected wn being w1 ¼ 2:0, w2 ¼ 0:61 and
w3 ¼ 0:23, attributing more weight to the respect of the
Al–F first distances. Models were retained if Ro0:03, they
may need further optimizations by using bond valence
rules, or energy calculation (as shown below), however, in
many cases the predicted cell parameters differ by less than
3% from the real ones when the real compounds are built
up from ideal polyhedra, which was the case with dense
SiO2 polymorphs or zeolites previously studied by
GRINSP [7] and AlF3 phases. During this second step,
the atoms are moving, but no jump is allowed because a
jump would break the coordinations established at the first
step. This is a simple routine for local optimization. The
change in the cell parameters from the rough structure
candidate to the final model may be quite considerable (up
to 30%). During the optimization, the original SG may not
be conserved, so that the final structure is always proposed
in the P1 SG, presented in a CIF file. The final choice of the
real symmetry has to be done by using a programme able
to detect missing symmetries, like PLATON [12].
One given model can be identified in different SGs with
slightly different or equal R values. For the automatic
recognition that a model is known or was already obtained
in previous predictions, tools are needed. An algorithm for
the efficient comparison of periodic structure (CMPZ) was
recently presented [13]. The way GRINSP recognizes a
structure type is by comparing the coordination sequence
(CS) [14] of any model with a list of previously established
ones (as well as with the other CS already stored during the
current run). CS originally developed for zeolites was
extended to the N-connected frameworks inside of the
GRINSP algorithm. Only one model was retained corre-
sponding to one structure type, selecting the model with
best R value and higher symmetry.
˚
neighbours in the approximated range 3.570.6 A, them-
˚
selves not distant outside of the range 4.2–6.7 A, as second
neighbours. The fact that distances are given a large
tolerance range allows many solutions to be captured
which may not correspond to regular polyhedra at this
stage. In other words, the model may stay far above the
local minima of interest. If the model is not already
completed, a second Al atom is inserted randomly at a new
(or identical) Wyckoff position, at random in the free space
(delimited by the distance ranges above) in the neighbour-
hood of the first atom and of its equivalents, if any. Then
this new model is checked again, etc., until a full agreement
with the geometrical specifications is reached. If after some
trials, no satisfying model is found, a new first Al will be
placed, and so on. For a given set of cell parameters,
300,000 MC events were performed, and at least 20,000 sets
of random cell parameters were explored for each SG. In
this first step, atoms do not move (this is not a simulated
annealing approach), their possible positions are tested and
checked, then they are retained or not. The cell is
progressively filled up to completely respect the geometrical
restraints, if possible. The total number of Al atoms placed
is not predetermined. For that search, the cell parameters
˚
were not larger than 16 A (known phases have cell
˚
parameters all smaller than 13 A).