K. D. Rice et al. / Bioorg. Med. Chem. Lett. 22 (2012) 2693–2697
2697
Table 3
Rat PK and mouse plasma exposure for compounds 5b, 7, 9, and 11a,b
ID
Species
Dose (mg/kg)
CL (mL/h/kg)
Vd (L/kg)
T1/2 (h)
F (%)
Cmax
(lM)
AUC/dose (lM h kg/mg)
Mouse plasma exposure at 100 mg/kg,
IV/PO
IV/PO
IV/PO
1 and 4 h (lM)
5b
7
9
11a
11b
11b
11b
Rat
Rat
Rat
Rat
Rat
Dog
Monkey
5
4769
3809
4382
2940
2722
1562
1230
14.7
9.7
2.5/1.7
2.1/1.4
2.4/2.9
3.1/2.9
3.5/7.9
7.5/10.4
6.1/6.4
13
11
10
28
35
58
77
1.15/0.07
0.39/0.02
0.37/0.01
1.44/0.14
0.33/0.04
0.21/0.10
0.58/0.40
0.35/0.05
0.43/0.05
0.45/0.05
0.56/0.15
0.64/0.17
0.95/0.54
1.22/0.94
1.2/1.3
1.2/1.2
0.3/0.1a
2.0/2.0
1.6/3.1
2.5
2.5
5
2.5
3
14.2
10.5
12.9
17.0
6.9
3
a
At 30 mg/kg.
9. O’Reilly, K.E.;Rojo, F.; She, Q.-B.;Solit, D.;Mills, G. B.;Smith, D.; Lane,H.; Hofmann,
F.; Hicklin, D. J.; Ludwig, D. L.; Baselga, J.; Rosen, N. Cancer Res. 2006, 66, 1500.
10. Bussenius, J.; Anand, N. K.; Blazey, C. M.; Bowles, O. J.; Canne Bannen, L.; Chan,
D. S. M.; Chen, B.; Co, E. W.; Costanzo, S.; DeFina, S. C.; Dubenko, L.; Engst, S.;
Franzini, M.; Huang, P.; Jammalamadaka, V.; Khoury, R. G.; Kim, M. H.; Klein, R.
R.; Laird, D.; Le, D. L.; Mac, M. B.; Matthews, D. J.; Markby, D.; Miller, N.; Nuss, J.
M.; Parks, J. J.; Tsang, T. H.; Tsuhako, A. L.; Wang, Y.; Xu, W.; Rice, K. D. Bioorg.
Med. Chem. Lett. 2012, 12, 2283.
11. p70S6K and Akt1 assay: Kinase activity was measured as the percent of ATP
consumed following the kinase reaction using luciferase–luciferin-coupled
chemiluminescence. Reactions were conducted in 384-well white, medium
binding microtiter plates (Greiner). Kinase reactions were initiated by
Unfortunately, most compounds like the ether 5b, the fluorinated
ethyloxymethyl analog 7, and the oxadiazole 9 showed low
absorption and oral bioavailability. Only the ketones 11a and 11b
had significantly improved values. The pharmacokinetic profile of
the most active compound, ketone 11b was then also obtained in
the dog and monkey, where it showed even higher oral bioavaila-
bilities of 58% and 77%, respectively.
On the basis of the high biochemical activity and cellular po-
tency combined with good oral bioavailability in different species,
we decided to advance compound 11b into a pharmacodynamic
study, in which the inhibition of S6-, GSK3b-, and PRAS40- (an-
other downstream target of Akt) phosphorylation was measured.
The compound was dosed at 100 mg/kg bid with a total of five
doses before measurement in the PC-3 prostate carcinoma model
and demonstrated 90% inhibition of S6-p, 46% inhibition of
GSK3b-p, and 76% inhibition of PRAS40-p. Compound 11b was sub-
sequently evaluated in a PC-3 xenograft efficacy experiment and
dosed orally at 50 mg/kg qd for 15 days. In this study 11b resulted
in 52% tumor growth inhibition (TGI), compared to 49% TGI for the
selective p70S6K inhibitor 1a at 100 mg/kg.10 The efficacy of com-
pound 11b was also determined in the A549 breast cancer model
and dosed orally at 50 mg/kg qd and 100 mg/kg qd for two days
every 4 days. The compound was highly active in this study with
71% tumor growth inhibition for the 50 mg/kg dose and 96% TGI
for the 100 mg/kg alternate dosing schedule as a single agent.
In summary, we have described the successful optimization of a
selective p70S6K inhibitor 1a into a dual Akt/p70S6K inhibitor 11b.
The additional Akt activity is reflected in better efficacy in xeno-
graft studies compared to 1a. Due to its excellent activity in vitro
and in vivo combined with good oral bioavailability in higher spe-
cies, compound 11b was nominated as clinical candidate and went
into development as an oral agent for use in patients with solid tu-
mors and hematological malignancies under the name XL418.
combining test compounds, 500 nM ATP, and kinase in 20 lL of reaction
buffer (20 mM Hepes pH 7.5, 10 mM MgCl2, 0.03% NP40, 0.03% BSA, 1 mM
DTT). The reaction mixture was incubated at ambient temperature for 3 h after
which 20
lL aliquot of luciferase–luciferin mix (50 mM HEPES, pH 7.8, 67 mM
oxalic acid (pH 7.8),
5
(or 50) mM DTT, 0.4% Triton X-100, 0.25 mg/mL
coenzyme A, 63 mM AMP, 28 mg/mL luciferin and 40,000 units/mL luciferase)
was added and the chemiluminescence signal measured using a Victor2 plate
reader (Perkin–Elmer).
