J. L. Bell et al. / Bioorg. Med. Chem. Lett. 23 (2013) 3826–3832
3829
Table 2
Effects of ring B substitution on transcription and cytotoxicity in transfected PC-3 cellsa
O
O
F3C
N
N
H
R2
CF3
12
M)
Compd no.
R2
IC50 SRE.L (
l
% Inh SRE.L (100
lM)
% Inh WST-1 (100 lM)
2
4-Cl
PhO
PhCH2
2-Pyr-CH2CH2O
Pyrrolidin-1-yl-SO2
2-Me-thiazol-4-yl
Et
CH2@CH
Oxazol-5-yl
MeS
MeO2C
MeO
–CN
Morpholin-1-yl-CH2
–NO2
MeCO
Pyrrolidin-1-yl-CH2
2-CO2Me-furan-4-yl
CH2@CHCH2O
PhCO
4-Methyl-1,2,4-triazol-3-yl
2-Oxopyrrolidin-1-yl
3-Cl-4-CF3-pyridin-2-yl-O
tBuO2C
9.8
1.5
1.6
2.3
5.6
6.1
8.1
11
12
12
26
30
32
32
66
76
ND
ND
ND
ND
ND
ND
ND
ND
78
59
59
82
70
73
66
53
87
60
63
51
77
73
65
73
94
39
38
38
36
35
25
24
14
1
0
5
0
1
0
1
9
0
0
0
0
0
9
0
51
0
0
0
0
0
0
0
12a
12b
12c
12d
12e
12f
12g
12h
12i
12j
12k
12l
12m
12n
12o
12p
12q
12r
12s
12t
12u
12v
12w
a
Assays and abbreviations defined in Table 1.
multiple binding modes. Overall, however, it must be emphasized
that any interpretation of SAR needs to be undertaken with the ca-
veat that activity in the cell-based SRE.L assay will be dependent
on multiple variables in addition to intrinsic activity, including cell
permeability, distribution inside the cell, and perhaps even
metabolism.
only realized with the most lipophilic analogs 12a and 12b, which
may account for their increased potency in the cell-based SRE-luc as-
say. One interesting observation from this dataset is that the supe-
rior activity of conformationally restrained analog 2 versus acyclic
analog 19 (Fig. 1, IC50 = 38 l
M)13 is likely not due to increased pas-
sive permeability and therefore probably reflects a true increase in
Based on the results from the acid- and aniline-substituted li-
braries, additional analogs were examined, as illustrated in Table 3.
Replacement of the furan of 8a with a thiophene (8u) slightly in-
creased potency, but introduced some detectable cytotoxicity.
Movement of the furan of 8a from the meta- to the para-position
(13) caused a loss in potency with introduction of slight cytotoxic-
ity. 12x moved the furan from ring A to ring B, which led to a loss of
both potency and efficacy. Compounds 12y and 12z shortened the
pyridyl tether of 12c by one and two carbons, respectively. Both
had inferior potency. Analogs 15 and 16 were prepared to deter-
mine if a pyridine B-ring could improve the solubility of 2. Unfor-
tunately all showed unacceptable losses in potency.
Next, we examined ‘hybrid’ analogs 17 and 18 of our most
promising compounds, combining the A-ring furan moiety of 8a
with the B-ring moieties of 12a and 12b. Surprisingly, neither hy-
brid retained any activity. To determine if this reflects a steric
intolerance for aromatic substitution on both rings, we prepared
hybrid 14 containing the B-ring thioether of 12i. In this case activ-
ity was not lost, but there also was no improvement.
A small subset of compounds was selected for evaluation of the
impact of structure on kinetic solubility17 and passive permeability
as measured by the PAMPA Explorer Kit (pION) (Table 4). For each
parameter, compounds were binned into one of three groups: high,
medium or low (described in Table 4 legend). Unfortunately none of
the new analogs had solubilities exceeding that of leads 1 or 2; all
were binned Low solubility. Marginal improvement in permeability
was observed with furan analog 8a relative to 2, but it did not rise
above the low bin. Significant improvements in permeability were
affinity for the target.
We previously demonstrated that 2 can inhibit invasion into
Matrigel by cultured PC-3 cells.13 To compare our best new analogs
with 2 for their ability to inhibit PC-3 cell migration, we employed
a scratch wound assay. PC-3 cells (5.0 Â 105) were plated in DMEM
containing 10% FBS and grown to confluence in a 12-well plate.
After 24 h, a scratch was made using a 200
was replaced with DMEM containing 0.5% FBS and either test com-
pounds (10 M) or 0.1% DMSO control. Images of the wounds were
lL pipette tip. Medium
l
taken at 0 h using a bright-field inverted microscope (Leica DM
IRB) at 2.5Â magnification. After 24 h the cells were fixed (10% for-
malin) and stained (0.5% crystal violet) to obtain high contrast
images. Area quantification of the wounds was determined compu-
tationally using ImageJÒ software (NIH). The extent of migration
was determined by subtracting the area of the wound after 24 h
from the initial area of the wound. The percent inhibition was plot-
ted by normalizing the compound treated cells to the DMSO con-
trol. Results are summarized in Fig. 2. In this assay, lead
compound 2 only inhibited PC-3 cell migration by 22%. Acyclic
analog 19 was included as a negative control with poor SRE.L activ-
ity, and showed minimal (<10%) inhibition of migration. Surpris-
ingly, none of the most potent new B-ring analogs (12a–d)
performed significantly better than 2 in the scratch assay, all inhib-
iting less than 30% at 10 lM. In fact, the only B-ring analog that
afforded any improvement was thiazole 12e (42% inhibition). On
the other hand, A-ring analogs 8a and 8u, despite their more mod-
est SRE.L potency, were much more effective in this migration as-
say, both inhibiting about 70% at 10 lM. Dose response curves