B, O-chelated azadipyrromethenes as near-IR probes

Article abstract of DOI:10.1021/ol8018506

(Chemical Equation Presented Complementary synthetic routes to a new class of near-IR fluorophores are described. These allow facile access (four synthetic steps) to the core fluorophore and substituted derivatives with emissions between 740 and 780 nm in good quantum yields.

Full text of DOI:10.1021/ol8018506

ORGANIC
LETTERS
2008
Vol. 10, No. 21
4771-4774
B,O-Chelated Azadipyrromethenes as
Near-IR Probes
Aurore Loudet,† Rakeshwar Bandichhor,† Kevin Burgess,*,† Aniello Palma,‡
Shane O. McDonnell,‡ Michael J. Hall,‡ and Donal F. O’Shea*,‡
Chemistry Department, Texas A&M UniVersity, P.O. Box 30012, College Station,
Texas 77842, and Centre for Synthesis and Chemical Biology, School of Chemistry and
Chemical Biology, UniVersity College Dublin, Belfield, Dublin 4, Ireland
burgess@tamu.edu; donal.f.oshea@ucd.ie
Received August 8, 2008
ABSTRACT
Complementary synthetic routes to a new class of near-IR fluorophores are described. These allow facile access (four synthetic steps) to the
core fluorophore and substituted derivatives with emissions between 740 and 780 nm in good quantum yields.
Surprisingly few fluorescent probes emit in the near-IR
region with high quantum yields.1,2 Such compounds are
valuable for intracellular imaging because autofluorescence
in cells tends to obscure emissions at wavelengths below
approximately 550 nm, but this factor becomes less of an
issue at longer wavelengths. Probes that emit in the 750-900
nm region are, therefore, relatively easy to visualize in ViVo.3
Cyanine dyes are currently the most widely used probes for
this wavelength region, but their quantum yields and pho-
tostabilities are suboptimal.4 Thus there is need for new
fluorescent probes that emit efficiently above 750 nm.
BODIPY dyes are between 530 and 630 nm, and this is
suboptimal for intracellular or tissue imaging. Previous work
by Burgess et al.,6-8 and others,9,10 successfully explored a
modification strategy for shifting BODIPY-fluorescence
emissions to the red (Figure 1). Adaptation of the core
fluorophore scaffold by intramolecular B-O ring formation
to produce the 6,6-5-6-5-6,6 ring system B gave an ca. 65
nm bathochromatic shift (compare C and D),11 but the
fluorescence emission wavelengths were less than 700 nm.12
O’Shea and co-workers have demonstrated that BF2
chelated tetraaryl-substituted azadipyrromethenes E fluoresce
(5) Boyer, J. H.; Haag, A. M.; Sathyamoorthi, G.; Soong, M. L.;
Dyes based on the 5-6-5 fused BODIPY ring system A
are popular in biotechnology because they tend to have
relatively sharp fluorescence emission characteristics, and high
quantum yields.5 However, the emission wavelengths of most
Thangaraj, K.; Pavlopoulos, T. G. Heteroat. Chem. 1993, 39–49
(6) Chen, J.; Burghart, A.; Derecskei-Kovacs, A.; Burgess, K. J. Org.
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.
(7) Thivierge, C.; Bandichhor, R.; Burgess, K. Org. Lett. 2007, 2135–
2138
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(8) Loudet, A.; Burgess, K. Chem. ReV. 2007, 4891–4932
(9) Umezawa, K.; Nakamura, Y.; Makino, H.; Citterio, D.; Suzuki, K.
.
† Texas A&M University.
J. Am. Chem. Soc. 2008, 1550–1551.
‡ University College Dublin.
(10) Ulrich, G.; Ziessel, R.; Harriman, A. Angew. Chem., Int. Ed. 2008,
(1) Sun, C.; Yang, J.; Li, L.; Wu, X.; Liu, Y.; Liu, S. J. Chromatogr.,
1184–1201
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B 2004, 173–90
.
(11) Kim, H.; Burghart, A.; Welch, M. B.; Reibenspies, J.; Burgess, K.
Chem. Commun. 1999, 1889–90.
(2) Kiyose, K.; Kojima, H.; Nagano, T. Chem.-Asian J. 2008, 50, 6–
515
.
(12) Burghart, A.; Kim, H.; Welch, M. B.; Thoresen, L. H.; Reibenspies,
J.; Burgess, K.; Bergstroem, F.; Johansson, L. B. A. J. Org. Chem. 1999,
7813–7819.
(3) Frangioni, J. V. Curr. Opin. Chem. Biol. 2003, 626–34.
(4) Benson, R. C.; Kues, H. A. J. Chem. Eng. Data 1977, 379–83.
10.1021/ol8018506 CCC: $40.75
Published on Web 09/25/2008
2008 American Chemical Society

