5268 J ournal of Medicinal Chemistry, 2003, Vol. 46, No. 24
Cogan and Koch
nil-2), 12.30 (1H, s, 2-OH); m/z 514.1469 [M+] (calculated for
separatory funnel where it was washed 3× with 40 mL
portions of saturated brine containing 5% NaH2PO4. The
organic layer was collected, dried over anhydrous magnesium
sulfate, and rotary evaporated free of solvent at 40 °C to give
a pale brown oil. This residue was dissolved in 10 mL of ethyl
acetate and introduced to a silica gel flash column (20 cm × 2
cm) packed in the 100% ethyl acetate. Elution with 78% ethyl
acetate/20% methanol/2% triethylamine followed by removal
of the solvent by rotary evaporation at 40 °C gave a pale golden
oil. Further purification by preparatory HPLC using 20 mM
pH 4.0 TEAA buffer was required and yielded 121 mg (71%)
of 12a as a clear, colorless oil: 1H NMR (500 MHz, CDCl3) δ
1.49-1.60 (2H, m, (CH2)2NCH2CH2), 1.52 (6H, s, 5-(CH3)2),
1.67-1.76 (2H, m, CH2CH2NCO), 2.37 (2H, t, J ) 7 Hz, (CH2)2-
NCH2CH2), 2.49 (8H, bs, N(CH2CH2)2N), 2.61 (2H, t, J ) 6
Hz, BnOCH2CH2N) 3.36 (2H, t, J ) 8 Hz, CH2NCO), 3.56 (2H,
t, J ) 6 Hz, BnOCH2), 4.42 (2H, s, Bn), 6.23 (1H, bs, NH),
6.87 (1H, bs, NH), 6.91 (1H, d, J ) 8 Hz, sal-3), 7.32 (1H, d, J
) 8 Hz, sal-4), 7.48 (1H, s, sal-6), 7.90 (1H, d, J ) 9 Hz, nil-5),
7.99 (1H, dd, J ) 9, 2 Hz, nil-6), 8.14 (1H, d, J ) 2 Hz, nil-2);
m/z 631.2833 [MH+] (calculated for 631.2856).
514.1464); anal. (C25H21F3N4O5) C, H, N.
5-(2-Br om oeth oxym eth yl)-2-h yd r oxyben za m id e (9). A
solution of 150 mg (0.91 mmol) of 3 was prepared in 12 mL of
2-bromoethanol by heating a stirring mixture of the two to 55
°C under an argon atmosphere. The solution was then allowed
to cool for 5 min at room temperature before 56 mg (0.46 mmol)
of decaborane was added. Excessive evolution of H2 was
observed for 5 min, after which time the reaction was again
heated to 55 °C. After being stirred for 4 h, the solvent was
removed by rotary evaporation at 40 °C and 100 µmHg. The
residue was dissolved in 8 mL of ethyl acetate and introduced
to a silica gel flash column (30 cm × 2 cm) packed in 25%
hexanes/75% ethyl acetate. Elution with the same solvent
system yielded 175 mg (70%) of 9 as a clear, colorless oil: 1H
NMR (500 MHz, (CD3)2CO) δ 3.55 (2H, t, J ) 6 Hz, OCH2-
CH2Br), 3.76 (2H, t, J ) 6 Hz, OCH2CH2Br), 4.47 (2H, s, Bn),
6.89 (1H, d, J ) 8 Hz, 3), 7.19 (1H, bs, NH), 7.44 (1H, dd, J )
8, 2 Hz, 4), 7.81 (1H, d, J ) 2 Hz, 6), 7.97 (1H, bs, NH), 12.93
(1H, s, 2-OH); m/z 273.007 [M+] (calculated for 273.001).
