10.1002/adsc.201700637
Advanced Synthesis & Catalysis
combined and the solvent was evaporated. Alternatively,
substrate and product can be extracted directly using MIP
as described below. The residue was redissolved in
acetonitrile (200 µL), filtered and analyzed by HPLC-MS.
[3] F. P. Guengerich, A. W. Munro, J. Biol. Chem. 2013,
288, 17065–17073.
[4] F. P. Guengerich, Chem. Res. Toxicol. 2001, 14, 611–
650.
MIP Extraction of Epoxides
[5] E. M. Isin, F. P. Guengerich, Biochim. Biophys. Acta
2007, 1770, 314–329.
The MIP was prepared as previously described[19] using as
the template a theobromine derivative with a 6-carbon
chain hydroxylated at C4, as a stable mimic of the epoxide.
The template was removed as usual.[19] To test the method,
a mixture containing a known amount of 20 (1 mg, 2.5 mL,
1.5 mM in H2O) was loaded onto the MIP (1.5 mL) by
centrifugation (3,000 × g for 5 min at 4°C), leaving a dry
solid phase. The MIP was then washed with H2O (3 × 2.5
mL) by centrifugation (3,000 × g at 4°C for 5 min each).
The aqueous eluate was discarded, leaving a dry solid
phase. Finally, the epoxide was eluted from the solid phase
with ethanol:acetic acid (9:1, 3 × 2.5 mL). The eluate was
pooled and diluted to 25 mL with H2O, before analysis by
LC-UV-MS (injecting 100 µL).
[6] R. Fasan, ACS Catal. 2012, 2, 647–666.
[7] H. M. Girvan, A. W. Munro, Curr. Opin. Chem. Biol.
2016, 31, 136–145.
[8] M. Carta, R. Malpass-Evans, M. Croad, Y. Rogan, J. C.
Jansen, P. Bernardo, F. Bazzarelli, N. B. McKeown,
Science. 2013, 339, 303–307.
[9] P. S. Coelho, Z. J. Wang, M. E. Ener, S. A. Baril, A.
Kannan, F. H. Arnold, E. M. Brustad, Nat. Chem. Biol.
2013, 9, 485–487.
Spectral Binding Studies
[10] J. A. McIntosh, P. S. Coelho, C. C. Farwell, Z. J.
Wang, J. C. Lewis, T. R. Brown, F. H. Arnold, Angew.
Chemie - Int. Ed. 2013, 52, 9309–9312.
All UV/Vis spectra of the enzyme-ligand complexes were
obtained on a Cary 5000 UV/Vis spectrophotometer. P450
3A4 (2 μM, 22 μL from a 17.8 μM stock), KPi buffer (178
μL, 0.1 M at pH = 7.4) were added to both the reference
and sample cuvettes, and a blank was taken. In separate
experiments, substrates 3, 5, 13, 14 and 15 were titrated
into the sample cuvette from stock solutions in acetonitrile
such that the final acetonitrile concentration never
exceeded 3% (v/v). This acetonitrile concentration had no
detectable effect on the P450 spectra. Equal volumes of
acetonitrile were added to the reference cuvette and the
difference spectra were acquired from 300−500 nm. The
difference in absorbance at the peak and the trough was
plotted against substrate concentration to obtain a binding
curve. Spectral dissociation constants (Ks) were extracted
from the binding curves by fitting to the following
equation:
[11] Z. J. Wang, N. E. Peck, H. Renata, F. H. Arnold,
Chem. Sci. 2014, 5, 598–601.
[12] T. K. Hyster, C. C. Farwell, A. R. Buller, J. A.
McIntosh, F. H. Arnold, J. Am. Chem. Soc. 2014, 136,
15505–15508.
[13] R. Singh, J. N. Kolev, P. A. Sutera, R. Fasan, ACS
Catal. 2015, 5, 1685–1691.
[14] J. N. Kolev, K. M. O’Dwyer, C. T. Jordan, R. Fasan,
ACS Chem. Biol. 2014, 9, 164–173.
[15] R. Singh, M. Bordeaux, R. Fasan, ACS Catal. 2014, 4,
546–552.
|∆A| = (|∆Amax|∙|S|) / (Ks + |S|)
[16] B. C. Jones, D. S. Middleton, K. Youdim, in Prog.
Med. Chem., Elsevier, 2009, pp. 239–263.
Here ΔA is the difference in absorbance between the peak
and the trough, ΔAmax is the maximum reachable value of
ΔA at saturating substrate concentrations, [S] is the
substrate concentration, and Ks is the apparent spectral
dissociation constant. Fitting was performed by using the
GraphPad Software.
[17] A. T. Larsen, E. M. May, K. Auclair, J. Am. Chem.
Soc. 2011, 133, 7853–7858.
[18] A. Menard, C. Fabra, Y. Huang, K. Auclair,
Chembiochem a Eur. J. Chem. Biol. 2012, 13, 2527–
2536.
Acknowledgements
[19] A. T. Larsen, T. Lai, V. Polic, K. Auclair, Green
Chem. 2012, 14, 2206–2211.
This work was funded by grants to K.A. from the National
Science and Engineering Research Council of Canada (NSERC)
and the Center in Green Chemistry and Catalysis (CGCC). K.J.C
thanks the CGCC for a scholarship. V.P. was supported by
scholarships from the Dr. Richard H. Tomlinson Foundation and
CGCC. We would also like to thank Dr. J. R. Halpert for
providing the cytochrome P450 3A4 plasmid, and Dr. C. B.
Kasper for the CPR plasmid.
[20] D. J. Ramon, M. Yus, Curr. Org. Chem. 2004, 8,
149–183.
[21] T. Katsuki, K. B. Sharpless, J. Am. Chem. Soc. 1980,
102, 5974–5976.
[22] W. Zhang, J. L. Loebach, S. R. Wilson, E. N.
Jacobsen, J. Am. Chem. Soc. 1990, 112, 2801–2803.
References
[23] A. Murphy, G. Dubois, T. D. P. Stack, J. Am. Chem.
Soc. 2003, 125, 5250–5251.
[1] R. Bernhardt, J. Biotechnol. 2006, 124, 128–145.
[2] F. P. Guengerich, in Cytochrome P450 Struct. Mech.
Biochem. (Ed.: P.R. Ortiz de Montellano), Kluwer
Academic/Plenum Publishers, New York, 2005, pp.
377–530.
[24] F.-D. Boyer, I. Hanna, L. Ricard, Org. Lett. 2004, 6,
1817–1820.
[25] J. He, J. Ling, P. Chiu, Chem. Rev. 2014, 114, 8037–
8128.
6
This article is protected by copyright. All rights reserved.