Figure 1. Comparison of fluorescence emission wavelength maxima
and quantum yields (in CHCl3) for BODIPY class (A) and a B-O
ring-extended class (B).
Figure 2. Representative fluorescence emission wavelength maxi-
mum and quantum yield (in CHCl3) for BF2-chelated tetra-
arylazadipyrromethenes (E) and a new B-O ring extended class
(G).
with wavelength maxima between 670 and 720 nm with para-
oriented electron donating groups being particularly effective
in enhancing the red-shifted fluorescence, e.g. F (Figure
2).13-19 This is close to the 750-900 nm region at which
light permeation through tissue is most effective. Subse-
quently, it was shown that derivatives with extended aromatic
groups do emit in the near-IR region.20 The premise of this
paper is that it would be advantagous to “hybridize” the
structures B and E to shift their emissions beyond 750 nm.
On the basis of the structures shown in Figure 1 it was
therefore logical to introduce an intramolecular B,O-chelate
on a tetraaryl boraazadipyrromethene scaffold, e.g., G. The
studies described here feature compounds 1 of this type; it
emerges that they can emit in this region.
Scheme 1. Synthesis of Near-IR Fluorophores 1
Scheme 1 shows one approach to the synthesis of the target
class 1 from the precursors 2a-d which can be synthesized
in four steps from commercially available materials.21 A solid
state X-ray structure determination of 2a illustrated that both
2-MeOC6H4 rings lie out of the plane of the central
chromophore with torsion angles of 42.7° and 61.4° (Sup-
porting Information). Compounds 1 were obtained from the
corresponding 2 by treatment with boron tribromide in
dichloromethane. We anticipated that demethylation of the
(13) Killoran, J.; Allen, L.; Gallagher, J. F.; Gallagher, W. M.; O’Shea,
D. F. Chem. Commun. 2002, 1862–1863
(14) Gorman, A.; Killoran, J.; O’Shea, C.; Kenna, T.; Gallagher, W. M.;
O’Shea, D. F. J. Am. Chem. Soc. 2004, 10619–31
(15) McDonnell, S. O.; Hall, M. J.; Allen, L. T.; Byrne, A.; Gallagher,
W. M.; O’Shea, D. F. J. Am. Chem. Soc. 2005, 16360–16361
(16) Killoran, J.; O’Shea, D. F. Chem. Commun. 2006, 1503–1505
.
methoxy groups with BBr3 to the corresponding bisphenols
would lead to spontaneous cyclization giving the target
materials 1. This proved correct for substrates 1a and 1b
with products isolated in 61% and 36% yields, respectively,
following chromatography. Furthermore, in addition to 1a
and 1b, compounds corresponding to bromination of the
pyrrole ring, i.e., 1e-f, were also observed. This is somewhat
surprising since this did not occur for the synthesis of the B
class, but it is also potentially useful if the compounds are
.
.
.
(17) Hall, M. J.; Allen, L. T.; O’Shea, D. F. Org. Biomol. Chem. 2006,
776–780
.
(18) O’Shea, D.; Killoran, J.; Gallagher, W. Compounds useful as
photodynamic therapeutic agents. U.S. Patent. 7220732, 20030324, 2003
(19) Killoran, J.; McDonnell, S. O.; Gallagher, J. F.; O’Shea, D. F. New
J. Chem. 2008, 483–489
.
.
(20) Zhao, W.; Carreira, E. M. Angew. Chem., Int. Ed. 2005, 1677–9.
(21) Loudet, A.; Bandichhor, R.; Wu, L.; Burgess, K. Tetrahedron 2008,
3642–3654.
4772
Org. Lett., Vol. 10, No. 21, 2008