4-[3-(4-Br om o-bu tyl)-4,4-d im eth yl-2,5-d ioxo-im id a zoli-
d in -1-yl]-2-tr iflu or om eth ylben zon itr ile (10a ). To a stirring
solution of 306 mg (1.0 mmol) of 2f in 3.0 mL of DMF was
added 49 mg (1.2 mmol) of sodium hydride (60% in oil). The
resulting suspension was stirred at room temperature for 1.5
h at which time evolution of H2 had ceased and a yellow
solution persisted. To this solution was added 1.0 mL of 1,4-
dibromobutane, and the resulting reaction mixture was heated
under an argon atmosphere to 60 °C for 0.5 h. At this time,
the reaction mixture was added dropwise to 100 mL of
saturated brine containing 5% NaH2PO4. A pale yellow pre-
cipitate was formed which was extracted into 250 mL of ethyl
acetate. The organic layer was washed 2× with saturated
brine, collected, and rotary evaporated at 40 °C to a yellow
solution in DMF. Further rotary evaporation at 50 °C and 100
µmHg removed the DMF to yield a yellow oil. This crude
product was dissolved in 10 mL of 50% hexanes/50% ethyl
acetate and introduced to a silica gel flash column (30 cm × 2
cm) packed in 75% hexanes/25% ethyl acetate. Elution with
75% hexanes/25% ethyl acetate followed by removal of solvent
by rotary evaporation at 40 °C gave 378 mg (85%) of 10a as a
clear, colorless oil: 1H NMR (500 MHz, CDCl3) δ 1.54 (6H, s,
4-(CH3)2), 1.82-1.98 (2H, m, CH2CH2N), 1.82-1.98 (2H, m,
BrCH2CH2), 3.36-3.42 (2H, m, CH2CH2N), 3.43-3.49 (2H, m,
BrCH2CH2), 7.90 (1H, d, J ) 8 Hz, 6), 7.99 (1H, dd, J ) 8, 2
Hz, 5), 8.14 (1H, d, J ) 2 Hz, 3); m/z 431.0450 [M+] (calculated
for 431.0456).
4-{3-[2-(2-Br om oeth oxy)eth yl]-4,4-d im eth yl-2,5-d ioxo-
im id a zolid in -1-yl}-2-tr iflu or om eth ylben zon itr ile (10b).
10b was prepared as 10a in 82% yield: 1H NMR (500 MHz,
CDCl3) δ 1.55 (6H, s, 4-(CH3)2), 3.47 (2H, m, OCH2CH2N), 3.56
(2H, m, OCH2CH2N), 3.76, (2H, m, BrCH2CH2O), 3.81 (2H,
m, BrCH2CH2O), 7.91 (1H, d, J ) 9 Hz, 6), 8.00 (1H, dd, J )
9, 2 Hz, 5), 8.14 (1H, d, J ) 2 Hz, 3); m/z 447.0405 [M+]
(calculated for 447.0405).
4-{4,4-Dim e t h yl-2,5-d ioxo-3-[2-(2-p ip e r a zin -1-yle t h -
oxy)et h oxy]im id a zolid in -1-yl}-2-t r iflu or om et h ylben zo-
n itr ile (11b). 11b was prepared as 11a in 59% yield: 1H NMR
(500 MHz, CDCl3) δ 1.48 (6H, s, 4-(CH3)2), 2.45-2.60 (4H, bm,
(CH2)2NCH2), 2.51-2.56 (2H, m, (CH2)2NCH2), 2.86-2.98 (4H,
bm, HN(CH2)2), 3.46-3.53 (2H, m, CH2OCH2), 3.55 (2H, t, J
) 6 Hz, CH2NCO), 3.61-3.66 (2H, m, CH2OCH2), 5.20 (1H,
bs, NH), 7.87 (1H, d, J ) 8 Hz, 6), 7.95 (1H, dd, J ) 8, 2 Hz,
5), 8.09 (1H, d, J ) 2 Hz, 3); m/z 452.1897 [M-H] (calculated
for 452.1909).
5-{2-[4-(2-{2-[3-(4-Cya n o-3-tr iflu or om eth yl-p h en yl)-5,5-
d i m e t h y l -2 ,4 -d i o x o -i m i d a z o l i d i n -1 -y l ] e t h o x y }-
et h ylp ip er a zin e-1-yl]et h oxym et h yl}-2-h yd r oxyb en za -
m id e (12b). 12b was prepared as 12a in 83% yield: 1H NMR
(500 MHz, CDCl3) δ 1.53 (6H, s, 5-(CH3)2), 2.45-2.68 (8H, bm,
N(CH2CH2)2N), 2.54-2.61 (2H, m, (CH2)2NCH2CH2O), 2.63-
2.90 (2H, m, BnOCH2CH2N), 3.50-3.63 (6H, m, BnOCH2, CH2-
OCH2CH2NCO), 3.65-3.71 (2H, m, OCH2CH2NCO), 4.43 (2H,
s, Bn), 6.13 (1H, bs, NH), 6.92 (1H, d, J ) 8 Hz, sal-3), 7.31
(1H, dd, J ) 8, 2 Hz, sal-4), 7.57 (1H, d, J ) 2 Hz, sal-6), 7.90
(1H, d, J ) 8 Hz, nil-5), 8.00 (1H, dd, J ) 8, 2 Hz, nil-6), 8.14
(1H, d, J ) 2 Hz, nil-2); m/z 647.2816 [MH+] (calculated for
647.2805).
