
Journal of Medicinal Chemistry p. 3935 - 3952 (2016)
Update date:2022-08-15
Topics:
Yokokawa, Fumiaki
Nilar, Shahul
Noble, Christian G.
Lim, Siew Pheng
Rao, Ranga
Tania, Stefani
Wang, Gang
Lee, Gladys
Hunziker, Jürg
Karuna, Ratna
Manjunatha, Ujjini
Shi, Pei-Yong
Smith, Paul W.
The discovery and optimization of non-nucleoside dengue viral RNA-dependent-RNA polymerase (RdRp) inhibitors are described. An X-ray-based fragment screen of Novartis fragment collection resulted in the identification of a biphenyl acetic acid fragment 3, which bound in the palm subdomain of RdRp. Subsequent optimization of the fragment hit 3, relying on structure-based design, resulted in a >1000-fold improvement in potency in vitro and acquired antidengue activity against all four serotypes with low micromolar EC50 in cell-based assays. The lead candidate 27 interacts with a novel binding pocket in the palm subdomain of the RdRp and exerts a promising activity against all clinically relevant dengue serotypes.
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