Journal of Medicinal Chemistry
Brief Article
Bruker. Mass spectra were measured using electrospray ionization (+)
with a VG Plattform II spectrometer from Fisons. High resolution
mass spectra were measured by a MALDI LTQ Orbitrap XL
spectrometer from Thermo Scientific. All compounds were charac-
terized by NMR and MS. All final compounds had a purity of ≥95% as
determined by HPLC (LC2020, Shimadzu, Duisburg, Germany),
except for 6f (92%). Data are expressed as mean values with SE. All
IC50 and EC50 values are means with SE of the IC50 or EC50 values
obtained from measurements at five different concentrations of the
compounds in 3−5 independent experiments. IC50 and EC50 values
were determined using a sigmoidal dose response (variable slope)
equation from GraphPad Prism (GraphPad Software, LaJolla, CA)
software.
General Procedure for the Preparation of Compounds 3a−c
(o-, m-, p-). A solution of ethyl 1H-pyrrole-2-carboxylate (1) (7.2
mmol) in DCM (50 mL) was cooled to 0 °C. Tetrabutylammonium
iodide (0.22 mmol) and 50 mL of sodium hydroxide solution (50%)
were added. The mixture was stirred for 30 min at 0 °C before
(bromomethyl)benzonitrile (2) (7.9 mmol) was added. The mixture
was allowed to warm to room temperature and stirred vigorously
overnight. The reaction was quenched by adding concentrated
hydrochloric acid until a pH of 1 was reached. The aqueous layer
was extracted three times with 20 mL DCM. The collected organic
layers were washed twice with 10 mL of brine, dried over MgSO4, and
concentrated under reduced pressure. After purification by flash
chromatography (Hex:EE 0−15%), white crystals remained.
General Procedure for the Preparation of the Compounds
4a−c. A mixture of ethyl (cyanobenzyl)-1H-pyrrole-2-carboxylate
(3a−c) (5.9 mmol, 1 equiv) and Raney nickel (5.9 mmol) in 100 mL
of dry ammoniacal methanol was stirred overnight at room
temperature at H2 atmosphere under a pressure of 6 bar. The catalyst
was filtered off through Celite, and the solvent was removed under
reduced pressure to give a yellow oil.
PPAR Transactivation Assay. COS7 cells were grown in DMEM
supplemented with 10% FCS, sodium pyruvate, and penicillin/
streptomycin at 37 °C and 5% CO2. The day before transfection,
cells were seeded in 96-well plates at a density of 30000 cells per well.
Transient transfection was carried out by Lipofectamine LTX reagent
(Invitrogen) according to the manufacturer’s protocol with pFR-Luc
(Stratagene), pRL-SV40 (Promega), and the Gal4-fusion receptor
plasmids (pFA-CMV-hPPAR-LBD) of the respective subtype. Five h
after transfection, the medium was changed to DMEM without phenol
red and 10% FCS, containing 0.1% DMSO and the respective
concentrations of the test compounds.
Following overnight incubation with the test compounds, cells were
assayed for reporter gene activity using Dual-Glo luciferase assay
system (Promega, Mannheim, Germany) according to the manufac-
turer’s protocol. Luminescence was measured with a GENios Pro
luminometer (Tecan Deutschland GmbH, Crailsheim, Germany).
Each concentration of the compounds was tested in triplicate wells,
and each experiment was repeated independently at least three times.
Normalization for transfection efficacy and cell growth was done by
division of the firefly luciferase data by renilla luciferase data, resulting
in relative light units. Activation factors were obtained by dividing by
DMSO control. EC50 and standard deviation values were calculated by
mean values of at least three determinations by SigmaPlot 2001 (Systat
Software GmbH, Erkrath, Germany) using a four-parameter logistic
regression. All compounds were evaluated by comparison of the
achieved maximum effect to that of the reference compound (GW
7647 for PPARα, pioglitazone for PPARγ, and L165,041 for PPARδ
each with 1 μM).
