New trifluoromethyl triazolopyrimidines as Anti-Plasmodium falciparum agents

Article abstract of DOI:10.3390/molecules17078285

According to the World Health Organization, half of the World's population, approximately 3.3 billion people, is at risk for developing malaria. Nearly 700,000 deaths each year are associated with the disease. Control of the disease in humans still relies on chemotherapy. Drug resistance is a limiting factor, and the search for new drugs is important. We have designed and synthesized new 2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine derivatives based on bioisosteric replacement of functional groups on the anti-malarial compounds mefloquine and amodiaquine. This approach enabled us to investigate the impact of: (i) ring bioisosteric replacement; (ii) a CF3 group substituted at the 2-position of the [1,2,4]triazolo[1,5-a]pyrimidine scaffold and (iii) a range of amines as substituents at the 7-position of the of heterocyclic ring; on in vitro activity against Plasmodium falciparum. According to docking simulations, the synthesized compounds are able to interact with P. falciparum dihydroorotate dehydrogenase (PfDHODH) through strong hydrogen bonds. The presence of a trifluoromethyl group at the 2-position of the [1,2,4]triazolo [1,5-a]pyrimidine ring led to increased drug activity. Thirteen compounds were found to be active, with IC50 values ranging from 0.023 to 20 μM in the anti-HRP2 and hypoxanthine assays. The selectivity index (SI) of the most active derivatives 5, 8, 11 and 16 was found to vary from 1,003 to 18,478.

Full text of DOI:10.3390/molecules17078285

Molecules 2012, 17, 8285-8302; doi:10.3390/molecules17078285
OPEN ACCESS
molecules
ISSN 1420-3049
www.mdpi.com/journal/molecules
Article
New Trifluoromethyl Triazolopyrimidines as
Anti-Plasmodium falciparum Agents
Núbia Boechat 1,*, Luiz C. S. Pinheiro 1, Thiago S. Silva 1,2, Anna C. C. Aguiar 3,4
,
Alcione S. Carvalho 1, Monica M. Bastos 1, Carolina C. P. Costa 1, Sergio Pinheiro 5,
Angelo C. Pinto 2, Jorge S. Mendonça 1, Karen D. B. Dutra 1,5, Alessandra L. Valverde 5,
Osvaldo A. Santos-Filho 1, Isabela P. Ceravolo 3 and Antoniana U. Krettli 3,4
1
Departamento de Síntese Orgânica, Instituto de Tecnologia em Fármacos-Farmanguinhos,
Fundação Oswaldo Cruz, Manguinhos, Rio de Janeiro, RJ 21041-250, Brazil
2
Departamento de Química Orgânica, Instituto de Química, Universidade Federal do Rio de Janeiro,
Cidade Universitária, Rio de Janeiro, RJ 21941-590, Brazil
3
Laboratório de Malária, Instituto de Pesquisas René Rachou, Fundação Oswaldo Cruz,
Belo Horizonte, MG 30190-002, Brazil
4
Programa de Pós Graduação em Medicina Molecular, Faculdade de Medicina,
Universidade Federal de Minas Gerais, Belo Horizonte, MG 30000-000, Brazil
5
Departamento de Química Orgânica, Instituto de Química, Universidade Federal Fluminense,
Campus do Valonguinho, Niterói, RJ 24020-141, Brazil
* Author to whom correspondence should be addressed; E-Mail: boechat@far.fiocruz.br;
Tel.: +55-21-3977-2456; Fax: +55-21-2560-2518.
Received: 31 May 2012; in revised form: 27 June 2012 / Accepted: 29 June 2012 /
Published: 10 July 2012
Abstract: According to the World Health Organization, half of the World’s population,
approximately 3.3 billion people, is at risk for developing malaria. Nearly 700,000 deaths
each year are associated with the disease. Control of the disease in humans still relies on
chemotherapy. Drug resistance is a limiting factor, and the search for new drugs is important.
We have designed and synthesized new 2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine
derivatives based on bioisosteric replacement of functional groups on the anti-malarial
compounds mefloquine and amodiaquine. This approach enabled us to investigate the impact
of: (i) ring bioisosteric replacement; (ii) a CF3 group substituted at the 2-position of the
[1,2,4]triazolo[1,5-a]pyrimidine scaffold and (iii) a range of amines as substituents at the
7-position of the of heterocyclic ring; on in vitro activity against Plasmodium falciparum.
According to docking simulations, the synthesized compounds are able to interact with