to be modified further.6 Systems 1c and 1d were not air-
stable, and were not isolated.
Prior experience with BF2-chelated tetraarylazadipyr-
romethene derivatives such as F indicated that electron-
releasing R-groups might red-shift the fluorescence maxima
of the B,O-chelated compounds 1. An alternative route, which
avoids the aryl demethylation conditions used in Scheme 1,
was therefore developed to allow inclusion of 4-methoxy
groups (Scheme 2). This required conjugate addition of
Scheme 2. Four-Step Synthesis to Near-IR Fluorophores 1
Figure 3. X-ray crystal structure of 1h. Selected bond lengths B-O
) 1.471(2) and 1.476(2) and B-N ) 1.513(2) and 1.514(2); bond
angles O-B-O ) 108.0(1)° and N-B-N ) 103.9(1)°.
Figure 4. Normalized absorbance (solid line) and emission (dashed
line) for 2a (blue) and 1a (red) in CHCl3.
nitromethane to the chalcones 3a,g,h. Heating of 4a,g,h with
an ammonium source gave phenolic-substituted azadipyr-
romethenes 5a,g,h. Fluorophores 1a,g,h were obtained in a
one-pot BF2 chelation and intramolecular phenolic oxygen-
fluorine displacement thereby generating the structurally
constraining benzo{1,3,2}oxazaborinine rings. Presumably
this synthetic route could be modified to include functional
groups in place of the p-methoxy position of 1g,h for
bioconjugation.
Single-crystal X-ray structures for 1h and 1f were obtained
(Figure 3 and Supporting Information). The benzo-fused 6,6-
5-6-5-6,6 ring structure was shown to be tetrahedral around
the boron atom. Consequently the molecule is chiral just as
for the other B,O-chelates B.
Figure 4 highlights the dramatic spectroscopic contrast
between the constrained derivative 1a and its unconstrained
precursor 2a. Restrictions caused by the B-O bonds in 1a
gave bathochromic shifts in both the absorption (86 nm) and
emission maxima (58 nm) and over a 7-fold increase in the
quantum yield from 0.07 to 0.51 (Figure 4, Table 1, entries
Table 1. Photophysical Properties of 1 in Toluene
entry
λmax (nm)
λf (nm)
fwhm (nm)a
Φfb
1
2
3
4
5
6
7
2a
1a
1b
1e
1f
642
728
745
747
755
765
728
688
746
760
769
776
782
742
43
36
36
38
36
40
36
0.0710
0.51
0.46
0.35
0.36
1g
1h
0.18c
0.17c
a Full width at half-maximum height. b Measured in 1% pyridinein
toluene. ZnPtc (Φf 0.30) was used as standard. c Measured in CHCl3.
1 and 2). These trends were observed for all derivatives of
1 with additional hypso- and bathochromatic shifts due to
the further influence of the aryl and pyrrole substituents.
Introduction of bromine (1b) and methoxy (1h) aryl-
substituents resulted in a 14 nm bathochromic and 4 nm
hypsochromic shift for fluorescence maxima, respectively,
when compared to 1a (entries 3 and 7). The longest
Org. Lett., Vol. 10, No. 21, 2008
4773

absorbance/emission wavelength maxima (765/782 nm) were
observed for derivative 1g containing electron donating
methoxy substituents on the benzo{1,3,2}oxazaborinine rings
(entry 6). This pronounced red-shift for fluorescence maxi-
mum of 94 nm when compared to 2a and 36 nm from 1a
places it into the near-IR spectral region (Figure 5). Interest-
Table 2. Effects of the Solvent Polarity on the Absorption.
λmax abs (fwhm)a/nm
CHCl3
THF
dioxane
cyclohexane
DMF
2a
1a
1g
642 (67)
725 (33)
764 (43)
643 (68)
724 (34)
764 (47)
636 (67)
724 (34)
764 (42)
640 (62)
724 (31)
761 (37)
643 (71)
725 (36)
766 (47)
a Full width at half-maximum height.
polar solvents (Table 3 and Supporting Information). Large
Stokes shift values of 34-56 nm in various solvents were
recorded for 2a; however, this trend did not translate to the
conformationally restricted fluorophores 1a,g (9 and 19 nm,
Table 3).
Table 3. Effects of the Solvent Polarity on the Fluorescence
λmax abs (Stokes shift)/nm
CHCl3
THF
dioxane
cyclohexane
DMF
2a
1a
1g
686 (44)
737 (12)
778 (14)
682 (39)
738 (14)
782 (18)
681 (45)
738 (14)
778 (14)
674 (34)
733 (9)
771 (10)
696 (56)
738 (13)
785 (19)
In conclusion, two efficient synthetic routes to a new class
of near-IR fluorophore 1 have been accomplished. The highly
favorable emission wavelengths and quantum yields are
strongly indicative of future applications in biotechnology.
The ease at which key functional groups (halogen and ether)
can be included on the core fluorophore indicates that future
structural manipulation would be possible to allow adaption
for specific use as in Vitro and noninvasive in ViVo imaging
agents.
Acknowledgment. Dr. Burgess thanks the members of
the TAMU/LBMS-Applications Laboratory directed by Dr.
Shane Tichy for assistance with mass spectrometry and Dr.
Nattamai Bhuvanesh for assistance with crystallographic data.
Support for this work was provided by The National Institutes
of Health (GM72041) and by The Robert A. Welch Founda-
tion. Dr. O’Shea thanks funding support from the Program
for Research in Third-Level Institutions administered by the
HEA, Dr. D. Rai of the CSCB Mass Spectrometry Centre,
and Dr. H. Mueller-Bunz of the UCD Crystallographic
Centre.
Figure 5. Normalized absorbance (a) and (b) emission spectra
(excited at the respective λmax) of 1a,b,e,f,g,h in toluene
ingly, the tetrabromo derivative 1f also had red-shifted
absorption and emission profiles and the substituent did not
result in a pronounced quenching of the fluorescence (entry
5).14
In addition the absorbance spectra showed only a small
sensitivity to solvent polarity. For example, the λmax abs of
1g in DMF is only red-shifted by 5 nm when compared to
761 nm in cyclohexane (Table 2). Inspection of fluorescence
maxima for 1g and 1h revealed a small blue shift trend in
Supporting Information Available: Experimental pro-
cedures and characterization data for the new compounds
reported. This material is available free of charge via the
Internet at http://pubs.acs.org.
OL8018506
4774
Org. Lett., Vol. 10, No. 21, 2008