ACS Medicinal Chemistry Letters
Letter
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The adjacent carbonyl linker is forming an intramolecular
hydrogen bond with the hydroxyl group of the pyridinone ring.
The presence of this internal hydrogen bond is supported by
two observations. In solution, ilicicolin H forms six-center
hydrogen bond as confirmed by the NMR spectrum (data not
shown). More importantly, compound 9, the pyrazole
analogue, with locked conformation similar to those with
intramolecular hydrogen bond, is active in the fungal
cytochrome c1 reductase assay (Table S4 in the Supporting
Information).
The highly twisted nature of the proposed bioactive
conformation has important implications for SAR. The binding
mode further suggests that the phenolic group of the hydroxy
phenyl makes a hydrogen bond interaction with N31 side chain,
which is likely to be responsible for the specificity of ilicicolin's
binding. The crystal structure of antimycin complex suggests
that D229 makes critical hydrogen bonds. As already
mentioned above, we do not observe this interaction since it
would only be accessible to ilicicolin H analogues with hydroxy
substitution in the ortho or meta position. The model also
allows us to speculate about the loss of activity of ilicicolin H in
G37 mutants. Mutations of that residue will increase the bulk in
that region and cause a steric clash with ilicicolin H. The tight
packing of ilicicolin H relative to G37 in the pocket is illustrated
in Figure 2B.
Ilicicolin H is a natural product produced by an imperfect
fungus, C. ilicicola and G. roseum, which showed broad spectrum
antifungal activity. It imparts its activity by selectively inhibiting
fungal cytochrome c1 oxidoreductase activity and respiration. It
demonstrated modest in vivo activity in a Candida and
Cryptococcus infection mouse model. The in vivo activity was
limited by high plasma protein binding. Preliminary medicinal
chemistry efforts pointed out the criticality of the β-diketone
feature of the molecule and lead to mostly less active or inactive
compounds. The homology model suggests that its binding
mode has some similarities but also differences relative to
antimycin binding and provides valuable insight to SAR and
fungal specificity. These studies open the window for future
work on ilicicolin H and the development of new modes of
action antifungal agents.
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ASSOCIATED CONTENT
* Supporting Information
■
S
Experimental procedure for bioassays and mutation data. This
material is available free of charge via the Internet at http://
AUTHOR INFORMATION
Corresponding Author
■
Author Contributions
The manuscript was written through contributions of all
authors. All authors have given approval to the final version of
the manuscript.
Notes
The authors declare no competing financial interest.
†Deceased.
REFERENCES
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(1) Hof, H. Will resistance in fungi emerge on a scale similar to that
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dx.doi.org/10.1021/ml300173e | ACS Med. Chem. Lett. 2012, 3, 814−817