Molecules 2012, 17
P. falciparum dihydroorotate dehydrogenase (PfDHODH) through strong hydrogen
8286
bonds. The presence of a trifluoromethyl group at the 2-position of the [1,2,4]triazolo
[1,5-a]pyrimidine ring led to increased drug activity. Thirteen compounds were found to be
active, with IC50 values ranging from 0.023 to 20 µM in the anti-HRP2 and hypoxanthine
assays. The selectivity index (SI) of the most active derivatives 5, 8, 11 and 16 was found
to vary from 1,003 to 18,478.
Keywords: triazolopyrimidine; trifluoromethyl; malaria; P. falciparum; PfDHODH
1. Introduction
According to the World Health Organization (WHO), half of the World’s population,
approximately 3.3 billion people, is at risk of contracting malaria. Nearly 700,000 deaths are
associated with this disease annually. One in five childhood deaths in Africa are believed to be due to
malaria [1,2].
In Brazil, a slight reduction in malaria cases was reported in 2009; however, a yearly total of over
306,000 cases was recently reported, most of which occurred in the Amazonia region [3]. Among the
five known species of malaria that affect humans, three are found in Brazil: P. falciparum, P. malariae
and P. vivax, with the latter causing 80% of the malaria cases diagnosed [3].
No effective vaccine is available yet for human use, although several promising antigens are
undergoing clinical trials among endemic populations [4]. Control of malaria in Latin America relies
on a specific therapeutic drug, chloroquine, used in association with other blood schizonticidal
antimalarial drugs. Primaquine is also used in the treatment of P. vivax to prevent late malaria relapses
caused by remaining liver forms [2]. In light of the rapid growth and spread of chloroquine-resistant
P. falciparum and P. vivax strains, the development of new and more effective blood schizonticidal
drugs is required. Several models are available to evaluate such new therapeutic agents [5].
The medicinal chemistry of fluorine-containing molecules has contributed greatly to the
development of new drugs used in a wide range of diseases. A fluorine atom is often introduced to
modify both the chemical reactivity and the physical and biological properties of organic compounds.
One of the most widespread fluorine-containing functional groups in bioactive molecules is the
trifluoromethyl moiety. It is a highly electronegative substituent that can exert significant electronic
influence on neighboring groups. The trifluoromethyl substituent is also one of the most lipophilic
groups known, making it useful for improving the targeting of molecules to enzyme active sites [6–12].
Many heterocyclic compounds have been developed in an attempt to find new drugs to treat
malaria [13–22]. In 2004, our research group described the synthesis of 5-methyl-7-N'-(N,N-diethylpentane-1,
4-diamine)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine derivatives [23,24]. These compounds
contained a trifluoromethyl group on the [1,2,4]triazolo[1,5-a]pyrimidine as a ring bioisostere of
mefloquine and N1,N1-diethylpentane-1,4-diamine to mimic the chloroquine pharmacophore (Figure 1).
However, these compounds showed poor antimalarial activity. Phillips and co-workers recently
confirmed our proposal, demonstrating that [1,2,4]triazolo[1,5-a]pyrimidines inhibit P. falciparum
dihydroorotate dehydrogenase (PfDHODH) and kill the parasite [25–29].

Molecules 2012, 17
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Figure 1. Strategy used in 2004 to obtain 5-methyl-7-N'-(N,N-diethylpentane-1,4-diamine)-2-
(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (29) as an antimalarial bioisostere of quinoline.
Continuing our research by using standard medicinal chemistry and modeling principles, such as
isosteric replacement, we have designed new antimalarial agents 4–29 that are derivatives of the
[1,2,4]triazolo[1,5-a]pyrimidine compounds (Figure 2). These derivatives were based on ring bioisosterism
with mefloquine and amodiaquine. Different arylamines 4–17, 22–27 and aliphatic amines 18–21, 28,
29 were incorporated into the structure to investigate the importance of the substituent at the
7-position. Investigation of the impact of CF3 in the 2-position of the [1,2,4]triazolo[1,5-a]pyrimidine
scaffold was prioritized. Twenty-six derivatives 4–29 from this series were designed, synthesized and
evaluated in vitro against a Plasmodium falciparum chloroquine-resistant W2 clone strain.
Figure 2. Rational approach to the design of [1,2,4]triazolo[1,5-a]pyrimidine derivatives 4–29.
2. Results and Discussion
2.1. Synthesis of Compounds
The synthetic route to [1,2,4]triazolo[1,5-a]pyrimidine derivatives 4–29 is shown in Figure 3.
Condensation of 3-amino-1,2,4-triazoles 1a–c with ethyl acetoacetate or ethyl 4,4,4-trifluoroacetoacetate