N-(5-{4-[3-(4-Cya n o-3-t r iflu or om et h ylp h en yl)-5,5-d i-
m et h yl-2,4-d ioxo-im id a zolid in -1-yl]bu t -2-yn yloxym et h -
yl)-2-h yd r oxyben za m id om eth yl)d oxor u bicin (13). To a
stirring solution of 20 mg of 8c (0.04 mmol) in 2.0 mL of DMF
was added 10 µL of a 37% formalin solution (0.13 mmol). The
reaction was stirred in a screw top vial for 15 min at 55 °C, at
which time 20 mg (0.03 mmol) of doxorubicin hydrochloride
was added to form a red suspension which was stirred at 55
°C. After 15 min, a clear red solution had formed and the
reaction was removed from the heat. Transfer of the solution
to a 250 mL round-bottom flask, followed by rotary evaporation
of the solvent at 55 °C and 50 µmHg gave a red film which
was readily dissolved in 20 mL of methanol containing 30% of
20 mM pH 1.9 1% TFA. After 10 min at room temperature,
the methanol was removed by rotary evaporation at 30 °C,
and the resulting aqueous suspension was diluted to 100 mL
with saturated brine and transferred to a separatory funnel.
Extraction into 50 mL of chloroform followed by addition of 1
mL of glacial acetic acid and rotary evaporation at 30 °C gave
a red film. The product was then dissolved in 1-2 mL of
methanol and filtered through a 0.45 µm Spin-X centrifuge
filter. Purification was achieved by preparative HPLC using
a pH 3.5 TEAA buffer as the aqueous eluent. Pure material
was collected into a test tube (100 mm × 10 mm) containing
0.5 mL of 1.0 M HCl. Acetonitrile was removed by rotary
evaporation at 30 °C to yield an aqueous suspension of the
pure product which was diluted to 50 mL with saturated brine
and transferred to a separatory funnel. Extraction into 50 mL
of chloroform followed by addition of 1 mL of glacial acetic acid
and rotary evaporation at 30 °C gave 23 mg (60%) of 13 as
the acetate salt: 1H NMR (500 MHz, (CD3)2CO) δ 1.32 (3H, d,
J ) 6 Hz, dox-5′-CH3), 1.62 (6H, s, 5-(CH3)2), 2.15-2.30 (3H,
m, 2(dox-2′), dox-8), 2.42 (1H, d, J ) 14 Hz, dox-8), 2.93 (1H,
d, J ) 18 Hz, dox-10), 3.12 (1H, J ) 18 Hz, dox-10), 3.85-4.0
(1H, bm, dox-3′), 4.06 (3H, s, dox-4-OCH3), 4.12 (3H, s, dox-
9OH, CCH2NCO), 4.38 (5H, s, dox-5′, Bn, BnOCH2C), 4.62-
4.78 (2H, m, dox-14), 4.91 (1H, bs, NCH2N), 5.03 (1H, bs,
NCH2N), 5.21 (1H, s, dox-7), 5.56 (1H, s, dox-1′), 6.71 (1H, d,
J ) 8 Hz, sal-3), 7.29 (1H, d, J ) 8 Hz, sal-4), 7.63 (1H, d, J
) 8 Hz, dox-3), 7.74 (1H, bs, sal-6), 7.90 (1H, t, J ) 8 Hz, dox-
5-[2-(4-{4-[3-(4-Cya n o-3-t r iflu or om et h yl-p h en yl)-5,5-
d im eth yl-2,4-d ioxo-im id a zolid in -1-yl]bu tyl}p ip er a zin -1-
yl)eth oxym eth yl]-2-h yd r oxyben za m id e (12a ). To a stir-
ring solution of 120 mg (0.27 mmol) of 11a and 80 mg (0.29
mmol) of 9 in 2.0 mL of THF was added 100 µL (0.72 mmol) of
triethylamine. The resulting solution was refluxed under an
argon atmosphere for 20 h, at which time the solvent was
removed by rotary evaporation at 40 °C. The residue was
dissolved in 250 mL of ethyl acetate and transferred to a