S. Matthew et al. / Tetrahedron 64 (2008) 4081e4089
4087
and ROESY data, see Table 1; HRAPCI/ESIMS m/z
[MþH]þ 1069.4400, 1071.4400, ion cluster (1:1) (calcd
for C46H7479BrN10O12S, 1069.4392; C46H7481BrN10O12S,
1071.4371).
2.70 (s, 3H); 13C NMR (100 MHz, D2O/pH¼2) d 171.4,
155.3, 134.2, 130.4, 128.0, 113.5, 111.4, 62.9, 56.7, 34.2,
32.3; APCI/ESIMS m/z 288/290 (1:1, [MþH]þ ion cluster),
HRAPCI/ESIMS m/z [MþH]þ 288.0232 (calcd for
C11H1579BrNO3, 288.0235).
3.3.2. Pompanopeptin B (2)
Colorless, amorphous solid; [a]2D0 ꢀ24.0 (c 0.10, MeOH);
UV (MeOH) lmax (log 3) 220 (4.07), 280 (sh) (3.37) nm; IR
(film) nmax 3331, 2935, 1720e1630, 1549, 1515, 1451,
1239 cmꢀ1; for 1H NMR, 13C NMR, COSY, HMBC, and RO-
ESY data, see Table 2; HRAPCI/ESIMS m/z [MþH]þ
958.5319 (calcd for C51H72N7O11, 958.5290).
3.4.2. Acid hydrolysis and chiral HPLC analysis of 1
A sample of compound 1 (0.2 mg) was dissolved in 6 N
HCl (0.6 mL) and heated at 110 ꢂC for 24 h. The hydrolyzate
was concentrated to dryness, re-suspended in H2O (100 mL),
filtered, and subjected to chiral HPLC analysis (Phenomenex
Chirex 3126 N,S-dioctyl-(D)-penicillamine, 250ꢃ4.60 mm,
5 mm; solvent, 2 mM CuSO4 or 2 mM CuSO4eMeCN
(95:5); flow rate, 1.0 mL/min; UV detection 254 nm). The ab-
solute configurations of the amino acid units in 1 (tR, min)
were established as L-Arg (7.5), L-Met(O) (13.5, 14.5) (solvent
2 mM CuSO4); L-Thr (7.8), L-Val (19.2), L-Ile (43.5) (solvent
95:5) by comparison of the retention times tR (min) with those
of standard amino acids. The retention times tR (min) for the
other standard amino acid isomers were 11.4 (D-Arg), 16.5,
18.5 (D-Met(O)) (solvent 2 mM CuSO4); 8.4 (D-Thr), 9.8
(L-allo-Thr), 10.2 (D-allo-Thr), 25.8 (D-Val), 37.5 (L-allo-Ile),
47.0 (D-allo-Ile), 57.5 (D-Ile) (solvent 95:5).
3.4. Determination of absolute configuration of amino
acids in 1
3.4.1. Synthesis of standard N,O-diMe-30-Br-L-Tyr (3d)
Boc-OMe-L-Tyr (3a) (300 mg, 1.02 mmol, 1 equiv) was
dissolved in THF (3.06 mL) and the mixture was cooled to
0 ꢂC. To this solution were added CH3I (8.13 mmol, 8.0 equiv)
and dry NaH (73.1 mg, 3.05 mmol, 3 equiv). The solution was
stirred at room temperature under N2 for 24 h. The reaction
was quenched by addition of H2O, acidified, and partitioned
with EtOAc and H2O. The organic layer was neutralized
with saturated aqueous NaHCO3 and sequentially washed with
H2O, 5% Na2S2O3, and H2O, and then dried, filtered, and
concentrated to afford Boc-N,O-diMe-L-Tyr (3b)14 as a pale
yellow oil (280 mg, 88% yield) {HRAPCI/ESIMS m/z
[MþNa]þ 332.1470 (calcd for C16H23NO5Na, 332.1474)}.
