Evaluation of pseudopteroxazole and pseudopterosin derivatives against Mycobacterium tuberculosis and other pathogens

Article abstract of DOI:10.3390/md10081711

Pseudopterosins and pseudopteroxazole are intriguing marine natural products that possess notable antimicrobial activity with a commensurate lack of cytotoxicity. New semi-synthetic pseudopteroxazoles, pseudopteroquinoxalines and pseudopterosin congeners along with simple synthetic mimics of the terpene skeleton were synthesized. In order to build structure-activity relationships, a set of 29 new and previously reported compounds was assessed for in vitro antimicrobial and cytotoxic activities. A number of congeners exhibited antimicrobial activity against a range of Gram-positive bacteria including Mycobacterium tuberculosis H₃₇Rv, with four displaying notable antitubercular activity against both replicating and non-replicating persistent forms of M. tuberculosis. One new semi-synthetic compound, 21-((1H-imidazol-5- yl)methyl)-pseudopteroxazole (7a), was more potent than the natural products pseudopterosin and pseudopteroxazole and exhibited equipotent activity against both replicating and non-replicating persistent forms of M. tuberculosis with a near absence of in vitro cytotoxicity. Pseudopteroxazole also exhibited activity against strains of M. tuberculosis H₃₇Rv resistant to six clinically used antibiotics.

Full text of DOI:10.3390/md10081711

Mar. Drugs 2012, 10, 1711-1728; doi:10.3390/md10081711
OPEN ACCESS
Marine Drugs
ISSN 1660-3397
www.mdpi.com/journal/marinedrugs
Article
Evaluation of Pseudopteroxazole and Pseudopterosin
Derivatives against Mycobacterium tuberculosis and
Other Pathogens
Malcolm W. B. McCulloch 1, Brad Haltli 1,2, Douglas H. Marchbank 1 and Russell G. Kerr 1,2,
*
1
Department of Chemistry and Department of Biomedical Sciences, Atlantic Veterinary College,
University of Prince Edward Island, Charlottetown, PEI C1A 4P3, Canada;
E-Mails: mmcculloch@upei.ca (M.W.B.M.); bhaltli@upei.ca (B.H.); dmarchbank@upei.ca (D.H.M.)
Nautilus Biosciences Canada, Inc., Charlottetown, PEI C1A 4P3, Canada
2
* Author to whom correspondence should be addressed; E-Mail: rkerr@upei.ca;
Tel.: +1-902-566-0565; Fax: +1-902-566-7445.
Received: 12 June 2012; in revised form: 25 July 2012 / Accepted: 1 August 2012 /
Published: 15 August 2012
Abstract: Pseudopterosins and pseudopteroxazole are intriguing marine natural products
that possess notable antimicrobial activity with a commensurate lack of cytotoxicity. New
semi-synthetic pseudopteroxazoles, pseudopteroquinoxalines and pseudopterosin congeners
along with simple synthetic mimics of the terpene skeleton were synthesized. In order to
build structure-activity relationships, a set of 29 new and previously reported compounds
was assessed for in vitro antimicrobial and cytotoxic activities. A number of congeners
exhibited antimicrobial activity against a range of Gram-positive bacteria including
Mycobacterium tuberculosis H37Rv, with four displaying notable antitubercular activity
against both replicating and non-replicating persistent forms of M. tuberculosis. One new
semi-synthetic compound, 21-((1H-imidazol-5-yl)methyl)-pseudopteroxazole (7a), was
more potent than the natural products pseudopterosin and pseudopteroxazole and exhibited
equipotent activity against both replicating and non-replicating persistent forms of
M. tuberculosis with a near absence of in vitro cytotoxicity. Pseudopteroxazole also
exhibited activity against strains of M. tuberculosis H37Rv resistant to six clinically
used antibiotics.
Keywords:
pseudopteroxazoles;
semi-synthesis;
Mycobacterium
tuberculosis;
antibiotic-resistance

Mar. Drugs 2012, 10
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1. Introduction
Mycobacterium tuberculosis is the causative agent of tuberculosis (TB), a disease which remains a
serious threat to the global human population, causing nearly 2 million deaths and over 9 million new
infections annually [1]. While the majority of TB patients can be cured using existing antibiotic
treatment regimens, several challenges still exist for the treatment of TB. A key drawback to current
therapies is the lengthy duration (6–9 months) required to ensure complete eradication of the disease.
The long duration and associated toxicity result in poor patient compliance which contributes to the
spread of TB and selects for drug-resistant forms of the disease. The need for extended TB treatment
regimens is in large part due to the resistance of non-replicating persistent (NRP) subpopulations of
M. tuberculosis to antibiotic treatment. The treatment of TB is further complicated by the increasing
occurrence of strains resistant to multiple drugs, which account for approximately 5% of TB cases [2].
To improve the outcome of existing TB treatments, new classes of molecules active against NRP-TB
and emerging drug-resistant strains are greatly needed [3,4]. Natural products represent an obvious
starting point to meet this desideratum given that they have historically provided a wealth of antibiotic
lead compounds which have been successfully developed into efficacious drugs [5].
The diterpenes pseudopteroxazole (1) and homopseudopteroxazole (2) (Figure 1) are trace marine
natural products from Pseudopterogorgia elisabethae with reported activity against Mycobacterium
tuberculosis H37Rv [6,7]. Despite interest in 1 by the synthetic chemistry community [8–10], no
medicinal chemistry efforts around this scaffold were reported until our recent semi-synthesis of 1, 2
and 14 congeners from relatively abundant natural pseudopterosins G–J (3a–3d) [11]. In this earlier
report we described activity against model mycobacteria (M. smegmatis and M. diernhoferi) and
clinically relevant Gram-positive bacteria: methicillin-resistant Staphylococcus aureus (MRSA) and
vancomycin-resistant Enterococcus faecium (VRE). The pseudopteroxazole pharmacophore is not
known, thus an aim of the current study was to conduct a preliminary examination of structure-activity
relationships (SAR), especially against M. tuberculosis H37Rv.
Figure 1. Structures of pseudopteroxazole (1), homopseudopteroxazole (2) and
pseudopterosins G–J (3a–d).
In the previous report we examined the effect of modifying the oxazole moiety in 1 by synthesizing
C-21 substituted derivatives of 1 and also by preparing isopseudopteroxazoles, which are
pseudopteroxazole congeners where the location of the oxazole nitrogen and oxygen atoms are
inverted. We found that appending lipophilic moieties to the C-21 oxazole decreased the antimicrobial
activity against model mycobacteria, MRSA and VRE, whereas isopseudopteroxazoles and their

