Supramolecular organization of clathrochelate
Russ.Chem.Bull., Int.Ed., Vol. 53, No. 7, July, 2004
1501
Table 5. Shortest intermolecular contacts (d) in the crystal strucꢀ
tures of compounds 1—3
Bond
d/Å
Bond
Structure 3
d/Å
Structure 1
C(l1s)...O(1b)
C(l1s)...C(8а)
C(l1s)...C(9а)
C(l1s)...C(19b)
C(l1s)...C(24b)
C(l1s)...H(18c)
C(l1s)...H(8aa)
C(l1s)...H(9ba)
3.311
3.418
3.500
3.386
3.293
2.76
С(5s)...C(16b)
C(5s)...C(26c)
С(5s)...C(36c)
C(4s)...C(7´)
C(4s)...C(8´)
C(4s)...C(34c)
C(3s)...C(9´)
C(3s)...C(30c)
C(3s)...C(33c)
C(3s)...C(34c)
C(2s)...C(8)
3.789
3.803
3.734
3.802
3.838
3.574
3.762
3.744
3.565
3.627
3.378
3.251
3.624
2.76
2.96
Structure 2
N(1sa)...C(8c)
N(1sa)...C(9c)
N(1sa)...C(13а)
N(1sa)...C(18a)
3.322
3.463
3.360
3.151
C(2s)...C(9´)
C(2s)...C(33a)
ellipsoid (C(36c)...C(36d), 17.77 Å) is 14.17 Å, and two
other axes are 4.9 and 3.7 Å. The length of the solvate
fragment is 11.26 Å (C(5s)...C(5sa) distance), whereas
the length of the hexane chain is ~7.5 Å.
3
A comparative analysis of the volume of the solvate
molecule and the elliptical cavity occupied by the solvate
molecules (taking into account the van der Waals radius
of the carbon atom) shows (see Table 4) that these caviꢀ
ties in all structures studied are accessible for the solvate
molecules (particularly, in the structure of 2). As a result,
the solvate molecules are disordered about the center of
symmetry.
Fig. 5. Schematic representation of the location of the nꢀhexane
solvate molecules in the cavities of the crystal structure of 3.
Therefore, the cavity size in the crystal structure is comꢀ
parable to the volume of the solvate molecule, whereas
the volume of the CHCl3 molecule is substantially smaller.
Presumably, that is the reason why the CHCl3 solvate
molecules are disordered in the crystal.
In the crystal sructure of 2, the cavity is formed by the
atoms of six Ph rings and two allyl groups of two clathroꢀ
chelate molecules. Unlike the structure of 1, the long axis
of the ellipsoid (10.12 Å) is formed by the carbon atoms
of the allylsulfide substituents (C(13) and C(13a)), and
two other axes (7.02 and 8.71 Å) are formed by the atoms
of the Ph rings. The volume of the cavity is 37.6 Å3,
whereas the volume of the CH3CN molecule approxiꢀ
mates 22 Å3. As a result, the CH3CN molecule is disorꢀ
dered over four positions.
In the structure of 3, the cavity is more elongated (see
Fig. 5). This cavity is formed by six "host" molecules, viz.,
the carbon atoms of twelve Ph and four allylsulfide subꢀ
stituents (two of them are disordered). No shortened conꢀ
tacts between the atoms of the solvent and the clathroꢀ
chelate framework were revealed. The hexane molecule is
also disordered about the center of symmetry, which coꢀ
incides with the midpoint of the C(1s)—C(1sa) bond, i.e.,
the solvate fragment is a tenꢀatom planar aliphatic chain,
which is extended along the long axis of the cavity and
oriented so that its plane is parallel to the plane of the
C(31)—C(36) and C(31a)—C(36a) rings. Taking into acꢀ
count the van der Waals radius of the carbon atoms, the
volume of the cavity is 75.8 Å3. The long axis of the
The character of packing of the bulky clathrochelate
molecules and smaller solvate molecules in crystals 1—3
is determined, apparently, not only by the volume and
shape of the solvate molecule but also by its polarity. The
chlorine and nitrogen atoms are involved in specific diꢀ
poleꢀdipole interactions between atoms of the "host" and
"guest" molecules. This is, in particular, reflected in
the densities of the crystal structures. Thus, dcalc for
crystals 1 and 2 are substantially higher than that for crysꢀ
tal 3; the larger value of dcalc for solvate 1 compared to
dcalc for solvate 2 also correlates with the larger number
of shortened intermolecular contacts in crystal 1 (see
Table 4).
Therefore, weak intermolecular interactions between
the clathrochelate "host" molecules provide the possibilꢀ
ity of using solvate "guest" molecules for the desired
changes in the supramolecular organization of the crystals
of these complexes. The hiearhical architecture of the
crystals is determined by the electronic properties of the
solvate molecule rather than by its geometric parameters.
This conclusion can be extended to the polymorphism of
molecules containing polar groups: even weak intermoꢀ
lecular contacts involving these groups might play a key
role in the crystal packing of these molecules.