12. pS6 assay in cells: A549 (ATCC, CCL-185) or PC-3 (ATCC, CRL-1435) cells were
seeded in 96-well plates (NUNC) in DMEM (Cellgro) containing heat inactivated
10% FBS (Hyclone), 1% penicillin–streptomycin (Cellgro), and 1% non-essential
aminoacids (Cellgro) at7.5 ꢁ 103cells/well. Cellswere incubatedat 37 °C, 5%CO2
for 48 h. Test compound in DMSO was diluted in DMEM. The DMSO
concentration in cell culture medium was maintained at 0.2% in all wells. Cells
were treated with diluted compound and each concentration assayed in
triplicate at concentrations of 1.2–300 nM. 0.004–1 nM rapamycin (Cell
Signaling Technology, 9904) and 0.12–30 nM staurosporine (Calbiochem,
569396) served as positive controls. Negative control wells were treated with
DMSO. Cells were incubated for 3 h at 37 °C, 5% CO2 for 3 h in the presence of
compound. Post compound treatment cells were fixed as follows: medium was
removed and 100
(Pierce, 28376) was added to each well at room temperature (RT) for 20 min.
Cells were quenched with 100 l 0.6% H2O2 (VWR International, 43038308) in
TBS (Pierce, 28376) + 0.1% Tween20 (Sigma, P-7949) (TBST) for 20 min at rt.
l TBS and blocked with 100 l 5% BSA (Jackson
ll/well of 4% formaldehyde (Sigma–Aldrich, 08920AD) in TBS
l
Plates were washed 3ꢁ with 200
l
l
ImmunoResearch Laboratory, 001-000-162 unless otherwise noted) in TBST for
1 h at rt. Anti-phospho-S6 ribosomal protein antibody (Cell Signaling
Technology, Ser 240/244 2212L) and anti-total-S6 ribosomal protein antibody
(Cell Signaling Technology, 2215L) were diluted 1:200 in 5% BSA (Jackson
ImmunoResearch Laboratory, 64004) in TBST. Fifty microliter primary antibody
solution was added to each well and incubated overnight at 4 °C. Plates were
washed 3ꢁ with 200
ll TBST. Goat anti-rabbit secondary antibody (Chemicon
International, 24070101) was diluted at 1:20000 in 5% non-fat dry milk in TBST.
Fifty microliter of antibody solution was added to each well and incubated for 1 h
Acknowledgment
at rt. Plates were washed 3ꢁ with 200
ll TBST and 2ꢁ 200 ll TBS.
Chemiluminescent substrate (Super Signal Elisa Femto Chemiluminescent
Substrate; Pierce, 37075) was prepared at rt. Hundred microliter of
chemiluminescent substrate per well was added and then the plate was
shaken for 1 min. Luminescence was read immediately on a Wallac plate reader.
13. GSK3b cell assay in PC-3 cells: PC-3 cells were seeded in 96-well plates in
DMEM containing heat-inactivated 10% FBS, 1% penicillin–streptomycin, and
1% non-essential amino acids at 7.5 ꢁ 103cells/well. Cells were incubated at
37 °C, 5% CO2 for 24 h and then starved in serum-free medium for 24 h. Test
compound in DMSO was diluted in DMEM. The DMSO concentration in cell
culture medium was maintained at 0.2% in all wells. Cells were treated with
diluted compound and each concentration assayed in triplicate at
The authors thank Paul Foster for his graphical support.
References and notes
1. Vivanco, I.; Sawyers, C. L. Nat. Rev. Cancer 2002, 2, 489.
2. Yap, T. A.; Garrett, M. D.; Walton, M. I.; Raynaud, F.; DeBono, J. S.; Workman, P.
Curr. Opin. Pharmacol. 2008, 8, 393.
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2005, 4, 988.
4. Engelman, J. A. Nat. Rev. Cancer 2009, 9, 550.
concentrations of 12–3000 nM. 1.2–300 nM staurosporine served as a
5. Liu, P.; Cheng, H.; Roberts, T. M.; Zhao, J. J. Nat. Rev. Drug Disc. 2009, 8, 627.
6. Courtney, K. D.; Corcoran, R. B.; Engelman, J. A. J. Clin. Oncol. 2010, 28, 1075.
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Mischel, P. S.; Mellinghoff, I. K.; Sawyers, C. L. PLoS Med. 2008, 5, 139.
positive control. Negative control wells were treated with DMSO. Cells were
incubated for 3 h at 37 °C, 5% CO2 in the presence of compound followed by
stimulation with 100 ng/ml IGF1 (Upstate Biotechnology, 01-189) for 30 min.
Post compound treatment cell plates were processed as described for the pS6
cell assay except that the primary antibodies were Anti-phospho-GSK3b(S9)
(Cell Signaling Technology, 9336) and anti-total-GSK3b (Cell Signaling
Technology, 9332) diluted 1:200 in 5% BSA in TBST.
14. Breitenlechner, C. B.; Wegge, T.; Berillon, L.; Graul, K.; Marzenell, K.; Friebe, W.-
G.; Thomas, U.; Schumacher, R.; Huber, R.; Engh, R. A.; Masjost, B. J. Med. Chem.
2004, 47, 1375.