Mar. Drugs 2012, 10
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corresponding pseudopteroxazoles exhibited similar antimicrobial activity [11]. We report herein the
in vitro activity of the aforementioned pseudopteroxazole compound set and new structurally related
compounds against M. tuberculosis H37Rv and a model of NRP-TB. Given that the pseudopterosins [12,13]
are also known to possess antibiotic activity against various Gram-positive bacteria [14–17] including
M. tuberculosis [15], we aimed to synthesize and evaluate derivatives based on the parent aglycone
scaffold of both pseudopterosins G–J and pseudopteroxazole. In this regard we have: (1) substituted
the oxazole moiety in 1 with a pyrazine to generate pseudopteroquinoxaline (5); (2) synthesized a
range of pseudopteroxazole derivatives such as 21-((1H-imidazol-5-yl)methyl)-pseudopteroxazole (7a)
and the regioisomer (7b), which are pseudopteroxazoles with polar, amphoteric imidazole side chains
that possess activity in a NRP-TB model; (3) examined the biological effect of altering the phenolic
substituents on the pseudopterosins G–J aglycone (4); and (4) synthesized small prenylated phenol
derivatives and related glycosides as mimics of the pseudopterosin/pseudopteroxazole structural core.
2. Results and Discussion
2.1. Chemistry
Pseudopteroxazoles (1, 2, 22–33) were synthesized as previously described [11]. The synthesis of
the novel compounds is discussed below.
2.1.1. Synthesis of Pseudopteroquinoxalines 5 and 6
Pseudopteroquinoxaline (5) was synthesized in one-pot by oxidation of the pseudopterosin G–J
aglycone (4) [18] with Ag2O and condensation with ethylenediamine (Scheme 1). In an alternative
synthesis, treatment of 4 with Dess-Martin periodinane in DCM/MeOH, followed by reaction with
ethylenediamine yielded 5 and the tertiary ether 6 as a minor side product.
Scheme 1. Reagents and conditions: (a) Ag2O (1.5 equiv.), NH2(CH2)2NH2, Δ, EtOH,
for 5. (b) (i) Dess-Martin periodinane (2 equiv.), NH2(CH2)2NH2, DCM/H2O/MeOH r.t.;
(ii) Δ, isopropyl alcohol, for 5 and 6.
2.1.2. Synthesis of Pseudopteroxazoles 7a and 7b
Synthesis of the novel derivatives 21-((1H-imidazol-5-yl)methyl)-pseudopteroxazole (7a) and the
regioisomer (7b) followed the previously reported general method utilizing the aglycone (4), Ag2O and
histidine (Scheme 2). After purification by flash chromatography, a mixture of 7a and 7b was obtained
1
in a 2.4:1 ratio as determined by H NMR analysis. This product regioisomer ratio differs from the

Mar. Drugs 2012, 10
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~10:1 ratio previously observed with other amino acids [11]. While the reasons behind this are under
further investigation, it is conceivable that the nucleophilic imidazole attacks the ortho-quinone at C-10,
which increases the relative rate of condensation at C-9. Separation of the regioisomers (7a/7b) proved
challenging; while HPLC did not lead to peak resolution, a portion of the material was slightly
enriched in 7a (3:1 ratio) by peak shaving. This material (7a/7b) has been thoroughly and unambiguously
characterized; spectra and analytical chromatograms are provided in the supporting information.
Scheme 2. Reagents and conditions: (a) Ag2CO3 (1.4 equiv.), Δ, MeOH/H2O (10:1);
(b) histidine (6.7 equiv. in batches), Δ; (c) HCO2H (HPLC purification).
2.1.3. Synthesis of Pseudopterosin Derivatives 8–12
The mono-pentyl ether (8) derivative of the pseudopterosin G–J aglycone (4) was synthesized to
provide a phenolic mimic of homopseudopteroxazole (2), given that 2 possesses a pentyl chain and
was reportedly active against M. tuberculosis H37Rv [7]. The mono-pentyl ether (8) and mono-methyl
ether (9) [19] were synthesized by alkylation of 3a–d with iodopentane or iodomethane, respectively,
followed by acid catalyzed hydrolysis of the fucose moiety (Scheme 3). Further substitution of the free
phenol in 9 by treatment with the appropriate electrophile yielded the di-methyl ether (10), the triflate
(11) and the carbamate (12).
Scheme 3. Reagents and conditions: (a) K2CO3, iodopentane, Δ, acetone; (b) HCl,
Δ, MeOH; (c) K2CO3, MeI, Δ acetone; (d) HCl, Δ, MeOH; (e) For 10, NaH, MeI, THF;
(f) For 11, Hunig’s base, Tf2O, DCM, 0 °C→r.t.; (g) For 12, NaH, (CH3)2NCOCl, THF.

Mar. Drugs 2012, 10
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2.1.4. Synthesis of Pseudopterosin Mimics 14–20
The syntheses of the prenylated aromatic mimics of pseudopterosin are shown in Scheme 4. Acid
catalyzed reaction of 2,6-dimethoxyphenol (13) with 2-methyl-3-buten-2-ol yielded the mono-, di- and
tri-prenylated derivatives (14, 15 & 16). Compound 13 was further utilized as a model compound to
develop conditions suitable for the glycosylation of these phenols. Treatment of 13 with the
benzoylated glycosyl donor 21 and BF3·Et2O yielded 17, which was deprotected with K2CO3 to give
the galactoside 18 in high yield. Identical reaction sequences utilizing 14 gave the benzoylated glycoside 19
followed by the desired prenylated galactoside 20. Attempts to glycosylate 15 were unsuccessful.
Scheme 4. Reagents and conditions: (a) 2-methyl-3-buten-2-ol (1.9 equiv.), TsOH (cat.),
DCM/MeOH, Δ; (b) 21, BF3·Et2O, −78 °C, DCM; (c) K2CO3, MeOH:MTBE (5:1).
2.2. Antibacterial Activity
2.2.1. Activity of Semi-Synthetic Pseudopteroxazoles in M. tuberculosis Assays
The biological activities of fifteen semi-synthetic pseudopteroxazoles and isopseudopteroxazoles
are shown in Table 1. The minimum inhibitory concentrations (MICs) against M. tuberculosis H37Rv
(ATCC 27294) were determined in vitro using the microplate Alamar blue assay (MABA) [20]. Generally
substitutions at the C-21 oxazole moiety in 1 lead to congeners with reduced activity against M.
tuberculosis H37Rv, however, three compounds (7a/7b, 22 & 25) showed activity against M.
tuberculosis H37Rv comparable to 1. Semi-synthetic homopseudopteroxazole (2) was not active
against M. tuberculosis H37Rv in contrast to the literature report for natural 2 isolated from P.
elisabethae, which was reported to show 80% inhibition against M. tuberculosis H37Rv at 12.5 μg/mL
(40 μM) [7]. Our result with 2 was consistent with the inactivity of other members of the series with
lipophilic C-21 substituents.

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Table 1. Antitubercular, low-oxygen-recovery assay (LORA) and cytotoxic activity of
semi-synthetic pseudopteroxazoles in vitro.
MABA a MIC LORA b LORA b MIC Vero cell IC50
Compound
SI d
[μg/mL] (% inh) % inh c
[μg/mL]
50
[μg/mL] (% inh)
1 (Ptx-H)
15
>128 (6.3%)
13
99.7
22.6
92.5
100.0
83.3
−19.0
99.0
59.1
90.0
13.7
99.8
99.1
99.1
99.0
97.1
NT
>128 (0%)
>8.6
NA
>9.7
3.6
NA h
NA
0.8
2 (Ptx-(CH2)4CH3)
7a/7b (Ptx-CH2-(1H-imidazol-5-yl)) e,f
22 (iso-Ptx-H)
NT
>128 (0%)
12
>128 (4%)
14
44
52
34
23 (Ptx-(2-CH3O-Ph))
24 (Ptx-(4-F-Ph))
25 (Ptx-CH3)
>82 (48%)
>31 (20%)
15
NT g
NT
>31 (0%)
12
NT
26 (Ptx-CH(CH3)CH2CH3)
27 (Ptx-(CH2)2SCH3)
28 (Ptx-CH2Ph)
>103 (0%)
106.8
NT
73
NA
>1.2
NA
0.5
NT
>128 (0%)
82
>128 (28%)
53
NT
29 (Ptx-CHOHCH3)
30 (Ptx-(CH2)2CO2CH3)
31 (Ptx-(CH2)2CO2H)
32 (Ptx-(CH2)2CONH2)
33 (Ptx-CH2CONH2)
Rifampin
NT
24
>128 (81%)
95
62
31
NA
1.1
NT
102
54
29
NT
1.9
59
NT
45
0.8
0.04
0.93
>128 (65%)
NT
NT
NA
NA
NA
Isoniazid
0.03
NT
NT
PA824
0.15
NT
NT
a Microplate Alamar blue assay against M. tuberculosis H37Rv (ATCC 27294); b Low-oxygen-recovery assay
c
d
against M. tuberculosis H37Rv; % inhibition at 64 μg/mL; Selectivity Index = (Vero Cell IC50)/
e
f
(M. tuberculosis MIC); 3:1 ratio of regioisomers (7a/7b); 7a/7b also displayed activity against MRSA
(IC50 3 μg/mL), VRE (IC50 7.5 μg/mL), M. smegmatis (MIC 4 μg/mL) and M. diernhoferi (MIC 2 μg/mL)
and was inactive against C. albicans and P. aeruginosa at 128 μg/mL; g NT = not tested; h NA = not applicable.
As a measure of potential toxicity the IC50 values of the pseudopteroxazoles against Vero cells [21]
were determined, and the selectivity index was calculated (Vero cell IC50/M. tuberculosis H37Rv MIC).
Only four semi-synthetic pseudopteroxazoles were non-toxic to Vero cells at 128 μg/mL:
pseudopteroxazole (1), homopseudopteroxazole (2), the methionine derivative (27) and the histidine
derivative (7a/7b, 4% toxicity at 128 μg/mL). Of these, two (1 and 7a/7b) exhibited antitubercular
activity resulting in selectivity indices >8.6. The cytotoxicity result for 1 is comparable to that
observed with “natural” pseudopteroxazole (1), which was reported to show no significant cytotoxicity
against the NCI-60 cell line assay [6]. Interestingly, isopseudopteroxazole (22) displayed toxicity
towards the Vero cells (IC50 52 μg/mL), otherwise this regioisomer exhibited very similar
antimicrobial activity to 1.
The pseudopteroxazoles were also tested at a single point concentration (64 μg/mL) in the
low-oxygen-recovery assay (LORA), a model of NRP-TB [22]. Selected active compounds were

