Thiazolidinediones as Novel Neuroprotectants
275
3-(4-(Methylsulfonyl)Phenyl)Thiazolidine-2,4-Dione (Com-
GmbH (Sankt Augustin, Germany). Pictures for two-dimensional
pound 11). According to procedure A from 4-(methylsulfonyl)aniline representation of the docking solution were generated with pose
(1.06 g, 6.17 mmol), 1,19-carbonyldiimidazole (1.00 g, 6.17 mmol), and view (Stierand and Rarey, 2007), as implemented in LeadIT, and
thioglycolic acid methyl ester (0.50 ml, 5.61 mmol). Purification was
exported from the program in the same way as the three-dimensional
as follows: recrystallization from toluene to yield a white solid (673 mg, representation.
2.48 mmol, 44%); 1H-NMR (DMSO-d6) d 8.07–8.10 (m, 2H), 7.62–7.64
(m, 2H), 4.33 (s, 2H), 3.29 (s, 3H); 13C-NMR (DMSO-d6) d 171.7, 171.0,
Expression and Purification of Recombinant Bid
140.9, 137.6, 128.8, 128.0, 43.3, 34.5; MS (EI-HRMS) m/z calculated
for C10H9NO4S: 270.9973; found: 270.9973 [M]1.
Full-length Bid with a hexa-histidine tag at the N terminus
was expressed in the pET15b vector (Addgene, Cambridge, MA) in
competent Escherichia coli Rosetta 2 (DE3) cells (Novagene, Merck
KGaA, Darmstadt, Germany). The protein was recovered in the
soluble bacteria fraction and purified by ÄKTAprime plus chro-
matography on a Ni Sepharose HisTrap FF column, followed by an
ion exchange HiTrap Q HP column and a HiLoad 16/600 Superdex
75-pg column (GE Healthcare Bio-Science AB, Uppsala, Sweden).
Highly pure protein was eluted as shown by SDS-PAGE and
Coomassie staining and stored in 20 mM Tris pH 7.4, 50 mM NaCl
at 4°C until use.
3-(3,4-Dimethylphenyl)Thiazolidine-2,4-Dione (Compound
12). According to procedure A from 3,4-dimethylaniline (748 mg,
6.17 mmol), 1,19-carbonyldiimidazole (1.00 g, 6.17 mmol), and
thioglycolic acid methyl ester (0.50 ml, 5.61 mmol), purification
was as follows: recrystallization from toluene to yield a white solid
(533 mg, 2.41 mmol, 43%); 1H-NMR (DMSO-d6) d 7.25–7.27 (m, 1H),
6.99–7.06 (m, 2H), 4.29 (s, 2H), 2.26 (s, 3H), 2.24 (s, 3H); 13C-NMR
(DMSO-d6) d 171.9, 171.4, 137.3, 137.2, 130.9, 129.9, 128.4, 125.0,
34.1, 19.2, 19.0. MS (EI-HRMS) m/z calculated for C11H11NO2S:
221.0496; found: 221.0515 [M]1.
3-(5,6,7,8-Tetrahydronaphthalen-2-yl)Tiazolidine-2,4-
Dione (Compound 13). According to procedure A from 5,6,7,
8-tetrahydronaphthalen-2-amine (908 mg, 6.17 mmol), 1,19-carbonyl-
diimidazole (1.00 g, 6.17 mmol), and thioglycolic acid methyl ester (0.50
ml, 5.61 mmol), purification was as follows: Flash column chromatog-
raphy (EtOAc, isohexane; 4:1) to yield a white solid (592 mg, 4.43
mmol, 43%). 1H-NMR (DMSO-d6) d 7.16-7.18 (m, 1H), 6.97–
6.99 (m, 2H), 4.28 (s, 2H), 2.73–2.75 (m, 4H), 1.70–1.78 (m, 4H).
13C-NMR (DMSO-d6) d 172.2, 171.4, 137.6, 137.5, 130.6, 129.5,
127.9, 124.7, 34.1, 28.6, 28.4, 22.4, 22.3. MS (EI-HRMS) m/z
calculated for C13H13NO2S: 247.0667; found: 247.0670 [M]1.
3-(4-Methoxyphenyl)Thiazolidine-2,4-Dione (Compound 14). Ac-
cording to procedure A from 4-methoxyaniline (0.76 g, 6.17 mmol), 1,19-
carbonyldiimidazole (1.00 g, 6.17 mmol), and thioglycolic acid methyl
ester (0.50 ml, 5.61 mmol), purification was as follows: recrystallization
from toluene to yield a white solid (1.02 mg, 4.76 mmol, 74%); 1H-NMR
(DMSO-d6) d 7.20–7.22 (m, 2H), 7.03–7.05 (m, 2H), 4.28 (s, 2H), 3.79
(s, 3H); 13C-NMR (DMSO-d6) d 172.0, 171.5, 159.3, 129.0 125.8, 114.3,
55.3, 34.1. MS (EI-HRMS) m/z calculated for C16H13NO2S: 223.0303;
found: 223.0296 [M]1.
