Organic & Biomolecular Chemistry
Paper
H5, H2′, H3′, H5′, Glc β-COCHb, OCH2, C(O)NHCH2); 3.28 (s, (O)CH3-GalNAc), 1.75 (1H, m, H3b-Neu5Ac), 1.40 (4H, m), 1.11
15H, OCH3); 3.23 (t, 5H, J = 8.4 Hz, H2); 2.66 (t, 10H, J = 7.6 (2H, m, Glc β-COCH2CH2), 1.03 (8H, m, –CH2CH2CH2–); 13C
Hz, triazole-CH2CH2CH2); 1.69–1.53 (m, 20H, CH2 aliphatic NMR (75 MHz, D2O): δ (ppm) 174.8, 174.5, 173.9, 168.5, 159.2,
chain); 1.42–1.23 (m, 50H, CH2 aliphatic chain). 13C NMR 128.4 (2 × CH Ar), 123.1 (C5 triazole), 113.2 (2 × CH Ar) 104.6
(75 MHz, CD3OD): δ ppm 169.6 (C(O)NH); 160.9 (Ar-ipso); (C1-Gal′), 102.7 (C1-Gal), 102.4 (C1-GalNAc), 102.0 (C1-Glc),
148.8 (C4 triazole); 135.7 (Ar-ortho); 130.7 (Ar-para); 129.7 (Ar- 101.5 (C2-Neu5Ac), 80.2 (C3-GalNAc), 78.5 (C4-Glc), 77.0 (C4-
meta); 124.2 (C5 triazole); 105.1 (C1′); 104.2 (C1); 80.7 (C4); Gal), 74.7, 74.6, 74.4, 74.2, 74.1, 74.0, 73.9 (C2 Glc), 72.6 (C3
77.0, 76.5, 76.4, 74.8, 74.7, 72.5 (C2, C3, C5, C2′, C3′, C5′); 71.5, Gal′), 72.3, 72.1 (C2-Gal′), 70.6 (Glc β-COCH2), 70.4 (C2-Gal),
71.4, 71.3, 70.9, 70.6, 70.4 (OCH2, β-COCH2,); 70.3 (C4′); 62.5, 70.4–68.5 (–OCH2–), 68.4 (C4-GalNAc), 67.8, 62.7, 60.9, 60.8,
61.9 (C6, C6′); 61.5 (ArOCH3); 51.4 (OCH2CH2-triazole); 41.0 60.4, 60.0, 51.4, 51.0 (C2 GalNAc), 49.8, 39.5, 36.7, 28.8–28.3
(C(O)NHCH2); 32.0 (ArCH2Ar); 30.8, 30.6, 30.5, 30.4, 30.2, 27.1 (CH2CH2CH2), 25.0 (Glc β-COCH2CH2), 24.5 (CH2-triazole),
(CH2 aliphatic chain); 26.2 (triazole-CH2CH2CH2). HR-ESI-MS 22.5 (NHC(O)CH3-GalNAc), 21.9 (NH(O)CH3-Neu5Ac); HR-ESI-
(+) m/z: 1575.1475 [100% (M + 3H)3+] calcd: 1575.1481.
MS(−) m/z: 1587.7009 [100% (M − H)−] calcd: 1587.7034.
CTB5 inhibition assays
17-Azide-3,6,9,12,15-pentaoxaheptadecane-1-aminocarbonyl-p-
methoxybenzene (19)
Each well of a 96-well microtiter plate was coated with a 100 μL
native GM1 solution (1.3 μM in ethanol) after which the
solvent was evaporated. Unattached GM1 was removed by
washing with PBS (3 × 450 μL), the remaining free binding
sites were blocked by incubation with 100 μL of a 1% (w/v) BSA
solution in PBS for 30 min at 37 °C. Detection limits were
determined by placing a CT-horseradish peroxidase conjugate
(CT-HRP), without inhibitor, on the plate, which gives the
highest response, and the lowest response was determined by
the optical density of the blank, i.e. the native GM1-coated well
with all components except the inhibitor and the toxin. These
two values represent the minimum and the maximum values
of optical density, 0% and 100% of binding of the CT to the
GM1-coating of the wells. Subsequently, the wells were washed
with PBS (3 × 450 μL). In separate vials, a logarithmic serial
dilution was performed that started from 2.0 mM of 150 μL
saccharide-calixarenes in 0.1% BSA and 0.05% Tween-20 in
PBS. Next, each vial was mixed and incubated with 150 μL of a
50 ng mL−1 CTB-HRP solution in the same buffer. This gave
an initial inhibitor concentration of 1.0 mM. In the case of
potent inhibitors, based on the logarithmic experiments, a
more accurate, serial dilution of a factor two was performed
around the expected IC50-values. The inhibitor–toxin mixtures
were incubated at room temperature for 2 h and then trans-
ferred to the coated wells. After 30 min of incubation at room
temperature, unbound CTB-HRP-calixarene complexes were
removed from the wells by washing with 0.1% BSA, 0.05%
Tween-20 in PBS (3 × 500 μL). 100 μL of a freshly prepared OPD
solution (25 mg OPD·2HCl, 7.5 mL 0.1 M citric acid, 7.5 mL
0.1 M sodium citrate and 6 μL of a 30% H2O2 solution, pH was
adjusted to 6.0 with NaOH) was added to each well and
allowed to react with HRP in the absence of light, at room
temperature, for 15 minutes. The oxidation reaction was
quenched by addition of 50 μL 1 M H2SO4. Within 5 min, the
absorbance was measured at 490 nm.