Mar. Drugs 2012, 10
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further tested to determine LORA MICs; 7a/7b showed the strongest activity, with an MIC of 12
μg/mL (Table 1). As antibiotics acting on the cell wall are typically not active against NRP-TB, the
LORA activity exhibited by pseudopteroxazole and several semi-synthetic congeners suggests that the
target of these compounds is not the cell wall [22].
The semi-synthetic histidine derivative (7a/7b) is the most promising of the pseudopteroxazoles as
it was non-toxic, exhibited potent broad-spectrum Gram-positive antibiotic activity and was the most
active compound in assays against replicating and NRP-TB (MABA and LORA, respectively). While
the MIC of 7a/7b against M. tuberculosis H37Rv was moderate (13 μg/mL or 34 μM) in comparison to
the first line drugs isoniazid and rifampin, its activity compares favorably to other first and second line
TB treatments such as ethambutol (4.6–9.2 μM), kanamycin (2.5–10.3 μM), capreomycin (0.94–3.7 μM)
and cycloserine (122–490 μM) [23]. One of the most promising attributes of 7a/7b was that it showed
greater potency in LORA (LORA MIC 12 μg/mL or 31 μM) compared to 1 (LORA MIC 50 μg/mL or
162 μM). Activity against NRP-TB is highly desirable given this phenotype contributes to lengthy
treatment regimens leading to poor patient compliance ultimately translating into increased TB
transmission rates and selection for drug-resistant strains [4]. As shortening of treatment times is a key
goal of current TB chemotherapeutic research, this compound may represent a starting point for
developing drugs that are more efficacious towards latent TB infections [1].
Recently a diterpene that is structurally related to pseudopterosins has been shown to possess
activity against M. tuberculosis H37Rv and a multidrug-resistant strain [24]. These examples suggest
that the semi-synthetic pseudopteroxazole congeners may also display activity against drug-resistant
strains. Thus, we determined MICs of 1 against six isogenic mono-resistant M. tuberculosis H37Rv
strains (Table 2). In our study the six strains tested were singly-resistant to a structurally diverse group
of antibiotics targeting a variety of cellular targets. The aminoglycosides streptomycin and kanamycin
target the 30S ribosome, the fluoroquinolone moxifloxacin targets DNA gyrase, the ansamycin
antibiotic rifampin targets RNA polymerase and the small heterocyclic antibiotics isoniazid and
cycloserine inhibit cell wall biosynthesis, albeit via distinct mechanisms [25–27]. Pseudopteroxazole
exhibited virtually identical activity against wild-type and antibiotic resistant strains. While 1 was
significantly less potent than rifampin and isoniazid none of the antibiotic resistant strains exhibited
cross-resistance to 1, suggesting that it may exert its antimicrobial activity via a unique mode of action.
Table 2. Susceptibility of mono-antibiotic resistant M. tuberculosis H37Rv isogenic strains
to pseudopteroxazole, rifampin and isoniazid.
MABA a MIC [μg/mL]
Compound
H37Rv
7
RMPr
8
INHr
SMr
KMr
16
CSr
14
MOXr
8
1
8
14
Rifampin
Isoniazid
0.03
0.03
>3.3
0.12
0.02
>1.10
0.08
0.13
0.02
0.13
0.01
0.12
0.02
0.03
a Microplate Alamar blue assay against wild-type M. tuberculosis H37Rv (H37Rv) and M. tuberculosis H37Rv
isogenic strains resistant to rifampin (RMPr), isoniazid (INHr), streptomycin (SMr), kanamycin (KMr),
cycloserine (CSr) and moxifloxacin (MOXr).

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2.2.2. Anti-Microbial Activity of Semi-Synthetic Pseudopteroquinoxalines, Pseudopterosins, and the
Prenylated Mimics
The biological data of the pseudopterosin derivatives (including the pseudopteroquinoxalines) and
of the prenylated aromatic mimics of pseudopterosins are summarized in Table 3. These compounds
were tested in vitro against MRSA, VRE, M. smegmatis (ATCC 12051), and M. diernhoferi
(ATCC 19340) using microbroth dilution antibiotic susceptibility assays. The compounds were also
assessed for activity against M. tuberculosis, Vero cells and in the LORA. Natural pseudopterosins
G–J (3a–d) showed the strongest activity against all pathogens, and exhibited low toxicity towards
Vero cells. The mono-methyl ether (9) retained some activity against all pathogens; however, all other
semi-synthetic derivatives showed significantly reduced activity against one or more organisms.
Pseudopteroquinoxaline (5) was moderately active against the three mycobacteria; however, it was
toxic towards the Vero cells.
Table 3. Antibacterial, LORA and cytotoxicity activities of pseudopterosins,
pseudopteroquinoxalines and structural mimics in vitro.
IC50 [μg/mL]
MIC [μg/mL] (% inh)
Compound
3a–d f (Ps G–J mixture)
4 f (Ps G–J aglycone)
5 (pseudopteroquinoxaline) f
<1
88
<1
2
8
2
8
30
97.9
NT g
NT g
NT
NT
NT
52
>128 (32%) >4.3
>128
>128 (86%) 53.1
50
22
15
49
NA h
>128 >128
16
NT
64
NT
29
84
99.9
99.9
0.8
6 (Me ether of pseudopteroquinoxaline) NT
NT
22
12
25
0.2
8 f (Ps G–J mono-pentyl ether)
9 f (Ps G–J mono-methyl ether)
10 f (Ps G–J di-methyl ether)
11 f (triflate)
47
9
>128 >128 >128 (85%) 35.1
NA
4
4
30
99.7
>128 (26%) >4.3
>128
>64
>64 >128 (63%) 77.5
>64 >128 (44%) 37.5
>64 >128 (77%) 80.0
NT
NT
NT
NT
58
51
NA
NA
NA
NA
1.1
>128 >128 >64
>128 70 64
>128 >128 128
51
>128 (0%)
44
12 f (carbamate)
14 f (mono-prenylated mimic)
15 f (di-prenylated mimic)
16 f (tri-prenylated mimic)
20 (galactoside of 14)
Vancomycin
64
8
>128 (24%) −4.7
20
3
3
8
59
56
99.7
79.7
64
>128
>128
8
NT
NT
NT
0.93
>128 (29%) >2.3
>128 >128 >128 >128 >128 (1.4%) −24.8
82
NA
NA
NA
NA
NA
1.23
NT
NT
NT
NT
0.88
NT
NT
4
NT
4
NT
NT
NT
NT
NT
NT
NT
Rifampin
0.04
0.03
0.15
Isoniazid
NT
NT
NT
NT >128 (65%)
NT NT
PA824
NT
NT
a
b
Microbroth dilution antibiotic susceptibility assay; Microplate Alamar blue assay against M. tuberculosis H37Rv
(ATCC 27294); c Low-oxygen-recovery assay against M. tuberculosis H37Rv (ATCC 27294); d % inhibition at 64 μg/mL;
e
f
Selectivity Index = (Vero Cell IC50)/(M. tuberculosis MIC); No inhibitory activity was observed against C. albicans
nor against P. aeruginosa at 128 μg/mL; g NT = not tested; h NA = not applicable.