Label-Free Biochemical Assay
Biochemical assays were performed using the Corning Epic
label-free technology on the EnSpire Multimode Plate Reader
(PerkinElmer, Rodgau, Germany) (O’Malley et al., 2007). Bid im-
mobilization on the optical biosensors was accomplished by adding
200 mg/ml protein in 20 mM sodium acetate, pH 4.0, using a
12-channel Thermo Scientific matrix multichannel equalizer pi-
pette followed by overnight incubation at 4°C. The microplate was
subsequently washed three times with phosphate-buffered saline
(PBS; pH 7.4) buffer with 0.005% Tween by a robotic wash station.
After washing, the plate was equilibrated in the assay buffer (PBS,
1% DMSO, pH 7.4) for 2 hours (30 ml). After the incubation, a
baseline reading was recorded. After another washing step, 15 ml of
the assay buffer, together with 15 ml of various thiazolidinediones,
prepared as described previously, was dispensed in the plate. The final
readings were taken over a period of 1 hour. The label-free re-
sponses were measured as shifts in reflected wavelength and were
expressed in picometers. Results were analyzed using the EnSpire
label-free user interface software. The difference between the last
baseline measurements and the maximum signal was used to de-
termine the KD values. Graphs were generated using GraphPad
PrismR V-5.01 (GraphPad Software, La Jolla, CA). Compounds used
for the Bid assay were diluted with the assay buffer (PBS, 1%
DMSO, pH 7.4) at a working concentration of 200 mM (100 mM final
concentration in the plate) and then further diluted in the assay buffer
directly in a 384-well polypropylene plate for a total of four different
concentrations.
3-(4-Benzylphenyl)Thiazolidine-2,4-Dione (Compound 15). Accord-
ing to procedure A from 4-benzylaniline (1.13 g, 6.17 mmol), 1,19-
carbonyldiimidazole (1.00 g, 6.17 mmol), and thioglycolic acid methyl
ester (0.50 ml, 5.61 mmol), purification was as follows: recrystallization
from toluene to yield a white solid (1.35 g, 4.76 mmol, 85%), 1H-NMR
(DMSO-d6) d 7.26–7.37 (m, 6H), 7.18–7.22 (m, 3H), 4.29 (s, 2H), 3.99
(s, 2H); 13C-NMR (DMSO-d6) d 171.9, 171.4, 142.2, 140.7, 131.2, 129.2,
128.7, 128.5, 127.8, 126.1, 40.6, 34.2. MS (EI-HRMS) m/z calculated for
C
16H13NO2S: 283.0667; found: 283.0654 [M]1.
3-(3,4-Dimethoxyphenyl)Thiazolidine-2,4-Dione (Compound
16). According to procedure A from 3,4-dimethoxyaniline (945 mg,
6.17 mmol), 1,19-carbonyldiimidazole (1.00 g, 6.17 mmol) and
thioglycolic acid methyl ester (0.50 ml, 5.61 mmol), purification was as
follows: recrystallization from toluene to yield a white solid (865 mg,
3.42 mmol, 63%); 1H-NMR (DMSO-d6) d 7.04–7.06 (m, 1H,), 6.92–
6.93 (m, 1H), 6.81–6.83 (m, 1H), 4.28 (s, 2H), 3.79 (s, 3H), 3.73
(s, 3H) 13C-NMR (DMSO-d6) d 166.2, 165.0, 151.0, 149.0, 134.3,
121.9, 115.9, 115.8, 55.7, 34.7. MS (EI-HRMS) m/z calculated for
Cell Culture of HT-22 Cells
HT-22 cells, derived from immortalized hippocampal neurons were
cultured in Dulbecco’s modified Eagle’s medium (Invitrogen, Karls-
ruhe, Germany) supplemented with 10% heat-inactivated fetal calf
serum, 100 U/ml penicillin, 100 mg/ml streptomycin, and 2 mM
glutamine (PAA Laboratories GmbH, Cölbe, Germany). Cells were
cultured at densities of 10,000 to 12,000 cells/well either in standard
96-well plates (Greiner, Frickenhausen, Germany) for MTT [3-(4,5-
dimethylthiazol-2-yl)-2,5-diphenyltetrazolium-bromide] assays or in
E-plates 96 (Roche Diagnostics, Penzberg, Germany) for impedance
measurement. For plasmids and gene transfer and measuring of tBid-
induced toxicity, cells were cultured at densities of 40,000 cells/wells
in standard 24-well plates (Greiner).
C11H11NO4S: 253.0409; found: 253.023 [M]1
.
Molecular Docking
According to Becattini et al. (2006), docking studies were conducted
using the NMR solution structure of mouse BID from the Protein Data
Bank entry PDB ID 1DDB (McDonnell et al., 1999). All compounds
were converted from SMILES notation into Sybyl mol2 format using
CORINA (Molecular Networks GmbH, Erlangen, Germany). Protein
preparation and docking were performed using FlexX (Rarey et al.,
1996), available within the LeadIT version 2.1.3 from BioSolveIT
Primary Cerebrocortical Neuron Culture
Primary cortical neurons were prepared from embryonic brains
(E16-18) of rats. Meninges were removed and the cortical neurons