Molecules 2012, 17
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in refluxing toluene, in the presence of catalytic p-toluenesulfonic acid, gave [1,2,4]triazolo
[1,5-a]pyrimidin-7(4H)-ones 2a–d in 50–90% yields after 24 h, as previously described in the
literature [23,24,30,31]. Spectroscopic data of compounds 2a–d were in agreement with the literature,
and X-ray crystallography showed 2c as their keto-tautomers [24]. Compounds 2a–d were
easily chlorinated with phosphorus oxychloride under reflux for 6 h, affording the respective
7-chloro[1,2,4]triazolo[1,5-a]pyrimidines 3a–d in 58–90% yields. Compounds 3a and 3b showed
identical spectroscopic data to those reported in the literature [23,25–31]. Spectroscopic data of
compounds 3c and 3d were in agreement with the proposed structures. Reaction of compounds 3a–d
with several amines produced the target compounds 4–29 in 30–90% yields.
Figure 3. Synthesis of [1,2,4]triazolo[1,5-a]pyrimidines 4–29.
O
Cl
N
NH
N
N
N
N
(ii)
(i)
N
N
R1
1
2
R1
R1
2a 3a
: R = H, R = CH3;
;
NH2
N
R2
N
H
N
R2
2b; 3b: R1= CH3, R2= CH3;
2c; 3c: R1= CF3, R2= CH3;
2d; 3d: R1= CF3, R2= CF3
1a: R1= H;
1b: R1= CH3;
2a-d
3a-d
1
1c
: R = CF3
6: R= H;
7: R= 3-Cl;
R
8
: R= 3,4-diCl;
NH
NH
R
9: R= 2,4-diCl;
10: R= 2,6-diF;
11: R= 4-OCH3;
12: R= 3,5-diOCH3
13
NH
N
N
F3C
N
N
N
R1
N
N
N
N
R2
N
N
N
F3C
4: 1-naphthyl;
5: 2-naphthyl
14: R= 3,5-diOCH3, R1=R2=CH3;
15: R= 3,5-diCl, R1=R2=CH3;
16: R= 4-CF3, R1=R2=CH3;
17: R= 3,5-diCl, R1=R2=CF3
: R= 3,5-diCl;
(iii)
(iii)
(iii)
H
N
N
Cl
N
N
(v)
N
N
R1
NH
N
(iii)
R1
N
N
N
N
N
R2
28: R1= H;
29: R1= CF3
F3C
3a-d
N
N
(iv)
(iii)
18
(iv)
Y
(iv)
R
N
X
N
N
N
N
N
N
F3C
N
F3C
N
NH
NH
N
N
N
19: R= N- morpholinyl;
: R= N- 4-methylpiperazinyl;
21: R= N- pyrrolidinyl
F3C
F3C
N
N
N
NH
20
N
24: X= N, Y= CH;
25: X= CH, Y= N;
26: X= N, Y= N;
F3C
N
N
N
22
27
: X= CH, Y= CH
N
23
Reagents and conditions: (i) ethyl acetoacetate or ethyl 4,4,4-trifluoroacetoacetate, TsOH (cat.),
toluene, reflux, 20 h; (ii) POCl3, reflux, 4 h; (iii) appropriate amine, EtOH, RT, 16–18 h;
(iv) appropriate amine/azol, DMF, 120 °C, 12 h; (v) appropriate amine, EtOH, RT, 43 h.
2.2. Molecular Modeling
It is known that [1,2,4]triazolo[1,5-a]pyrimidine derivatives interact with the enzyme
dihydroorotate dehydrogenase (DHODH) [25,32]. Thus, docking calculations were performed for the
newly synthesized compounds to verify their binding modes with this enzyme from P. falciparum
(PfDHODH) available in the Protein Data Bank as PDB ID code 3I65. Each compound was modeled,