Mar. Drugs 2012, 10
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The activity of the prenylated aromatic mimics is interesting: the mono-prenylated compound (14)
was only weakly active against M. smegmatis and M. diernhoferi; the tri-prenylated compound (16)
showed moderate activity against M. diernhoferi, and was also active against VRE and M. tuberculosis;
the di-prenylated compound (15) was the most active as it showed good to moderate activity against all
bacteria with an IC50 of 3 μg/mL against VRE. To provide a glycoside mimic of pseudopterosins, the
galactoside derivative 20 was synthesized from 14. This synthetic galactoside was less active than the
parent prenylated mimic and no additional glycosides were synthesized following unsuccessful
glycosylation attempts utilizing the di-prenylated compound (15). The activity of the prenylated
aromatics hints at the possibility of a simpler pharmacophore than the natural diterpene skeleton.
However, more work is required here as it does not necessarily follow that these mimics operate
through the same mechanism of action as the pseudopterosins/pseudopteroxazoles.
2.2.3. Relevance of the Use of Model Mycobacteria
Due to the challenges associated with cultivating M. tuberculosis (slow growth rate, biosafety risk,
biosafety level 3 containment requirements) we initially used two fast growing mycobacteria,
M. smegmatis and M. diernhoferi, as model organisms to evaluate the antimycobacterial activity of the
compounds described herein. The usefulness of fast growing mycobacteria to detect compounds
inhibitory to the growth of TB, particularly the widely used M. smegmatis, has recently been
questioned. In a comprehensive study of the relative activity of 5000 compounds against M. smegmatis
and M. tuberculosis, 50% of compounds active against M. tuberculosis were not detected as active
against M. smegmatis [27]. Despite this disparity, the use of fast growing mycobacterial models
continue to have utility as a whole cell screen against M. smegmatis identified the promising new
diarylquinoline, TMC207, which is currently in Phase II–III clinical trials for the treatment of
multidrug-resistant TB [1]. In the evaluation of the series of pseudopteroxazole congeners the model
mycobacteria were good predictors of antimycobacterial activity (Tables 1 and 3, and previously
published data [11]). There were no instances of false-negative predictions (i.e., the model organisms
were insensitive to a compound which inhibited the growth of M. tuberculosis). However, there were a
few instances where the model organisms predicted activity which was not mirrored by M. tuberculosis
in the MABA (4, 27, 28, 31). Interestingly, in three of these cases significant activity was observed
in the LORA. These observations suggest that model mycobacteria can be a reliable predictor of
M. tuberculosis activity for a particular series of molecules.
3. Experimental Section
3.1. General Experimental Procedures
The MABA, LORA and Vero cell assays were all conducted by the Institute for Tuberculosis
Research following published protocols [20–22]. NMR spectra were obtained on a Bruker Avance III
1
13
600 MHz NMR spectrometer operating at 600 and 150 MHz for H and C, respectively. Chemical
shifts (δ) are reported in ppm and were referenced to residual solvent signals: CDCl3 (δH 7.26; δC 77.0),
(CD3)2SO (δH 2.50; δC 39.52), CD3OD (δH 3.31; δC 49.0), C6D6 (δH 7.15; δC 128.02). The phrase
“standard work up procedure” refers to the following protocol: the organic phase is dried (MgSO4),

Mar. Drugs 2012, 10
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filtered through glass wool, and then concentrated in vacuo. All other general experimental procedures
and the syntheses of compounds 1, 2, 4, & 22–33 are identical to those previously described [11].
3.2. Synthesis
3.2.1. Synthesis of Pseudopteroquinoxaline (5)
A sample of pseudopterosin G–J (3a–d, 20 mg, 0.041 mmol) was refluxed in methanolic HCl (1.5 N,
10 mL) under N2 for 2.5 h. The crude mixture was then partitioned between EtOAc and H2O and the
EtOAc phase was concentrated in vacuo to give the crude aglycone (4). This material was dissolved in
EtOH (15 mL) and air was bubble through the sample for 10 min. Ethylenediamine (50 μL, excess)
and Ag2O (14 mg, 0.065 mmol) were then added and the reaction was refluxed for 1.5 h. The reaction
mixture was then filtered through Celite and partitioned between EtOAc and H2O. The EtOAc phase
was subjected to the standard work up procedure and then purified by flash chromatography
(Silica, hexane→MTBE gradient) to give 5 (2 mg, 0.0063 mmol, 15% over two steps).
5: yellow oil; [α]25D +103 (c 0.03, CHCl3); IR νmax 2921, 2858, 1470 cm−1; 1H NMR (CDCl3, 600 MHz)
δ 8.74 (m, 2H, H-20, H-21), 5.04 (d, 1H, J = 9.1 Hz, H-14), 4.11 (app. q, 1H, J = 8.5 Hz, H-1), 4.06
(app. q, 1H, J = 7.3 Hz, H-7), 2.64 (s, 3H, H-20), 2.39-2.33 (m, 1H), 2.28–2.23 (m, 1H), 2.23–2.18
(m, 1H), 2.17–2.11 (m, 1H), 1.82 (s, 3H, H-17), 1.70 (s, 3H, H-16), 1.54 (m, 1H), 1.42–1.40 (m, 2H), 1.39
(d, 3H, J = 6.9 Hz, H-19), 1.37–1.32 (m, 1H), 1.26–1.24 (m, 1H), 1.11 (d, 3H, J = 6.2 Hz, H-18)
13
1.14–1.09 (m, 1H); C NMR (CDCl3, 150 MHz) δ 142.1, 142.0, 141.9, 141.3, 141.0, 140.1, 137.0,
132.2, 129.7, 129.7, 44.3, 39.5, 37.4, 33.8, 30.7, 28.5, 26.8, 25.5, 24.7, 20.4, 17.7, 12.8; APCIMS
m/z 321 [M + H]+; HRMS-ES m/z [M + H]+ 321.2313 (calcd for C22H29N2, 321.2325).
3.2.2. Synthesis of 14,15-Dihydro-15-methoxy-pseudopteroquinoxaline (6)
To a solution of the pseudopterosin aglycone (4, 26.3 mg, 0.088 mmol) in DCM (10 mL + 100 μL
H2O) was added Dess-Martin periodinane (68 mg, 0.16 mmol). After stirring for 15 min, MeOH (2 mL)
and ethylenediamine (1 mL) were added. After another 45 min the solvent was removed in vacuo, and
then isopropyl alcohol was added (20 mL). After refluxing overnight additional ethylenediamine (200 μL)
was added and the solution was refluxed for a further 24 h. The reaction products were partitioned
between EtOAc and H2O and the organic phase was subjected to the standard work up procedure to
give an orange brown gum (31.8 mg). Purification by flash chromatography (diol modified silica,
hexane→MTBE gradient) yielded the quinoxaline (5, 4.6 mg, 16%) and the methyl ether (6, 1.6 mg, 5%).
6: amorphous semi solid; [α]25 −5.0 (c 0.08, CHCl3); IR νmax 2925, 2866, 1470, 1079 cm−1;
D
1H NMR (CDCl3, 600 MHz) δ 8.76 (s, 2H, H-20, H-21), 3.89 (app. q, 1H, J = 6.9 Hz), 3.71 (m, 1H),
3.20 (s, 3H, OMe), 2.79 (s, 3H, H-20), 2.49 (m, 1H), 2.21–2.15 (m, 3H), 1.89 (dd, 1H, J = 9.5, 14.5 Hz,
H-14-a), 1.68–1.62 (m, 2H), 1.54–1.50 (m, 1H), 1.41 (d, 3H, J = 6.9 Hz, H-19), 1.27 (s, 6H), 1.26 (m, 2H),
13
1.13 (d, 3H, J = 6.5 Hz); C NMR (CDCl3, 150 MHz) δ 144.7, 142.3, 141.8, 141.6, 141.3, 140.4,
136.5, 129.8, 75.3 (C-15), 49.2 (C-23), 48.6 (C-14), 42.3, 38.2, 34.7, 32.2, 30.3, 29.4, 25.8, 25.7, 25.4,
24.0, 21.0. 12.6; APCIMS m/z 353 [M + H]+; HRMS-ES m/z [M + H]+ 353.2582 (calcd for
C23H33N2O, 353.2587).

