D. L. Carlton et al. / Bioorg. Med. Chem. Lett. 18 (2008) 5451–5455
5455
wrong orientation for receptor activation (vide infra). This implies
that one of the two possible gauche rotamers is the active con-
former. In addition, the amine linker analog 1j is not a BRS-3 ago-
nist. The positive charge at physiological pH is likely not accepted
by the protein. In contrast, the reverse ether analog 1k
(EC50 = 510 nM, %Max = 71%) is an equipotent BRS-3 agonist as
the thioether 1h. Likewise, the carbon linked derivatives 1l
(EC50 = 210 nM, %Max = 82%) and 1n (EC50 = 350 nM, %Max = 83%)
exhibit similar potency to the thioether 1h. Furthermore, analog
1n shows that carbon substitution of the linker is permissible as
well. In contrast, similar to the amide derivative 1i, the trans olefin
1m is inactive, further supporting the hypothesis that an anti rot-
amer population is not the preferred conformation for efficacy.
With two potential linker replacements with perceived greater
metabolic stability identified, focus shifted to exploration of the
benzimidazole pharmacophore. Benzimidazole replacements were
synthesized as shown in Scheme 5. The commercially available
benzoxazoles 10a (X = O, Y = N) and 10c (X = N, Y = O) and benz-
thiazoles 10b (X = S, Y = N) and 10d (X = N, Y = S) were alkylated
with the chloride 3f to give the carbon linked derivatives 1o–1r.
As shown in Table 1, both benzimidazole nitrogens are abso-
lutely required for agonist activity as replacement of either one
of them with oxygen or sulfur, as in analogs 1o-1r, destroys all ago-
nist activity. It is possible that a positive charge on the benzimid-
helped improve metabolic stability, eliminating the omeprazole
rearrangement liability and removing the proton pump inhibition
liability. Finally, modifications to the benzimidazole revealed the
importance of the NH for hydrogen bond donation and showed that
the chloride and trifluoromethane analogs 1s and 1t were also sub-
micromolar BRS-3 agonists. These BRS-3 modulators may prove use-
ful in further defining the physiological roles of BRS-3.
References and notes
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H.; Jensen, R. T. J. Biol. Chem. 1998, 273, 13613.
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9. Yamada, K.; Wada, E.; Imaki, J.; Ohki-Hamazaki, H.; Wada, K. Physiol. Behav.
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azole is necessary for receptor activation, but with only
a
moderate basicity (calculated pKa = ꢁ5.9), it is likely that the benz-
imidazole is not charged. Furthermore, analog 1j (calculated
pKa = ꢁ7.4) was not an agonist despite the ability to delocalize its
charge to either ring nitrogen. Therefore, it seems more likely that
a hydrogen bond donor is required for agonist activity and the
benzimidazole NH fulfills this requirement.
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In contrast to benzimidazole replacement, substitution of the
methoxy group with small lipophilic moieties was permissible.
Both the chloro and trifluoromethyl derivatives 1s (EC50 = 570 nM,
%Max = 59%) and 1t (EC50 = 240 nM, %Max = 69%) were equipotent
BRS-3 agonists as the methoxy analog 1k. Larger substituents, like
the phenoxy group in derivative 1v, have no measured activation
and if able to bind likely disturb the receptor conformation, pre-
venting its recruitment of G proteins for signal transduction. Fur-
thermore, substitution of the 6-position of the benzimidazole
ring, as in analog 1u, also abolished agonist activity (compare 1s
with 1u). Representative BRS-3 analogs were profiled versus
NMB-R (BB1)25 and GRP-R (BB2),26 but none of them exhibited
any agonist efficacy as measured by intracellular calcium mobiliza-
tion in a FLIPR-based assay. Although a homology receptor model
of BRS-3, based on the principles of comparative protein modelling,
using the X-ray crystal structure of the seven transmembrane
receptor bovine rhodopsin, was developed, its predictions did not
prove fruitful for further target design. Nor did it provide any dee-
per understanding of the structure/activity relationships of these
analogs.
A representative BRS-3 agonist 1k was dosed i.v. in fasted rats
to ascertain its pharmacokinetic properties. It exhibited a moder-
ate volume of distribution (VSS = 1200 mL/kg) with a short terminal
half-life (t1/2 = 30 min) and a high clearance (Cl = 61 mL/min/kg)
that approached hepatic blood flow. Although these inhibitors con-
form to Lipinski’s Rule of 5 for good bioavailability, analog 1k was
not dosed orally, because of its poor i.v. exposure.
In summary, a directed screeningapproach identified a weak par-
tial BRS-3 agonist, the proton pump inhibitor omeprazole 1a.
Replacements of the pyridine fragment with various groups led to
the identification of a 1,3-benzodioxole submicromolar BRS-3 ago-
nist 1h. Further modifications to the linker region, as in 1k and 1l,
16. Mantey, S. A.; Weber, H. C.; Sainz, E.; Akeson, M.; Ryan, R. R.; Pradhan, T. K.;
Searles, R. P.; Spindel, E. R.; Battey, J. F.; Coy, D. H.; Jensen, R. T. J. Biol. Chem.
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W.; Hocart, S. J.; Jensen, R. T. J. Biol. Chem. 2001, 276, 9219.
19. Mantey, S. A.; Coy, D. H.; Entsuah, L. K.; Jensen, R. T. J. Pharmacol. Exp. Ther.
2004, 310, 1161.
20. Boyle, R. G.; Humphries, J.; Mitchell, T.; Showell, G. A.; Apaya, R.; Iijima, H.;
Shimada, H.; Arai, T.; Ueno, H.; Usui, Y.; Sakaki, T.; Wada, E.; Wada, K. J. Pept.
Sci. 2005, 11, 136.
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Sci. 2002, 8, 461.
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Gastroenterol. 2001, 36, 1011.
24. Lindberg, P.; Nordberg, P.; Alminger, T.; Brandstrom, A.; Wallmark, B. J. Med.
Chem. 1986, 29, 1327.
25. Activation of BB1 in recombinant BacMam Baculovirus transduced HEK 293
cells grown in EMEM media supplemented with 10% fetal calf serum, 2 nM L-
glutamine, and 1% non-essential amino acids at 37 °C, 5% CO2, and 95%
humidity for 24 h. Growth media is removed via aspiration and replaced with
HBSS media containing 2.5 mM probenicid and 0.1% bovine serum albumin (w/
v) and FLIPR dye. The assay is initiated by the measurement of a background
reading, followed by the addition of the test compound. Activation induced by
the test compound is recorded for 2 min. The data points are fitted to a curve
using non-linear regression analysis. The EC50 values are the mean of at least
two assays. D-Phe-Gln-Trp-Ala-Val-b-Ala-His-Phe-Nle-NH2 had an EC50 = 0.55
nM in this assay.
26. Activation of BB2 in recombinant BacMam Baculovirus transduced HEK 293
cells grown in EMEM media supplemented with 10% fetal calf serum, 2 nM L-
glutamine, and 1% non-essential amino acids at 37 °C, 5% CO2, and 95%
humidity for 24 h. Growth media is removed via aspiration and replaced with
HBSS media containing 2.5 mM probenicid and 0.1% bovine serum albumin (w/
v) and FLIPR dye. The assay is initiated by the measurement of a background
reading, followed by the addition of the test compound. Activation induced by
the test compound is recorded for 2 min. The data points are fitted to a curve
using non-linear regression analysis. The EC50 values are the mean of at least
two assays.
D-Phe-Gln-Trp-Ala-Val-b-Ala-His-Phe-Nle-NH2 had an EC50 =
0.060 nM in this assay.