ASSOCIATED CONTENT
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S
* Supporting Information
Assay protocols, purity determination method, and NMR and
mass analysis data of compounds 5a−i and 6b-i. This material
General Procedure for the Preparation of the Compounds
5a−i. A solution of ethyl 1-(aminomethyl)benzyl)-1H-pyrrole-2-
carboxylate (4a−c) (0.97 mmol) and N,N-diisopropylethylamine
(2.9 mmol) in 10 mL of dry DCM was stirred at room temperature
under argon. An isocyanate (0.97 mmol) was added, and the mixture
was stirred overnight. The solvent was evaporated under reduced
pressure. The crude product was purified by hot filtration in hexane
and recrystallized from ethanol.
AUTHOR INFORMATION
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Corresponding Author
General Procedure to Obtain Carboxylic Acid Compounds
6a−i. The ethyl ester (5a−i) was treated with potassium hydroxide
(0.652 mmol) in a solvent mixture of THF/MeOH/H2O (1:2:2) and
accomplished under microwave irradiation at 90 °C (35 W) during 15
min. The solvent was removed under reduced pressure and the residue
solved in water. For precipitation, 1 M hydrochloric acid was added.
After filtration, the white solid was lyophilized. 1-(2-((3-
Cyclohexylureido)methyl)benzyl)-1H-pyrrole-2-carboxylic acid (6a)
was obtained from ethyl 1-(((ureido)methyl)benzyl)-1H-pyrrole-2-
carboxylate 5a (46 mg, 0.12 mmol) and yielded 25 mg (50% yield). 1H
NMR (CH3OH-d4): δ 7.19 (d, J = 7.2 Hz, 1H), 7.08−7.04 (m, 2H),
6.9 (m, 1H), 6.77 (m, 1H), 6.39 (d, J = 7.2 Hz, 1H), 6.09 (m, 1H),
5.54 (s, 2H), 4.29 (s, 2H), 3.39 (m 1H), 1.79 (m, 2H), 1.64 (m, 2H),
1.51 (m, 1H) and 1.25 (m, 5H) ppm. 13C NMR (CH3OH-d4): δ
160.0, 162.6, 137.7, 135.0, 130.1, 127.3, 126.9, 125.5, 119.9, 117.3,
110.1, 55.9, 52.6, 42.5, 34.3, 31.4, 26.2, 25.3, and 24.8 ppm. HPLC
(98% purity). HRMS: measured m/z [M + H+] 356.1967 (theoretical,
356.1969).
Author Contributions
†These authors contributed equally. The manuscript was
written through contributions of all authors. All authors have
given approval to the final version of the manuscript.
Notes
The authors declare no competing financial interest.
ACKNOWLEDGMENTS
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This work was supported by the Deutsche Forschungsgemein-
schaft (DFG, Sachbeihilfe PR1405/2-1), LOEWE Lipid
Signaling Forschungszentrum Frankfurt (LiFF), the Oncogenic
Signaling Frankfurt (OSF), and Fonds der Chemischen
Industrie. E.B. thanks DAAD-La Caixa and R.B. the Else-
Kroner-Fresenius Foundation Graduiertenkolleg TRIP for a
̈
fellowship.
Activity Assays. sEH activity assay. For the recombinant affinity
purified sEH, we used a fluorescent-based assay19 that uses PHOME
(3-phenyl-cyano(6-methoxy-2-naphthalenyl)methyl ester-2-oxirane-
acetic acid) in a 96-well format assay to determine IC50 values.
Recombinant sEH (2 μg/well) was incubated with inhibitors for 10
min at room temperature in 25 mM Bis-Tris/HCl and 0.1 mg/mL
BSA buffer (110 μL, pH 7.0) before substrate (PHOME) was added
([S]final = 50 μM). Activity was evaluated by measuring the appearance
of the fluorescent product 6-methoxynaphthaldehyde (λem = 330 nm,
λex = 465 nm).
ABBREVIATIONS USED
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AUDA, 12-(3-adamantan-1-yl-ureido)dodecanoic acid;
DHETs, dihydroxyeicosatrienoic acids; EETs, epoxyeicosatrie-
noic acids; FCS, fetal calf serum; LDL, low-densitiy lipoprotein;
MetS, metabolic syndrome; PPAR, peroxisome proliferator-
activated receptor; sEH, soluble epoxide hydrolase; sEHI,
soluble epoxide hydrolase inhibitor; TBAI, tetrabutyl ammo-
nium iodide; TZD, thiazolidinedione
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dx.doi.org/10.1021/jm301194c | J. Med. Chem. 2012, 55, 10771−10775