H. Kargar, F. Aghaei-Meybodi, R. Behjatmanesh-Ardakani et al.
Journal of Molecular Structure 1230 (2021) 129908
Table 1
2.3. Syntheses of the copper(II) complexes
Crystal data and structure refinement parameters for HL4 and C2 compounds.
Identification code
HL4
C2
In order to synthesize the copper(II) complexes [Cu(Ln)2] (C1–
C4), where Ln=L1–L4 are bidentate Schiff base ligands (HLn), the
metal precursor Cu(OAc)2.H2O (0.200 g, 1 mmol) was added to
a hot methanolic solution (30 mL) of the corresponding ligand
HLn (0.675 g, 2.0 mmol) the resultant mixture was refluxed for
3 h and then the precipitates were filtered off, washed thoroughly
with methanol and dried in air. Black green crystals of C2 suitable
for X-ray measurements were obtained from methanol solution by
slow evaporation. The synthesis of the complexes is illustrated in
Chemical formula
Formula weight
Temperature (K)
C
19H19N3O3
C38H36CuN6O6
736.27
337.37
296
296
˚
Wavelength (A)
0.71073
Monoclinic
P21/c
0.71073
Triclinic
¯
P1
Crystal system
Space group
˚
a (A)
6.8913(4)
28.3676(19)
9.3850(8)
90
10.7079(4)
13.0362(5)
14.4214(8)
105.975(2)
102.344(1)
110.267(2)
1705.55(13)
2
˚
b (A)
˚
c (A)
α (°)
β (°)
γ (°)
119.451(7)
90
C1; [Cu(L1)2], Yield: 81%. Calculated for C38H36CuN6O6: C 61.99,
3
H 4.93, N 11.41%. Analysis found: C 61.87, H 4.97, N 11.52. IR (KBr,
˚
Volume (A )
1715.7(2)
4
cm−1): ν (C = O) 1658, 1604 ν (C = N) 1587, ν (C O) 1215.
–
Z
Calculated Density (Mg/m3)
Absorption coefficient (mm−1
F(000)
1.306
1.434
C2; [Cu(L2)2], Yield: 78%. Calculated for C38H36CuN6O6: C 61.99,
)
0.09
0.70
H 4.93, N 11.41%. Analysis found: C 62.07, H 4.86, N 11.37. IR (KBr,
712
766
cm−1): ν (C = O) 1658, 1610 ν (C = N) 1587, ν (C O) 1247.
–
Crystal Shape
Prism
Prism
C3; [Cu(L3)2], Yield: 73%. Calculated for C38H36CuN6O6: C 61.99,
Crystal color
Yellow
0.32 × 0.23 × 0.22
Black green
0.34 × 0.27 × 0.25
Crystal size (mm)
Data Collection
Diffractometer
H 4.93, N 11.41%. Analysis found: C 62.05, H 4.98, N 11.47. IR (KBr,
cm−1): ν (C = O) 1656, 1622 ν (C = N) 1579, ν (C O) 1249.
–
Bruker KAPPA
APEXII CCD
Bruker KAPPA
APEXII CCD
C4; [Cu(L4)2], Yield: 69%. Calculated for C38H36CuN6O6: C 61.99,
H 4.93, N 11.41%. Analysis found: C 61.88, H 4.95, N 11.45. IR (KBr,
Diffractometer
multi-scan
diffractometer
multi-scan
cm−1): ν (C = O) 1664, 1608 ν (C = N) 1572, ν (C O) 1246.
–
Absorption correction
(SADABS; Bruker,
2007)
(SADABS; Bruker,
2007)
2.4. Computational methods
No. of measured, independent
and observed [I> 2s(I)]
reflections
14,661, 3728, 2564
26,861, 7432, 6320
Theoretical calculations involving geometry optimization in the
gas and solution phases, vibrational frequencies, and NMR chemi-
cal shifts of ligands and complexes were performed with the Gaus-
sian 09 package [30] at B3LYP level of theory [31]. The solution
phase was modeled by using IEFPCM with considering the solvent
[32]. The standard Def2-SVPD and Def2-SV(P) basis set [33] were
used for ligands and complexes, respectively. Geometry optimiza-
tions were tested by frequency analysis to be sure that they are in
the local minimum of potential energy surface (PES). The results
showed no imaginary frequency. The 1H and 13C NMR magnetic
isotropic shielding tensors were calculated by the standard Gauge-
Independent Atomic Orbital (GIAO) approach in the solution phase
[34]. Chemical shift values of HL1_HL4 ligands are calculated by us-
ing B3LYP/Def2-SVPD level and IEFPCM model as implicit model of
solvent and compared with experimental data in chloroform. The
same solvent was used for all IEFPCM calculations for ligands, com-
plexes and TMS. Chemical shifts were calculated by subtracting the
appropriate isotopic part of the shielding tensor from that of TMS
δi = σTMS - σi. The isotropic shielding constants for TMS calcu-
lated in the solution phase at the B3LYP/Def2-SVPD level of theory
were equal to 31.54 ppm and 188.22 ppm for the 1H nuclei and
the 13C nuclei, respectively.
