414
G. Agelis et al.
CD3OD): d (ppm) 168.14, 137.43, 135.25, 134.35, 124.0,
114.35, 50.61. All data were consistent with literature
(Pirrung and Pei 2000).
furnished pure 11a as a white foam (0.49 g, 80%). Com-
pounds 11b–c were prepared by a similar procedure.
Data for compound 11a: ESI–MS (m/z): 313.30
(M ? H?); HRMS-ESI (m/z): [M ? H]? calcd for
C15H17N6O2, 313.1413; found, 313.1401; 1H MMR
(400 MHz, CD3OD): d 8.54 (s, 1H), 7.99–7.97 (m, 1H),
7.66–7.61 (m, 2H), 7.40–7.38 (m, 1H), 7.35 (s, 1H), 5.80 (s,
2H), 3.65 (s, 3H), 2.93 (t, 2H, J = 7.2 Hz), 2.69 (t, 2H,
J = 7.2 Hz); 13C NMR (100 MHz, CD3OD): d (ppm)
172.72, 157.78, 135.35, 134.87, 132.17, 131.30, 130.54,
130.26, 129.97, 126.19, 117.24, 51.37, 49.24, 31.26, 18.88;
Anal. Calcd for C17H17F3N6O4: C, 47.89, H, 4.02, N, 19.71.
Found: C, 47.96, H, 4.11, N, 19.62.
Methyl 3-(imidazol-4-yl)propionate 8
A solution of 7 (1 g, 6.58 mmol) in MeOH (10 mL) was
introduced in a hydrogenation flask and 0.10 g of Pd–C
(10%) was added as catalyst. The mixture was stirred under
H2 for 8 h at RT and after completion of the reaction, the
catalyst was filtered through a pad of Celite and the filtrate
was concentrated in vacuo to furnish a white solid 8 (0.96 g,
95%) which showed adequate purity for the next step.
Data for compound 8: mp 95–97°C; ESI–MS (m/z):
155.41 (M ? H?); 1H MMR (400 MHz, CD3OD): d (ppm)
7.58 (s, 1H), 6.81 (s, 1H), 3.66 (s, 3H), 2.88 (t, 2H,
J = 7.2 Hz), 2.66 (t, 2H, J = 7.2 Hz); 13C NMR (100 MHz,
CD3OD): d (ppm) 173.59, 135.96, 134.53, 115.75, 50.67,
33.27, 21.76. All data were consistent with literature (Pir-
rung and Pei 2000).
Data for compound 11b: ESI–MS (m/z): 313.30
(M ? H?); HRMS-ESI (m/z): [M ? H]? calcd for
C15H17N6O2, 313.1413; found, 313.1403; 1H MMR
(400 MHz, CD3OD): d (ppm) 8.99 (s, 1H), 8.04 (d, 1H,
J = 7.8 Hz), 7.94 (s, 1H), 7.64 (t, 1H, J = 7.8 Hz), 7.50 (d,
1H, J = 7.8 Hz), 7.42 (s, 1H), 5.60 (s, 2H), 3.60 (s, 3H), 2.93
(t, 2H, J = 7.2 Hz), 2.64 (t, 2H, J = 7.2 Hz); 13C NMR
(100 MHz, CD3OD): d(ppm) 172.70, 157.65, 135.90, 135.60,
134.65, 130.44, 129.98, 127.46, 127.13, 126.09, 117.95,
51.34, 49.88, 31.32, 18.84; Anal. Calcd for C17H17F3N6O4: C,
47.89, H, 4.02, N, 19.71. Found: C, 47.81, H, 4.19, N, 19.57.
Data for compound 11c: ESI–MS (m/z): 313.45 (M ? H?);
HRMS-ESI (m/z): [M ? H]? calcd for C15H17N6O2, 313.1413;
found, 313.1406; 1H MMR (400 MHz, CD3OD): d (ppm) 8.98
(s, 1H), 8.09 (d, 2H, J = 8.2 Hz), 7.48 (d, 2H, J = 8.2 Hz),
7.42 (s, 1H), 5.59 (s, 2H), 3.63 (s, 3H), 2.91 (t, 2H, J = 7.2 Hz),
2.66 (t, 2H, J = 7.2 Hz); 13C NMR (100 MHz, CD3OD): d
(ppm) 172.32, 157.67, 136.68, 135.49, 134.27,128.17, 127.62,
125.72, 117.47, 50.97, 49.42, 30.86, 18.42; Anal. Calcd for
C17H17F3N6O4: C, 47.89, H, 4.02, N, 19.71. Found: C, 47.92,
H, 3.95, N, 19.86.
Methyl 3-(1-tritylimidazol-4-yl)propionate 9
To a solution of compound 8 (1.0 g, 6.53 mmol) in DCM
(7 mL) were added TEA (1.80 mL, 13.06 mmol), TrtCl
(2.0 g, 7.18 mmol) and the resulting solution was stirred at
RT for 2 h. The mixture was diluted with DCM, washed
successively with 5% w/v NaHCO3 (93), H2O (92), dried
over Na2SO4 and concentrated. Recrystallization from DIE
afforded 9 (2.25 g, 87%) as a white solid.
Data for compound 9: mp 142–143°C; ESI–MS (m/z):
1
397.33 (M ? H?); H MMR (400 MHz, CDCl3): d (ppm)
8.02 (s, 1H), 7.42–7.08 (m, 15H), 6.75 (s, 1H), 3.62 (s, 3H),
3.07 (t, 2H, J = 7.2 Hz), 2.85 (t, 2H, J = 7.2 Hz); 13C
NMR (100 MHz, CDCl3): d (ppm) 173.05, 141.10, 136.45,
129.94, 129.16, 128.86, 128.86, 128.29, 84.33, 51.97,
33.42, 22.06. All data of compounds were consistent with
literature (Pirrung and Pei 2000).
Molecular modelling
Molecular dynamics and minimization
General synthesis of alkylated compounds 11a–c
All computer calculations were performed on a Pentium IV
workstation equipped with a 2.14 GHz processor using
Discovery Studio version 2.0 molecular modelling systems
by Accelrys Software Inc. (San Diego, CA, USA). The
molecular modelling procedure included Energy Minimi-
zation (using the algorithms Steepest Descents for 9000
iterations and Conjugate Gradient for 9000 iterations)
using the CHARMm force field. Dielectric constant was set
to 45 for better simulation of the receptor environment
during all the experiments as well as the SHAKE algorithm
To a solution of 9 (1.0 g, 2.53 mmol) in dry DCM (7 mL),
alkyl bromide 5a (1.46 g, 3.04 mmol) was added under N2
atmosphere and the reaction was allowed to proceed for
48 h at RT. The mixture was concentrated in vacuo and
trituration with DEE afforded 10a as a yellow solid
(1.32 g, 60%), used as obtained for the next step. A solu-
tion of 10a (1.0 g, 1.14 mmol) in 2 mL TFA/DCM (1:1) in
the presence of TES (0.15 mL, 1 mmol) was stirred at RT
and after 1 h the solvent was concentrated. Trituration with
DEE afforded a yellow solid, followed by purification with
preparative RP-HPLC (5% acetonitrile to 90% acetonitrile
in 50 min with a flow rate of 9 mL/min) and lyophilization
˚
and RMSD 0.001 A as energy convergence criterion. MD
runs of EXP3174 and analogues 11a–c, were performed
using the CHARMm force field as follows: Heating, from
0–300 K gradually, and Equilibration were set with a time
123