11634 J. Am. Chem. Soc., Vol. 122, No. 47, 2000
Randall et al.
hydrogen atoms were in idealized positions with riding thermal
parameters. Full-matrix least squares refinement on F2 converged with
R1 ) 0.0295, wR2 ) 0.0727, GOF ) 1.033 for 4760 independent
reflections (I > 2σ(I)) and 382 parameters.
2.5. X-ray Absorption Spectroscopy Measurements and Data
Analysis. All data were measured at the Stanford Synchrotron Radiation
Laboratory under ring conditions 3.0 GeV and 60-100 mA.
S K-edge data were measured using the 54-pole wiggler beam line
6-2 in high magnetic field mode of 10 kG with a Ni-coated harmonic
rejection mirror and fully tuned Si(111) double crystal monochromator.
Details of the optimization of this setup for low-energy studies have
been described in an earlier publication.34 S K-edge measurements were
made at room temperature. Samples were ground into a fine powder
and dispersed as thinly as possible on Mylar tape to minimize the
possibility of self-absorption. The data were measured as fluorescence
excitation spectra utilizing an ionization chamber as a fluorescence
detector.35,36 To check for reproducibility, 2-3 scans were measured
for each solid sample. The energy was calibrated from S K-edge spectra
of Na2S2O3‚5H2O, run at intervals between sample scans. The maximum
of the first preedge feature in the spectrum was assigned to 2472.02
eV. Data were averaged, and a smooth background was removed from
all spectra by fitting a polynomial to the preedge region and subtracting
this polynomial from the entire spectrum. Normalization of the data
was accomplished by fitting a flattened polynomial or straight line to
the postedge region and normalizing the edge jump to 1.0 at 2490 eV.
Fits to the edges were performed using the program EDG_FIT.37 Second
derivative spectra were used as guides to determine the number and
position of peaks. Preedge and rising edge features were modeled by
pseudo-Voigt line shapes. For the preedge feature, a fixed 1:1 ratio of
Lorentzian to Gaussian contributions was used. Fits were performed
over several energy ranges. The reported intensity values and standard
deviations are based on the average of all good fits. Normalization
procedures can introduce ∼3% error in preedge peak intensities, in
addition to the error resulting from the fitting procedure.
Cu L-edge data were measured using the 31-pole wiggler beam line
10-1. Samples were finely ground and spread across double-adhesive
conductive carbon tape, which was attached to an aluminum paddle.
The data were measured at room temperature as total electron yield
spectra utilizing a Galileo 4716 channeltron electron multiplier as a
detector. For each sample, 3-4 scans were measured to check
reproducibility. The energy was calibrated from the Cu L-edge spectra
of CuF2, run at intervals between sample scans. The maximum of the
L3 and L2 preedges were assigned to 930.5 and 950.5 eV, respectively.
A linear background was fit to the preedge region (870-920 eV) and
was subtracted from the entire spectrum. Normalization was ac-
complished by fitting a straight line to the postedge region and
normalizing the edge jump to 1.0 at 1000 eV. Fits to the edges were
performed using EDG_FIT.37 A pseudo-Voigt peak was used to model
the L3 and L2 2p f 3d transitions. Arctangent functions were used to
model the L3 and L2 edge jumps. The total L-preedge intensity reported
here was calculated as L3 + L2. The reported intensity values and
standard deviations are based on the average of all good fits.
Normalization procedures can introduce ∼4% error in preedge peak
intensities, in addition to the error resulting from the fitting procedure.
2.6. Calculations. Density functional theory (DFT) calculations were
performed using the Amsterdam Density Functional package of
Baerends and co-workers (ADF 2.0.1) using the database IV basis
set.38,39 The Vosko, Wilk, Nusair local density approximation40 was
used for exchange and correlation, respectively. Generalized gradient
2.1.2. Sulfur-34 Labeling. Preparation of 34S-enriched 2,6-dimeth-
ylphenylthiol was accomplished by addition of solid sulfur-34 (45 mg,
1.3 mmol, 77% atomic enrichment, Cambridge Isotopes) to a solution
of 2,6-dimethylphenyl magnesium bromide (1.0 mL, 1.0 M in THF,
Aldrich) at room temperature. This solution was stirred under nitrogen
for 3 h, and then lithium aluminum hydride (∼0.1 g) was added, causing
the pale yellow color to fade. The reaction was quenched with saturated
NH4Cl (50 mL), and the aqueous layer was extracted with three portions
of 25 mL of diethyl ether. The combined organic layers were dried
over MgSO4, reduced to an oil, and distilled at 45 °C (0.1 mmHg) to
yield a sample of labeled 2,6-dimethylphenylthiol that was used to make
the sodium salt (as described above) without further manipulation.
