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MedChemComm
Page 6 of 8
DOI: 10.1039/C7MD00029D
ARTICLE
Journal Name
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performed in 50 mM pH 7.2 HEPES buffer with 0.05 μg/μL final
protein concentration hDAGLα transfected protein.
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Kruse, H. S. Overkleeft, T. Hankemeier, T. R. Werkman, B. F.
Natural substrate based fluorescence assay (ABHD6).
The natural substrate assay was performed as reported
previously14,33. Standard assay conditions: 25 µM 2-AG, 0.2
U/mL glycerol kinase (GK), glycerol-3-phosphate oxidase (GPO)
and horseradish peroxidase (HRP), 0.125 mM ATP, 10 µM
Amplifu™Red, 5% DMSO and 0.5% acetonitrile in a total
volume of 200 µL. The final protein (ABHD6) concentration is
40 µg/mL.
Preparation of mouse brain membrane proteome
Mouse brain membrane proteome preparation was performed
as previously reported15,31. In brief, mouse brains were
isolated according to guidelines approved by the ethical
committee of Leiden University (DEC#10095). Mouse brains
were Dounce homogenized in pH 7.2 lysis buffer A (20 mM
HEPES pH 7.2, 2 mM DTT, 1 mM MgCl2, 25 U/mL Benzonase)
and incubated for 5 min on ice, followed by low speed spin
(2,500 × g, 3 min, 4 oC) to remove debris. The supernatant was
subjected to ultracentrifugation (100,000 × g, 45 min, 4 oC,
Beckman Coulter, Type Ti70 rotor) to yield the cytosolic
fraction in the supernatant and the membrane fraction as a
pellet. The pellet was resuspended in storage buffer B (20 mM
HEPES pH 7.2, 2 mM DTT). The total protein concentration was
determined with Quick Start Bradford reagent (Bio-Rad) or
QubitTM fluorometric quantitation (Life Technologies).
Membranes and supernatant were flash frozen in liquid
nitrogen and stored in aliquots at -80 oC until use.
Cravatt and M. van der Stelt, J. Am. Chem. Soc., 2015, 137
,
8851-8857.
Activity based protein profiling in mouse brain
13. F. J. Janssen, M. P. Baggelaar, J. J. A. Hummel, H. S. Overkleeft,
B. F. Cravatt, D. L. Boger and M. van der Stelt, J. Med. Chem.,
2015, 58, 9742-9753.
14. F. J. Janssen, H. Deng, M. P. Baggelaar, M. Allara, T. van der
Wel, H. den Dulk, A. Ligresti, A. C. van Esbroeck, R. McGuire, V.
Di Marzo, H. S. Overkleeft and M. van der Stelt, J. Med. Chem.,
2014, 57, 6610-6622.
15. D. Ogasawara, H. Deng, A. Viader, M. P. Baggelaar, A. Breman,
H. den Dulk, A. M. van den Nieuwendijk, M. Soethoudt, T. van
der Wel, J. Zhou, H. S. Overkleeft, M. Sanchez-Alavez, S. Mo,
W. Nguyen, B. Conti, X. Liu, Y. Chen, Q. S. Liu, B. F. Cravatt and
M. van der Stelt, Proc. Natl. Acad. Sci. USA, 2016, 113, 26-33.
16. W. R. Marrs, J. L. Blankman, E. A. Horne, A. Thomazeau, Y. H.
Lin, J. Coy, A. L. Bodor, G. G. Muccioli, S. S. J. Hu, G. Woodruff,
S. Fung, M. Lafourcade, J. P. Alexander, J. Z. Long, W. W. Li, C.
Xu, T. Moller, K. Mackie, O. J. Manzoni, B. F. Cravatt and N.
Stella, Nat. Neurosci., 2010, 13, 951-967.
Mouse brain proteome (2 mg/mL, 19.5 µL) was incubated with
DMSO or inhibitor in 0.5 µL DMSO for 30 min at r.t. and
subsequently incubated with 500 nM (final concentration) ABP
TAMRA-FP for 20 min at r.t. before the reaction was quenched
with standard 3x Laemmli sample buffer. The gels were
scanned using a ChemiDoc MP system and analyzed using
Image Lab 4.1.
Acknowledgements
This work was supported by grants from the Chinese
Scholarship Council (to H.D.); the Netherlands Research
Council– Chemical Sciences ECHO grant (to M.v.d.S.); and an
ECHO-STIP Grant (M.v.d.S.).
17. M. A. Pribasnig, I. Mrak, G. F. Grabner, U. Taschler, O.
Knittelfelder, B. Scherz, T. O. Eichmann, C. Heier, L. Grumet, J.
Kowaliuk, M. Romauch, S. Holler, F. Anderl, H. Wolinski, A.
Lass, R. Breinbauer, G. Marsche, J. M. Brown and R.
Zimmermann, J. Bio. Chem., 2015, 290, 29869-29881.
18. G. Thomas, J. L. Betters, C. C. Lord, A. L. Brown, S. Marshall, D.
Ferguson, J. Sawyer, M. A. Davis, J. T. Melchior, L. C. Blume, A.
C. Howlett, P. T. Ivanova, S. B. Milne, D. S. Myers, I. Mrak, V.
Leber, C. Heier, U. Taschler, J. L. Blankman, B. F. Cravatt, R. G.
Lee, R. M. Crooke, M. J. Graham, R. Zimmermann, H. A. Brown
Notes
The authors declare no competing interest.
Notes and references
1. T. Bisogno, F. Howell, G. Williams, A. Minassi, M. G. Cascio, A.
Ligresti, I. Matias, A. Schiano-Moriello, P. Paul, E. J. Williams, U.
Gangadharan, C. Hobbs, V. Di Marzo and P. Doherty, The J. Cell
Biol., 2003, 163, 463-468.
and J. M. Brown, Cell Rep., 2013, 5, 508-520.
2. M. Reisenberg, P. K. Singh, G. Williams and P. Doherty, Phil.
Trans. R. Soc. B, 2012, 367, 3264-3275.
6 | J. Name., 2012, 00, 1-3
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