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5729
Olefinic substitutions off the 6-position pyridine offered
some interesting analogues. trans-Propene derivative
15m is only 2-fold less potent than lead compound 1
in both enzymatic and cellular assays. In comparison,
the cis-isomer 15n is 3- to 8-fold less potent in vitro
and in cells, respectively. Styrene substitution 15o
showed a 20-fold decrease in potency. Interestingly,
15o was shown to be more potent in HepG2 cells than
in the enzymatic assay. The possibility of cellular toxic-
ity could not be ruled out although the cells appeared
healthy during the cellular assay. Polar groups append-
ed to the trans-double bond, such as hydroxyethyl 15p
or carboxylic acid 15q, provided fairly potent analogues.
Saturation of the propenic acid (15r) reduced the inhib-
itory potency by about 5-fold. Among the several 6-car-
boxamide derivatives, only the isopropyl amide 18
possessed sub-micromolar IC50 versus JNK1&2.
cavity within the ATP-binding pocket.17 Kinases with
a threonine at this position are readily targeted by a
diverse classes of small molecule inhibitors that can
access this natural pocket, including the kinase inhibi-
tors currently in clinical use (Gleevec, Iressa, Tarceva).
Having a larger methionine as the gatekeeper residue
in JNK made it intrinsically more difficult to reach the
‘specificity pocket’.
The second reason may have something to do with the 4-
aminopyridine carboxamide template we were using to
access the ‘specificity pocket’. The particular vector pro-
vided by extension off the 5-position of pyridine 1 may
not be as favorable as X-ray structure and molecular
modeling had suggested. The 6-anilinoimdazole-based
JNK3 inhibitor 3b (Fig. 3) binds to JNK3 in an in-
duced-fit manner, with the gatekeeper residue Met146
(JNK3 numbering) moved out of way to accommodate
the aniline portion of the molecule in the ‘specificity
pocket’. Such precedent suggests that with appropriate
molecular template, it is possible to target the ‘specifici-
ty’ pocket with methionine as the gatekeeper residue.
More productive SAR came from the 6-amino or 6-
ether analogues (Table 3). Isopropoxy compound 16a
is equipotent to the lead compound 2 in vitro, and 2-fold
more active in c-Jun phosphorylation assay than 2.
Some other smaller alkoxides seemed to work well too,
such as cyclopropylmethoxy 16b and isopropylmethoxy
16c. In comparison, larger alkoxide 16d and phenoxide
16e led to slightly weaker analogues.
In summary, we have investigated structural modifica-
tions to reach both the kinase specificity and ribose pock-
ets of JNK1 using our proprietary 4-aminopyridine
carboxamide template. Although several modifications
were identified as equivalent in terms of in vitro and cel-
lular potency to lead compound 2, we have yet to find
the extensions that optimize interaction with either the
kinase specificity pocket or the ribose pocket. The in-
sights gained from this work will facilitate future optimi-
zation efforts in other domains of the lead compounds.
Due to the relative ease of synthesis of 6-amino ana-
logues, more functional groups were explored with this
set of modification. Similar to the ether analogues, small
hydrophobic amines were favored to give inhibitors
(17a–d) with double-digit nanomolar IC50 values. The
benzylamine and phenethyl amine derivatives (17e–f)
showed reduced potency against JNK1&2. Neutral po-
lar extensions (17g–l) off the ethylamine were generally
well tolerated, such as urea, amides, alcohol, and ether.
Basic groups, such as primary amine (17n) or tertiary
amine (17o) off the ethylamine, led to analogues with
substantially reduced inhibitory potency. Alpha-substit-
uents off the 6-amino group were introduced to provide
a means for accessing the sugar pocket in the presence of
hydrophilic terminal groups. (S)-alaninol derivative 17p
is among the most potent analogues within the series,
while the (R)-enantiomer (17q) is 6-fold less potent. Fur-
ther extension with (S)-leucinol (17r) led to 50-fold drop
of potency, presumably due to unfavorable steric inter-
action. A symmetrical diol branch led to a fairly potent
analogue 17m. For 6-aminopyridine analogues, there
seemed to be a larger discrepancy between in vitro
IC50s and their cellular activity except the more lipophil-
ic 17a, 17c–d. Increased hydrophilicity could potentially
hinder the effective diffusion of the inhibitors into
HepG2 cells.
Acknowledgment
The authors thank Dr. Charles Hutchins for generating
the graphic shown in Figure 2.
References and notes
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There are two possible reasons behind the challenges
associated with targeting the gatekeeper residue of
JNK kinases. As mentioned earlier, the gatekeeper resi-
due in the ATP-binding pocket has been shown to con-
trol kinase selectivity to a wide range of structurally
unrelated compounds. This residue is conserved as a
threonine or larger amino acids in the human kinome,
and structural analysis has shown that the size of this
gatekeeper residue restricts access to a pre-existing