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3.2.3. Synthesis of 21-((1H-Imidazol-5-yl)methyl)-pseudopteroxazole (7a) and
21-((1H-Imidazol-5-yl)methyl)-isopseudopteroxazole (7b)
The pseudopteroxazole C-21 (1H-imidazol-4-yl)methyl derivatives (7a and 7b) were synthesized
from the pseudopterosin aglycone (4, 193 mg, 0.64 mmol), Ag2CO3 (1.4 equiv.) and histidine (6.7 equiv.)
following the previously reported general procedure [11]. After purification by flash chromatography
(diol modified silica, hexane→MTBE gradient) the product was obtained in 23% isolated yield (57.5 mg,
2.4:1 ratio of 7a/7b). A portion of this material was subjected to RP-HPLC (Phenomenex, phenylhexyl,
5 μm, 250 × 10 mm, 2.9 mL/min) eluted with MeOH:H2O:HCO2H (70:30:0.1). While the regioisomers
eluted as one asymmetric peak (19.8 to 20.7 min), peak shaving lead to the isolation of an enriched fraction
(3:1 ratio of normal to inverse regioisomer), which was the material used for biological evaluation.
7a/7b (3:1 ratio): orange immobile oil; [α]25 +129.4 (c 0.09, CHCl3); IR νmax 2948, 2921, 2856,
D
1
1446, 1085 cm−1; H and 13C NMR see Supplementary Table S1. APCIMS m/z 390 [M + H]+;
MSMS spectrum see Supplementary Figure S9; HRMS-ES m/z [M + H]+ 390.2549 (calcd for
C25H32N3O, 390.2540).
3.2.4. Synthesis of 10-Pentoxy-pseudopterosin G–J Aglycone (8)
A solution of pseudopterosins G–J (3a–d, 102 mg, 0.2 mmol), K2CO3 (1 g, excess) and iodopentane
(2 mL, excess) in anhydrous acetone was refluxed under N2 for 18 h. The products were then
partitioned between EtOAc and H2O and subjected to the standard work up procedure to give an
orange/brown oil (127 mg). This crude product was then dissolved in 1.5 M HCl in MeOH (10 mL)
and refluxed under N2 for 2 h. The products were partitioned between EtOAc and H2O and the organic
subjected to the standard work up procedure to yield the crude product, which was then purified by
flash chromatography (C18, H2O→MeOH gradient) to yield the pentyl ether (8) (40.3 mg, 0.11 mmol,
52% over 2 steps).
8: immobile oil; [α]25D +71.6 (c 0.787, CHCl3); IR νmax 3523, 2924, 2857, 1456, 1056 cm−1; 1H NMR
(CDCl3, 600 MHz) δ 5.70 (s, 1H), 4.97 (d, 1H, J = 9.2 Hz), 3.84 (m, 1H), 3.75 (m, 1H), 3.67 (m, 1H),
3.17 (m, 1H), 2.17 (m, 1H), 2.07 (s, 3H), 2.06–2.02 (m, 2H), 1.97 (m, 1H), 1.80 (m, 2H), 1.73 (s, 3H),
1.68 (s, 3H), 1.46 (m, 2H), 1.40 (m, 2H), 1.34–1.31 (m, 1H), 1.30 (d, 3H, J = 6.8 Hz), 1.23–1.21
13
(m, 2H), 1.03 (d, 3H, J = 6.0 Hz), 0.95 (m, 1H), 0.95 (t, 3H, 7.2 Hz); C NMR (CDCl3, 150 MHz)
δ 144.8, 142.8, 135.6, 131.3, 129.8, 128.3, 126.7, 125.5, 73.6, 44.7, 40.2, 37.0, 34.0, 32.1, 30.1, 28.8,
28.2, 27.8, 25.4, 23.0, 22.6, 20.0, 17.5, 14.0, 12.7; APCIMS m/z 371 [M + H]+; HRMS-ES m/z
[M + H]+ 371.2942 (calcd for C25H39O2, 371.2945).
3.2.5. Synthesis of 9,10-Dimethoxy-pseudopterosin G–J Aglycone (10)
A stirred solution of 9 [19] (25.5 mg, 0.083 mmol) in dry THF (5 mL), under N2, was allowed to
react with an excess of NaH for 2 h. Iodomethane (200 μL, excess) was then added and the solution
was left stirring at room temperature overnight. The reaction was then carefully quenched with MeOH
(1 mL), and excess iodomethane was removed under a stream of N2. The products were then partitioned
between EtOAc and H2O. The EtOAc fraction was subjected to the standard work up procedure to give