Oxalyl chloride (1.5 mL, 16.0 mmol) was added to a solution of
4-methoxybenzoic acid (0.30 g, 2.0 mmol) in 15 mL of dry
CH2Cl2 and the mixture was stirred at room temperature under
N2 for 18 h. The solvent was then removed under vacuum and
the residue dissolved again in 5 mL of dry CH2Cl2. This solu-
tion was added dropwise to a round bottomed flask containing
the azidoamine compound 7 (0.91 g, 3.0 mmol) and NEt3
(0.5 mL, 3.0 mmol) in 10 mL of dry CH2Cl2. The mixture was
let to react for 20 h at room temperature under an N2 atmos-
phere. The reaction was monitored via TLC (eluent: AcOEt). A
1 M HCl solution (20 mL) was then added to quench the reac-
tion, and the product extracted with CH2Cl2 (2 × 20 mL). The
combined organic phases were washed with NaHCO3 saturated
aqueous solution (15 mL), brine (15 mL), water (15 mL), dried
over anhydrous Na2SO4, filtered and the solvent evaporated
under reduced pressure. The crude was purified by flash
chromatography (eluent: AcOEt–acetone 9 : 1). Product 19 was
1
obtained pure as a yellow oil. Yield: 20%. H NMR (300 MHz,
CDCl3): δ (ppm) 7.74 (d, 2H, J = 8.9 Hz, Ar-meta); 6.87 (d, 2H,
J = 8.9 Hz, Ar-ortho); 6.78 (bs, 1H, C(O)NH); 3.80 (s, 3H, OCH3);
3.65–3.54 (m, 22H, OCH2, C(O)NHCH2); 3.32 (t, 2H, J = 5.0 Hz,
CH2N3). 13C NMR (75 MHz, CDCl3): δ ppm 167.0 (Ac); 162.0
(Ar-ipso); 128.8 (Ar-meta); 126.9 (Ar-para); 113.6 (Ar-ortho); 70.6,
70.5, 70.2, 70.0, 69.9 (OCH2); 55.4 (OCH3); 50.6 (CH2N3); 39.7
(C(O)NHCH2). ESI-MS(+) m/z: 463.0 [100% (M + Na)+]; 435.0
[60% (M − N2 + Na)+].
GM1os-monomer (20)
Starting from compounds 19 and 9, following the same pro-
cedure as for compound 1, and using reversed phase column
chromatography for the purification (gradient MeOH–H2O–
AcOH), monomer 20 was obtained as a white solid in 49%
1
yield. H NMR (400 MHz, D2O): δ (ppm) 7.81 (3H, m, triazole,
Ar), 6.98 (2H, d, J = 8.4 Hz, Ar), 4.71 (1H, s, H1-GalNAc), 4.39
(1H, d, J = 8.4 Hz, H1-Gal′), 4.42 (1H, m, H1-Gal), 4.38 (1H, m),
4.31, (1H, d, J = 8.2 Hz, H1-Glc), 4.05–4.01 (3H, m), 3.93 (1H,
m, H2-GalNAc), 3.75–3.40 (21H, m) , 3.60–3.47 (16H, m),
Acknowledgements
3.36–3.28 (14H, m), 3.25 (1H, m, H2-Gal), 3.18 (1H, m, H2- This work is co-financed by the INTERREG IV A Germany-
Glc), 3.10 (2H, s), 2.54 (1H, m, H3a-Neu5Ac), 2.35 (2H, m, CH2- Netherlands programme through the EU funding from the
triazole), 1.92 (3H, s, NHC(O)CH3-Neu5Ac), 1.85 (3H, s, NHC- European Regional Development Fund (ERDF), the Ministry for
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Org. Biomol. Chem.