Synthesis of isotopically labeled complex 3 was accomplished using
procedures similar to those described above.
2.2. UV-Vis Absorption and MCD. Room-temperature absorption
spectra were recorded in heptane, pentane, or toluene on a HP8453
diode-array spectrophotometer. Low-temperature UV-vis absorption
spectra were recorded at ∼10 K using either a Cary 500 or Cary 17
equipped with a Janis Supervaritemp dewar. MCD spectra were
recorded using Jasco J500 (or J810, UV-visible, PMT detection) and
J200 (near-IR, liquid nitrogen-cooled InSb solid-state detection) spec-
tropolarimeters modified to include Oxford SM-4 (7 T, UV-vis) or
SM-4000 (7 T, near-IR) superconducting magnets with optical access
within their sample compartments. Special care was taken to provide
magnetic shielding for the PMT detector. For low temperature MCD
experiments, solid samples (mulls) that were prepared by finely grinding
microcrystalline material into powders with a mortar and pestle and
then adding mulling agents (poly(dimethylsiloxane) (Aldrich) or
Fluorolube (Wilmad)) were uniformly spread between quartz disks
(Heraeus-Amersil) and loaded into copper MCD cells and promptly
frozen in liquid nitrogen.
2.4. Raman and Resonance Raman Enhancement Profiles. In
initial rR spectra and sulfur-34 labeling experiments performed at
Minnesota, resonance Raman spectra were collected on an Acton 506
spectrometer using a Princeton Instruments LN2/CCD-1100-PB/UVAR
detector and ST-1385 controller, equipped with a 1200 grooves/mm
holographic grating, interfaced with Winspec software. A grating with
2400 grooves/mm was used for confirmation of the small 34S isotope
shifts, and the shifts reported here are deemed accurate to 1 cm-1. A
Spectra-Physics 2030-15 Ar ion laser at a power of 4 W was employed
to pump a 375B CW dye (Rhodamine 6G) laser at 632.8 nm. Solutions
(∼50 mM, d6-benzene) were frozen onto a gold-plated copper coldfinger
in thermal contact with a dewar containing liquid nitrogen. The spectra
were obtained at 77 K using a 135° backscattering geometry. Raman
shifts were referenced externally through a quadratic fit to the known
spectrum of indene at room temperature.27
At Stanford, (resonance) Raman spectra were recorded using a
Princeton Instruments, liquid nitrogen cooled, back-illuminated CCD
camera mounted on a Spex 1877 0.6 m triple spectrometer, equipped
with 1200, 1800, or 2400 grooves/mm holographic gratings. Continuous
wave Coherent Kr ion (Innova 90C-K) and Ar ion (Sabre-25/7) visible
and UV laser lines were used for variable-energy excitation. A
polarization scrambler was placed in front of the entrance slits of the
spectrometer. Samples were loaded in 5-mm (o.d.) NMR tubes
immersed in liquid nitrogen, and spectra were obtained in a ∼135°
backscattering geometry with ∼40 mW incident power. Raman
scattering resolution and accuracy is ∼2 cm-1. Raman peak profile
intensities were determined relative to normal Raman scattering of
solvent peaks. Resonance Raman enhancement profiles (RREPs) were
simulated using the time-dependent theory of Heller, et al.28-32 that
was implemented in a MathCAD script.33 The parameters of the fits
were adjusted until the simulated spectra reasonably matched the
experimental data. The same set of parameters was used to simulate
both the resonance Raman enhancement profile and the absorption
spectrum.
(28) Heller, E. J. Acc. Chem. Res. 1981, 14, 368-375.
(29) Heller, E. J.; Sundberg, R. L.; Tannor, D. J. Phys. Chem. 1982, 86,
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(30) Myers, A. B.; Mathies, R. A. In Biological Applications of Raman
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(33) Brunold, T. C.; Tamura, N.; Kitajima, N.; Moro-oka, Y.; Solomon,
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(36) Lytle, F. W.; Greegor, R. B.; Sandstrom, D. R.; Marques, E. C.;
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(37) George, G. N. EDG_FIT; Stanford Synchrotron Radiation Labora-
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