Boc deprotection was achieved by treating 3b with TFA in
CH2Cl2 and stirring for 3 h at room temperature. The reaction
product 3c was then applied on a Dowex 50WX4-50 ion ex-
change resin and eluted with 4 N NH4OH and dried. Compound
3c was obtained as a colorless, amorphous solid (190 mg, 100%
yield); [a]2D0 þ7.5 (c 0.30, H2O); IR (film) nmax 2961, 2873,
2360, 2341, 1735, 1671, 1613, 1514, 1466, 1442, 1250, 1181,
3.4.3. Oxidation and chiral HPLC analysis of 1
Compound 1 (0.5 mg) was dissolved in glacial acetic acid
(0.5 mL), followed by the addition of CrO3 (2 mg) and stirred
at room temperature for 2 h. The resulting product was applied
onto a C18 SPE cartridge eluting with H2O, dried, and sub-
jected to acid hydrolysis and chiral HPLC analysis using
2 mM CuSO4eMeCN (95:5). A peak detected in the hydroly-
zate at tR 65.0 min corresponded to the generated L-Glu,
whereas standard D-Glu eluted at tR 70.2 min under identical
condition.
3.4.4. Determination of absolute configuration of N,O-
diMe-30-Br-Tyr in 1 by advanced Marfey’s analysis
1143, 1031, 835 cmꢀ1
;
1H NMR (400 MHz, D2O/pH¼2)
d 7.17 (d, 2H, J¼8.8 Hz), 6.92 (d, 2H, J¼8.8 Hz), 4.17 (t,
1H, J¼6.2 Hz), 3.75 (s, 3H), 3.24 (dd, 1H, J¼14.9, 6.2 Hz),
3.17 (dd, 1H, J¼14.9, 6.2 Hz), 2.68 (s, 3H); 13C NMR
(100 MHz, D2O/pH¼2) d 171.1, 159.0, 131.1, 126.2, 115.0,
62.6, 55.8, 34.4, 32.3; HRAPCI/ESIMS m/z [MþH]þ
210.1128 (calcd for C11H16NO3, 210.1130).
Aliquots of hydrolyzate of 1 and N,O-diMe-30-Br-L-Tyr
standard (3d) were each treated with 1 M NaHCO3 (10 mL)
and a 1% solution of either L-FDLA or DL-FDLA (1-fluoro-
2,4-dinitrophenyl-5-leucinamide) in acetone and heated at
80 ꢂC for 3 min. The solutions were cooled, neutralized with
2 N HCl (5 mL), dried and dissolved in H2OeMeCN (1:1),
and analyzed by LCeMS (Phenomenex Synergi 4u Hydro-
RP 80A, 2ꢃ150 mm, 4 mm; flow rate, 0.15 mL/min; UV
detection 340 nm) using a step gradient of aqueous MeCN
containing 0.1% HCOOH and increasing MeCN content
(10e50% for 15 min, 50e70% for 55 min, then 70e95% for
60 min). LCeMS analysis of hydrolyzate of 1 of L-FDLA
derivatives detected the mono adduct of N,O-diMe-Br-L-Tyr
(tR 28.5 min, [MþH]þ m/z 568/570) and also the di-L-FDLA
derivative (tR 53.0 min, [MþH]þ m/z 862/864) arising because
of partial O-demethylation under acid hydrolysis conditions.
In contrast, mono and/or di-FDLA derivatives of the corre-
sponding D-isomer were not detected, which would have
been eluted at tR 29.4 and 55.1 min, respectively. These reten-
tion times were inferred from derivatization of acid-treated
Compound 3c was then subjected to bromination.15 Briefly,
Br2 (6.5 mL) was added dropwise to an ice-cooled solution of
3c (25 mg, 0.12 mmol) in 98% formic acid (150 mL) with
vigorous stirring. After stirring for 6 h, the colorless paste
was dissolved in 3 N HCl (150 mL), boiled for 1 h, and con-
centrated to dryness in vacuo. The residue was dissolved in
boiling water, filtered, and neutralized (pH¼7) with 6 N
NH4OH to obtain 3d as a colorless amorphous powder
(27 mg, 75% yield). [a]2D0 ꢀ10.4 (c 0.08, H2O); IR (film)
nmax 3133, 3038, 1736, 1604, 1499, 1403, 1282, 1258, 1150,
1
1054, 1018 cmꢀ1; H NMR (400 MHz, D2O/pH¼2) d 7.47
(d, 1H, J¼2.0 Hz), 7.22 (dd, 1H, J¼8.4, 2.0 Hz), 7.03 (d,
1H, J¼8.4 Hz), 4.11 (t, 1H, J¼6.0 Hz), 3.85 (s, 3H), 3.23
(dd, 1H, J¼14.6, 6.0 Hz), 3.16 (dd, 1H, J¼14.6, 6.0 Hz),