Mar. Drugs 2012, 10
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the crude product which was purified by flash chromatography (silica, hexane→MTBE gradient) to
yield the desired dimethyl ether (10) (18.2 mg, 0.055 mmol, 67%).
1
10: amorphous solid; [α]25 +69.5 (c 0.573, CHCl3); IR νmax 2924, 2861, 1460, 1069 cm−1; H NMR
D
(CDCl3, 600 MHz) δ 4.99 (d, 1H, J = 9.2 Hz), 3.88 (s, 3H), 3.81 (s, 3H), 3.73 (q, 1H, J = 8.8 Hz), 3.26
(m, 1H), 2.15–2.05 (m, 3H), 2.11 (s, 3H), 2.00 (m, 1H), 1.76 (br s, 3H), 1.71 (br s, 3H), 1.39 (m, 1H),
1.31–1.23 (m, 2H), 1.28 (d, 3H, J = 6.9 Hz), 1.07 (d, 3H, J = 6.0 Hz), 0.98 (m, 1H); 13C NMR (CDCl3,
150 MHz) δ 149.4, 149.0, 135.3, 134.0, 133.0, 130.9, 128.5, 128.4, 60.1, 59.8, 44.0, 40.1, 37.3, 34.0,
31.3, 28.3, 27.5, 25.4, 24.3, 20.0, 17.5, 12.1; APCIMS m/z 329 [M + H]+; HRMS-ES m/z [M + H]+
329.2459 (calcd for C22H33O2, 329.2475).
3.2.6. Synthesis of 9-Trifluoromethylsulfonyloxy-10-methoxy-pseudopterosin G–J Aglycone (11)
Triflic anhydride (6 mmol) in DCM was added to a stirred, ice-cooled solution of 9 (178 mg,
0.56 mmol) and Hunig’s base (2 mL) in dry toluene (8 mL). The reaction was stirred under N2, and
allowed to warm to room overnight before being partitioned between DCM and aqueous HCl (1 N).
The organic phase was subjected to the standard work up procedure to yield the crude triflate;
purification was achieved by flash chromatography (silica, hexane→EtOAc gradient) to yield the
triflate (11, 177 mg, 0.4 mmol, 70%, ~90% pure by ELSD LCMS). A portion of the product was
further purified by RP-HPLC (Phenomenex, phenylhexyl, 5 μm, 250 × 10 mm, 4.0 mL/min) using a
gradient of MeOH/H2O (9:1 for 1 min, then to 10:0 over 1–4 min; eluted across 9.9 to 10.25 min).
11: amorphous solid; [α]25 +62.8 (c 0.205, CHCl3); IR νmax 2928, 2869, 1416, 1206, 1139 cm−1;
D
1H NMR (CDCl3, 600 MHz) δ 4.93 (d, 1H, J = 9.3 Hz), 3.74 (s, 3H), 3.72 (m, 1H,), 3.23 (dd, 1H,
J = 7.2, 14.6 Hz), 2.18–2.06 (m, 3H), 2.12 (s, 3H), 2.01 (m, 1H), 1.74 (br s, 3H), 1.70 (br s, 3H), 1.37
(m, 1H), 1.26–1.21 (m, 2H), 1.25 (d, 3H, J = 6.9 Hz), 1.04 (d, 3H, J = 5.9 Hz), 0.97 (m, 1H); 13C NMR
(CDCl3, 150 MHz) δ 147.9, 140.1, 139.7, 136.7, 132.6, 129.7 (2 × C), 129.5, 118.7 (q, J = 320 Hz),
117.6, 60.8, 44.0, 39.8, 37.4, 33.9, 30.9, 28.6, 27.0, 25.4, 23.3, 19.8, 17.6, 12.5; APCIMS m/z 447
[M + H]+; HRMS-ES m/z [M + H]+ 447.1804 (calcd for C22H30F3O4S, 447.1811).
3.2.7. Synthesis of 9-Dimethylcarbamoyloxy-10-methoxy-pseudopterosin G–J Aglycone (12)
A stirred solution of 9 (25.5 mg, 0.083 mmol) in dry THF (5 mL), under N2, was allowed to react
with an excess of NaH for 2 h. Dimethylcarbamoyl chloride (200 μL, excess) was then added and the
solution was stirred overnight. The reaction was then carefully quenched with MeOH (1 mL) and the
products were portioned between EtOAc and H2O. The EtOAc fraction was subjected to the standard
work up procedure to give the crude product which was purified by flash chromatography (silica,
hexane→MTBE gradient) to yield the carbamate (12, 13.7 mg, 0.035 mmol, 43%).
Carbamate (12): amorphous solid; [α]25D +110.2 (c 0.07, CHCl3); IR νmax 2924, 2861, 1723 (CO), 1451,
1386, 1164 cm−1; 1H NMR (CDCl3, 600 MHz) δ 4.97 (d, 1H, J = 9.2 Hz), 3.70 (s, 3H), 3.71–3.67 (m,
1H), 3.16 (s, 3H), 3.04 (s, 3H), 3.03 (m, 1H), 2.14–2.10 (m, 2H), 2.07 (s, 3H), 2.07–2.02 (m, 2H),
1.98–1.94 (m, 1H) 1.73 (br s, 3H), 1.68 (br s, 3H), 1.34–1.16 (m, 6H), 1.01 (d, 3H, J = 6.1 Hz), 0.99
(m, 1H); 13C NMR (CDCl3, 150 MHz) δ 154.6, 148.6, 140.9, 136.4, 135.3, 130.6, 129.6, 128.7, 128.3,

Mar. Drugs 2012, 10
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60.5, 44.2, 40.0, 37.3, 36.8, 36.4, 33.7, 31.5, 28.6, 27.3, 25.4, 23.8, 19.9, 17.5, 12.3; APCIMS m/z 386
[M + H]+; HRMS-ES m/z [M + Na]+ 408.2505 (calcd for C24H35NO3Na, 408.2509).
3.2.8. Prenylation of 2,6-Dimethoxyphenol: Synthesis of 14, 15 & 16
A solution of 2-methyl-3-buten-2-ol (640 mg, 7.4 mmol) in DCM (3 mL) was added dropwise to a
stirred mixture of 2,6-dimethoxyphenol (13, 612 mg, 3.97 mmol) and TsOH (19 mg, cat) in
DCM/MeOH (3:1, 30 mL). After stirring for 96 h at room temperature the solution was refluxed for
20 h and then partitioned between H2O and EtOAc. The organic phase was subjected to the standard
work up procedure to yield a crude oil (793 mg) which was subjected to flash chromatography
(C18, H2O→MeOH gradient) to yield the mono-prenylated product (14, 239 mg, 1.08 mmol, 27%),
the di-prenylated product (15, 96 mg, 0.33 mmol, 8%), and the triprenylated product (16, 20 mg,
0.055 mmol, 1.4%) along with recovered starting material (321 mg, 52%).
2,6-Dimethoxy-3-(3-methylbut-2-enyl)phenol (14): oil; IR νmax 3456, 2931, 2835, 1493, 1288, 1090
1
cm−1; H NMR (CDCl3, 600 MHz) δ 6.63 (d, 1H, J = 8.5 Hz), 6.60 (d, 1H, J = 8.4 Hz), 5.53
(s, 1H, OH), 5.27 (m, 1H, H-8), 3.863 (s, 3H, OMe), 3.861 (s, 3H, OMe), 3.30 (d, 2H, J = 7.3 Hz);
13
1.73 (s, 6H, H-10 & H-11); C NMR (CDCl3, 150 MHz) δ 145.9, 145.2, 138.5, 132.0, 127.8, 123.1,
119.1, 106.4, 60.4, 56.2, 28.0, 25.7, 17.7; APCIMS m/z 223 [M + H]+; HRMS-ES m/z [M + Na]+
245.1142 (calcd for C13H18O3Na, 245.1148).
2,6-Dimethoxy-3,4-bis(3-methylbut-2-enyl)phenol (15): pale yellow oil; IR νmax 3440, 2964, 2912,
1854, 1497, 1309, 1116 cm−1; 1H NMR (CDCl3, 600 MHz) δ 6.50 (s, 1H, H-5), 5.23 (m, 1H, olefinic),
5.07 (m, 1H, olefinic), 3.85 (s, 3H, OMe), 3.83 (s, 3H, OMe), 3.32 (d, 2H, J = 6.5 Hz), 3.25 (d, 2H,
J = 6.5 Hz), 1.77 (s, 3H), 1.75 (s, 3H), 1.71 (s, 3H), 1.68 (s, 3H). 13C NMR (CDCl3, 150 MHz)
δ 145.5, 145.4, 136.7, 132.1, 131.0 (2 × C), 126.0, 123.7, 123.4, 107.6, 60.6, 56.1, 31.4, 25.7, 25.6,
25.1, 17.9, 17.8; APCIMS m/z 291 [M + H]+; HRMS-ES m/z [M + Na]+ 313.1763 (calcd for
C18H26O3Na, 313.1774).
2,6-Dimethoxy-3,4,5-tris(3-methylbut-2-enyl)phenol (16): colorless oil; IR νmax 3400, 2964, 2912,
1
2855, 1456, 1087 cm−1; H NMR (CDCl3, 600 MHz) δ 5.49 (s, 1H, OH), 5.09 (m, 2H, olefinic), 4.97
(m, 1H, olefinic), 3.80 (s, 6H, OMe), 3.32 (d, 4H, J = 6.5 Hz), 3.23 (d, 2H, J = 6.0 Hz), 1.74 (s, 6H), 1.68
13
(broad overlapping singlets, 12H). C NMR (CDCl3, 150 MHz) δ 144.2, 140.1, 131.2, 131.0, 130.7,
129.5, 123.9, 123.8, 60.9, 27.8 (2 × C), 25.6, 25.55, 25.53, 17.90, 17.91; APCIMS m/z 359 [M + H]+;
HRMS-ES m/z [M + Na]+ 381.2409 (calcd for C23H34O3Na, 381.2400).
3.2.9. Synthesis of the Glycosyl Donor 2,3,4,6-Tetra-O-benzoyl-β-
Trichloroacetimidate (21)
D-galactopyranosyl
The glycosyl donor was synthesized from 2,3,4,6-tetra-O-benzoyl-α-D-galactopyranosyl bromide,
which was freshly prepared using a previously described method [28]. The glycosyl bromide (2.05 g,
3.11 mmol) was hydrolyzed and subsequently reacted with trichloroacetonitrile according to existing
methodology to provide the glycosyl donor 21 (704 mg, 0.951 mmol, 31% over two steps) [29].