Rint
0.029
0.027
Theta range for data collection
Index ranges
2.429° to 26.998°
−8 ≤ h ≤ 8, −36≤
k ≤ 36, −11≤
l ≤ 10
1.563° to 26.999°
−13≤ h ≤ 13,
−16≤ k ≤ 16,
−18≤ l ≤ 18
0.639
−1
˚
(sin θ/λ)max (A
)
0.639
Refinement
R[F2> 2σ(F2)], wR(F2), S
0.046, 0.129, 1.04
3728
0.035, 0.101, 1.03
7432
No. of reflections
No. of parameters
H-atom treatment
230
466
H-atom parameters
constrained
0.23, −0.20
H-atom parameters
constrained
0.31, −0.38
−3
˚
ꢀρmax, ꢀρmin (e A
)
106.48; 114.09; 116.66; 124.41; 127.11; 129.27; 133.27; 134.50;
149.41; 160.36; 160.53; 162.67; 162.94.
HL3;
(E)−4-[(2–hydroxy-5-methoxybenzylidene)amino]−1,5-
Yield: 81%.
dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one,
Calculated for C19 H19N3O3: C 67.64, H 5.68, N 12.46%. Analysis
found: C 67.75, H 5.72, N 12.51. IR (KBr, cm−1): ν (C = O) 1653,
ν (C = N) 1573, ν (C O) 1132. 1H NMR (CDCl3, 400 MHz, 298 K)
–
–
–
δ/ppm: 2.43 (s, 3H, –CH3 C); 3.20 (s, 3H,–CH3 N); 3.78 (s, 3H,
–
–CH3 O); 6.88–6.91 (br, 3H, Ha, Hb, Hc); 7.34–7.53 (m, 5H, an-
tipyrine ring); 9.82 (s, –CH N, Hi); 13.87 (s, –OH, Hp). 13C NMR
2.5. Crystallographic methods
=
(CDCl3, 100 MHz, 298 K) δ/ppm: 10.31; 35.67; 55.84; 114.95;
116.31; 117.47; 119.20; 119.91; 124.62; 127.32; 129.32; 129.36;
134.33; 149.94; 152.28; 154.63; 160.31.
The X-ray diffraction measurement of HL4 and C2 compounds
were carried out on Bruker Kappa APEXII CCD X-ray diffractometer
HL4;
(E)−4-[(2–hydroxy-5-methoxybenzylidene)amino]−1,5-
Yield: 76%.
with graphite monochromated Mo-Kα radiation (λ = 0.71073 A).
˚
dimethyl-2-phenyl-1,2-dihydro-3H-pyrazol-3-one,
The yellow and black green single crystals of HL4 and C2 suit-
able for X-ray analysis were obtained from methanol solution and
mounted on a glass fiber for data collection on Bruker Apex-
II software [35]. The structures were solved by direct methods
and subsequent difference fourier maps on SHELXS97 [36] and
then refined on F2 by a full-matrix least-squares procedure us-
ing anisotropic displacement parameters. Atomic factors are from
the international tables for X-ray Crystallography [37]. All non-
hydrogen atoms were refined with anisotropic displacement pa-
rameters. Hydrogen atoms were placed in ideal positions and re-
fined as riding atoms with relative isotropic displacement parame-
Calculated for C19 H19N3O3: C 67.64, H 5.68, N 12.46%. Analysis
found: C 67.60, H 5.70, N 12.50. IR (KBr, cm−1): ν (C = O) 1639,
ν (C = N) 1595, ν (C O) 1136. 1H NMR (CDCl3, 400 MHz, 298 K)
–
–
–
δ/ppm: 2.42 (s, 3H, –CH3 C); 3.18 (s, 3H,–CH3 N); 3.84 (s, 3H,
3
3
–
–CH3 O); 6.37 (d, J = 8.3 Hz, Hc); 6.56 (d, J = 8.3 Hz, Ha);
3
7.23 (t, J = 8.3 Hz, Hb); 7.32–7.52 (m, 5H, antipyrine ring); 10.22
(s, –CH N, Hi); 14.24 (s, –OH, Hp). 13C NMR (CDCl3, 100 MHz,
=
298 K) δ/ppm: 10.34; 35.83; 55.62; 100.62; 109.51; 109.74; 116.99;
124.41; 127.07; 129.24; 132.90; 134.53; 149.67; 157.25; 160.04;
160.39; 162.29.
3