
ACS Medicinal Chemistry Letters p. 2389 - 2396 (2020)
Update date:2022-07-29
Topics:
Beveridge, Ramsay E.
Wallweber, Heidi Ackerly
Ashkenazi, Avi
Beresini, Maureen
Clark, Kevin R.
Gibbons, Paul
Ghiro, Elise
Kaufman, Susan
Larivée, Alexandre
Leblanc, Melissa
Leclerc, Jean-Philippe
Lemire, Alexandre
Ly, Cuong
Rudolph, Joachim
Schwarz, Jacob B.
Srivastava, Sanjay
Wang, Weiru
Zhao, Liang
Braun, Marie-Gabrielle
Amino-quinazoline BRaf kinase inhibitor 2 was identified from a library screen as a modest inhibitor of the unfolded protein response (UPR) regulating potential anticancer target IRE1α. A combination of crystallographic and conformational considerations were used to guide structure-based attenuation of BRaf activity and optimization of IRE1α potency. Quinazoline 6-position modifications were found to provide up to 100-fold improvement in IRE1α cellular potency but were ineffective at reducing BRaf activity. A salt bridge contact with Glu651 in IRE1α was then targeted to build in selectivity over BRaf which instead possesses a histidine in this position (His539). Torsional angle analysis revealed that the quinazoline hinge binder core was ill-suited to accommodate the required conformation to effectively reach Glu651, prompting a change to the thienopyrimidine hinge binder. Resulting analogues such as 25 demonstrated good IRE1α cellular potency and imparted more than 1000-fold decrease in BRaf activity.
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