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3.2.10. Synthesis of 2,6-Dimethoxyphenol-2,3,4,6-tetra-O-benzoyl-β-D-galactopyranoside (17)
2,6-Dimethoxyphenol (13, 30.0 mg, 0.195 mmol) and freshly prepared benzoylated glycosyl donor
(21, 151.0 mg, 0.229 mmol) were dissolved in 8 mL anhydrous DCM and stirred with 3Å molecular
sieves (500 mg) under a N2 atmosphere for 20 min. Afterwards, the mixture was cooled to −78 °C and
BF3·Et2O (0.206 mmol) was added. After stirring for 2.5 h at −78 °C, the glycosyl donor was
completely consumed as indicated by TLC. The reaction was quenched with Et3N (100 μL, excess),
filtered, diluted with EtOAc, and partitioned with H2O. The EtOAc phase was recovered and
concentrated in vacuo to provide the crude galactoside. Purification by flash chromatography (silica,
hexane→MTBE gradient), yielded 17 (101.9 mg, 0.139 mmoles, 71%).
17: white solid; [α]25D +67.4 (c 0.1917, CH2Cl2); IR νmax 3065, 2962, 2939, 2838, 1726, 1601, 1479,
1
1258, 1109, 1069, 709 cm−1; H NMR (C6D6, 600 MHz) δ 8.11 (d, 2H, J = 7.8 Hz), 8.10 (d, 2H,
J = 7.8 Hz), 8.07 (d, 2H, J = 7.8 Hz), 8.00 (d, 2H, J = 7.8 Hz), 7.10 (t, 1H, J = 7.5 Hz), 7.06 (t, 1H,
J = 7.5 Hz), 7.03 (t, 2H, J = 7.7 Hz), 7.01 (t, 1H, J = 7.5 Hz), 6.92 (t, 2H, J = 7.6 Hz), 6.91 (t, 2H,
J = 7.6 Hz), 6.85 (t, 1H, J = 7.5 Hz), 6.78 (t, 1H, J = 8.4 Hz, H-4), 6.73 (t, 2H, J = 7.7 Hz), 6.60 (dd,
1H, J = 10.4, 7.9 Hz, H-2′), 6.23 (d, 2H, J = 8.4 Hz, H-3), 6.14 (dd, 1H, J = 3.6, 1.2 Hz, H-4′), 5.80 (dd,
1H, J = 10.4, 3.6 Hz, H-3′), 5.44 (d, 1H, J = 7.9 Hz, H-1′), 4.67 (dd, 1H, J = 11.3, 6.6 Hz, H-6′), 4.36
(dd, 1H, J = 11.3, 6.6 Hz, H-6′), 3.66 (app. ddd, 1H, J = 6.6, 1.2 Hz, H-5′), 3.25 (s, 6H, OMe);
13C NMR (C6D6, 150 MHz) δ 165.9, 165.8, 165.7, 165.4, 153.9 (C-2), 136.1 (C-1), 133.2, 133.1,
133.0, 132.7, 130.8, 130.5, 130.3, 130.1, 130.1, 130.0, 129.7, 129.6, 128.8, 128.6, 128.4, 128.3, 124.6
(C-4), 106.1 (C-3), 103.1 (C-1′), 72.7 (C-3′), 71.9 (C-5′), 71.4 (C-2′), 68.8 (C-4′), 62.3 (C-6′), 55.9
(OMe); HRMS-ES m/z [M + Na]+ 755.2088 (calcd for C42H36O12Na, 755.2099).
3.2.11. Synthesis of 2,6-Dimethoxyphenol-β-D-galactopyranoside (18)
Compound 17 (40.3 mg, 55.0 μmol) was stirred with K2CO3 (38.8 mg) in 3 mL MeOH:MTBE (5:1)
for 20 h. After deprotection was completed, as indicated by TLC (silica, hexane/MTBE), the reaction
mixture was diluted with H2O and desalted by solid phase extraction (C18, 1:19 MeOH:H2O). The
product was eluted with MeOH and purified by flash chromatography (C18, H2O→MeOH gradient) to
provide 18 (12.5 mg, 39.5 μmol, 72%).
18: colorless solid; [α]25 −15.9 (c 0.8333, CH2Cl2); IR νmax 3388, 3008, 2940, 2841, 1599, 1480,
D
1
1256, 1108, 1072 cm−1; H NMR ((CD3)2SO, 600 MHz) δ 6.97 (t, 1H, J = 8.4 Hz, H-4), 6.66 (d, 2H,
J = 8.4 Hz, H-3), 4.83 (d, 1H, J = 7.6 Hz, H-1′), 4.79–4.74 (m, 2H, C-2′/3′-OH), 4.50-4.44 (m, 2H,
C-4′/6′-OH), 3.74 (s, 6H, OMe), 3.67 (app. t, 1H, J = 3.3 Hz, H-4′), 3.56–3.52 (m, 1H, H-2′),
3.56–3.52 (m, 1H, H-6′), 3.37–3.33 (m, 1H, H-3′), 3.36–3.32 (m, 1H, H-6′), 3.27 (app. t, 1H, J = 6.3 Hz,
13
H-5′); C NMR ((CD3)2SO, 150 MHz) δ 153.0 (C-2), 134.9 (C-1), 123.7 (C-4), 106.6 (C-3), 103.5
(C-1′), 75.5 (C-5′), 73.2 (C-3′), 71.4 (C-2′), 67.9 (C-4′), 60.1 (C-6′), 56.4 (OMe); HRMS-ES m/z
[M + Na]+ 339.1043 (calcd for C14H20O8Na, 339.1050).

Mar. Drugs 2012, 10
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3.2.12. Synthesis of 2,6-Dimethoxy-3-(3-methylbut-2-enyl)phenol-2,3,4,6-tetra-O-benzoyl-β-
galactopyranoside (19)
D-
The glycosylation procedure, described for the synthesis of 17, was repeated using the benzoylated
glycosyl donor (21, 175.6 mg, 0.266 mmol) and 14 (44.6 mg, 0.201 mmol) as the glycosyl accepting
substrate. The reaction crude was separated by flash chromatography (silica, hexane→MTBE gradient)
to provide 19 (149.1 mg, 0.186 mmol, 93%).
19: pale yellow solid; [α]25D +75.9 (c 0.225, CH2Cl2); IR νmax 3063, 2966, 2936, 1726, 1602, 1493,
1
1451, 1094, 1069, 709 cm−1; H NMR (CD3OD, 600 MHz) δ 8.13 (d, 2H, J = 7.7 Hz), 7.90 (d, 4H,
J = 7.8 Hz), 7.75 (d, 2H, J = 7.8 Hz), 7.67 (t, 1H, J = 7.7 Hz), 7.57 (t, 1H, J = 7.7 Hz), 7.54 (t, 2H,
J = 7.7 Hz), 7.51 (t, 1H, J = 7.7 Hz), 7.45 (t, 1H, J = 7.6 Hz), 7.40 (t, 2H, J = 7.7 Hz), 7.36 (t, 2H,
J = 7.7 Hz), 7.25 (t, 2H, J = 7.7 Hz), 6.80 (d, 1H, J = 8.6 Hz, H-4), 6.54 (d, 1H, J = 8.6 Hz, H-5), 6.03
(dd, 1H, J = 10.3, 8.0 Hz, H-2′), 6.00 (app. d, 1H, J = 3.4 Hz, H-4′), 5.78 (dd, 1H, J = 10.3, 3.4 Hz, H-3′),
5.64 (d, 1H, J = 8.0 Hz, H-1′), 5.14 (app. t, 1H, J = 7.4 Hz, H-8), 4.58 (dd, 1H, J = 10.8, 7.0 Hz, H-6′),
4.54 (app. dd, 1H, J = 7.0, 4.9 Hz, H-5′), 4.47 (dd, 1H, J = 10.8, 4.9 Hz, H-6′), 3.75 (s, 3H, C2-OMe),
3.53 (s, 3H, C6-OMe), 3.17-3.09 (m, 2H, H-7), 1.67 (s, 3H, H-10), 1.64 (s, 3H, H-11); 13C NMR
(CD3OD, 150 MHz) δ 167.5, 167.3, 167.1, 166.8, 152.7 (C-2), 152.6 (C-6), 139.9 (C-1), 134.9, 134.6,
134.5, 134.4, 134.3, 132.9, 131.0, 131.0, 130.9, 130.7, 130.7, 130.6, 130.6, 130.5, 130.2 (C-9), 129.9,
129.6, 129.6, 129.5, 129.5, 129.1 (C-3), 129.0, 128.8, 128.7, 125.9 (C-4), 124.4 (C-8), 109.0 (C-5),
103.2 (C-1′), 73.6 (C-3′), 73.0 (C-5′), 72.3 (C-2′), 70.2 (C-4′), 63.7 (C-6′), 61.7 (2-OMe), 56.6
(6-OMe), 29.0 (C-7), 25.9 (C-10), 17.9 (C-11); HRMS-ES m/z [M + Na]+ 823.2754 (calcd for
C47H44O12Na, 823.2725).
3.2.13. Synthesis of 2,6-Dimethoxy-3-(3-methylbut-2-enyl)phenol-β-D-galactopyranoside (20)
The deprotection procedure, described for the synthesis of 18, was repeated with 19 (38.5 mg,
48.1 μmol) and K2CO3 (33.4 mg). The deprotected glycoside was purified with the method described
for 17 to yield 20 (13.9 mg, 36.2 μmol, 75%).
20: colorless solid; [α]25 −6.44 (c 0.6917, CH3OH); IR νmax 3392, 2967, 2914, 1602, 1494, 1463,
D
1
1442, 1090 cm−1; H NMR ((CD3)2SO, 600 MHz) δ 6.79 (d, 1H, J = 8.5 Hz, H-4), 6.70 (d, 1H,
J = 8.5 Hz, H-5), 5.20 (app. t, 1H, J = 7.3 Hz, H-8), 4.96 (d, 1H, J = 4.5 Hz, C-2′-OH), 4.92 (d, 1H,
J = 7.6 Hz, H-1′), 4.80 (d, 1H, J = 5.3 Hz, C-3′-OH), 4.49 (m, 1H, C-4′-OH), 4.47 (m, 1H, C-6′-OH),
3.76 (s, 3H, C6-OMe), 3.72 (s, 3H, C2-OMe), 3.68 (app. dd, 1H, J = 3.5 Hz, H-4′), 3.59–3.55 (m, 1H,
H-2′), 3.55–3.52 (m, 1H, H-6′), 3.39–3.36 (m, 1H, H-3′), 3.35–3.32 (m, 2H, H-6′), 3.29 (app. t, 1H,
J = 6.2 Hz, H-5′), 3.24–3.15 (m, 2H, H-7), 1.68 (s, 3H, H-10), 1.67 (s, 3H, H-11); 13C NMR
((CD3)2SO, 150 MHz) δ 151.6 (C-2), 151.1 (C-6), 138.8 (C-1), 131.3 (C-9), 127.4 (C-3), 123.6 (C-4),
123.4 (C-8), 108.9 (C-5), 103.2 (C-1′), 75.5 (C-5′), 73.2 (C-3′), 71.4 (C-2′), 67.9 (C-4′), 60.7 (6-OMe),
60.1 (C-6′), 56.5 (2-OMe), 27.7 (C-7), 25.5 (C-10), 17.6 (C-11); HRMS-ES m/z [M + Na]+ 407.1687
(calcd for C19H28O8Na, 407.1676).

Mar. Drugs 2012, 10
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4. Conclusions
In conclusion, we have synthesized a series of pseudopterosin and pseudopteroxazole derivatives,
including simple prenylated aromatic diterpene mimics, and evaluated their antimicrobial activity
against M. tuberculosis H37Rv, M. smegmatis, M. diernhoferi, MRSA and VRE. The major SAR
emanating from this study pertains to the C-9 and C-10 substituents off the natural pseudopterosin-like
scaffold. Variability in this region is tolerated for activity against M. tuberculosis H37Rv and other
Gram-positive pathogens, such as MRSA and VRE. For instance, the phenolic (e.g., 9), benzoxazole
(e.g., 7a), and quinoxaline (e.g., 5) derivatives all retained activity, though the latter was inactive
against MRSA and VRE. Appropriate substitution at the C-9/C-10 position can lead to improved
activity. In terms of Vero cell activity, while pseudopterosins (3a–d) did not display toxicity, a priori
pseudopteroxazoles or other non-phenolic derivatives may represent better candidates for development
since pseudopterosins may potentially be metabolized to the reactive ortho-quinone (4) or
related derivatives.
It is likely that pseudopterosins and pseudopteroxazoles operate through a similar, and potentially
novel, mechanism of action. We have commenced studies aiming to identify the antimicrobial
mechanism of action of the pseudopteroxazoles and have begun investigating the effect of modifying
other regions of the scaffold on biological activity.
Acknowledgments
The authors are grateful for services provided by S. Franzblau and colleagues at the Institute for
Tuberculosis Research (U Illinois), who conducted the LORA, MABA and Vero cell assays on a fee
for service basis. We also acknowledge experimental assistance from M. Lanteigne (microbiology) and
K. Ballem (synthesis), and for NMR services provided by L. Kerry and C. Kirby (Agriculture &
Agrifood Canada). The authors gratefully acknowledge financial support from the Natural Sciences
and Engineering Council of Canada (NSERC), the Canada Research Chair Program, the Atlantic
Innovation Fund, and the Jeanne and Jean-Louis Levesque Foundation to UPEI; and Nautilus
acknowledges funding from the National Research Council’s Industrial Research Assistance Program
(IRAP). We are indebted to the Government of The Bahamas for providing a Marine Resource
Collections Permit.
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Samples Availability: Available from the authors.
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