Molecules 2012, 17
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and 1,000 steps of energy minimization were performed by the steepest descent method using
Gasteiger-Hückel charges and a dielectric constant of 80 in the Tripos force field [33]. The structures
were further optimized using the conjugated gradient method.
Ligand-enzyme docking simulations were performed with the molecular docking algorithm
MolDock [34] using the Molegro Virtual Docker 4.3.0. MolDock uses a heuristic search algorithm
(i.e., termed guided differential evolution), which combines differential evolution and a cavity-prediction
algorithm. The docking scoring function is an extension of the piecewise linear potential (PLP) [34].
After the ligands and protein coordinates were imported, all structural parameters, including bond type,
hybridization, explicit hydrogen, charges, and flexible torsions, were assigned using the automatic
preparation function in the Molegro Virtual Docker software. For each compound, 100 docking runs
were performed with the initial population of 150 individuals. After each compound was docked,
it was energy-minimized into the active site of the enzyme.
All synthesized compounds were docked into PfDHODH. The known PfDHODH inhibitor DSM1
that was co-crystallized with the enzyme was used as the reference molecule during the docking
simulations [32].
Enzyme residues H185 and R265 and the water molecule W15 found in the crystal structure of
PfDHODH act as “molecular anchors” for binding molecules 4–29 at the active site. Such “anchors”
are actually hydrogen bonds formed between 4–29 and the enzyme residues or the water molecule.
Each [1,2,4]triazolo[1,5-a]pyrimidine 4–29 interacts with R265 by forming a hydrogen bond through
N-4. An additional hydrogen bond can be present between N-1 of the pyrimidine ring and H185. The
frequency with which hydrogen bonds are formed between the W15 molecule and CF3 groups at the
2-position of [1,2,4]triazolo[1,5-a]pyrimidine rings of the majority of compounds was remarkable.
Twenty-two of the 26 synthesized compounds (compounds 4–13, 17–27, 29) showed the CF3–W15
interaction. Consequently, the CF3 group must be carefully considered for the development of potential
new lead inhibitors of PfDHODH. Figure 4 shows the R265–N-4 and the CF3–W15 interactions.
Figure 4. Compound 5 docked into the active site of PfDHODH.

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2.3. Continuous Cultures and in Vitro Assays with P. falciparum-Infected Erythrocytes
The P. falciparum W2 clone, which is chloroquine-resistant and mefloquine-sensitive [35], was
maintained in continuous culture. Briefly, the parasites were kept as described [36] at 37 °C in human
erythrocytes (A+) in complete medium (RPMI 1640 supplemented with 10% human sera blood group
A+, 2% glutamine, and 7.5% NaHCO3) either in Petri dishes in a candle jar or in 25-cm culture flasks
in an environment containing a gas mixture atmosphere (3% O2, 5% CO2 and 91% N2). Before testing,
the ring-stage parasites were synchronized by sorbitol [37]; the suspension was adjusted for
parasitemia and hematocrit as described below for each test used. The infected red blood cells were
distributed in a 96-well microtiter plate (Corning, Santa Clara, CA, USA), 180 μL/well, to which
20 μL of different concentrations of test drugs and controls had previously been added. The maximum
concentration 50 µg/mL (~157 μM) was tested two or three times; compounds are considered inactive
at equal or higher doses.
The effects of compounds against the W2 P. falciparum blood cultures were evaluated through
incorporation of 3H hypoxanthine (Perkin Elmer, Waltham, MA, USA) by the parasites [38]. Alternatively,
compound effects were also examined using monoclonal antibodies to a commercially available
parasite histidine and alanine-rich protein (HRP2) (MPFM ICLLAB-55A®, MPFG55P ICLLAB®,
Immunology Consultants Laboratory Inc. (ICL), Portland, OR, USA), as described previously [39]. The
[3H]-hypoxanthine assay was performed with 1% of parasitemia and 1% of hematocrit, and the level of
isotope incorporation was read in a beta-counter (Perkin Elmer). The anti-HRP2 test was performed
with 0.05% parasitemia and 1.5% hematocrit, and the quantification of protein was determined using a
specific read at 450 nm in a spectrophotometer (SpectraMax340PC384, Molecular Devices, Sunnyvale, CA,
USA). Drug activities were expressed by the half-maximal inhibitory dose (IC50) compared to the
drug-free controls and estimated using the curve-fitting software Origin 8.0 (OriginLab Corporation,
Northampton, MA, USA) [40].
2.4. Cell Cultures and Cytotoxicity Tests
The human hepatoma cell line (HepG2) was cultured in 75-cm2 sterile flasks with RPMI 1640
medium supplemented with 10% heat-inactivated fetal and 40 mg/L gentamicin in a 5% CO2 atmosphere at
37 °C. For in vitro cytotoxicity experiments, the cell monolayer was trypsinized, washed with culture
medium, distributed in a flat-bottomed 96-well plate (5 × 103 cells/well), and finally incubated for
18 h at 37 °C for cell adherence.
For cytotoxicity testing, we used the (3-(4,5-dimethylthiazol-2-yl)-2,5-diphenyltetrazolium bromide
(MTT) assay, performed as described in the literature [41]. The HepG2 cell line was incubated with
20 µL of the compounds in different concentrations (200–25 µg/mL) for 24 h in an atmosphere of 5%
CO2 at 37 °C.
For the MTT assay, which evaluates mitochondrial viability, 20 µL of MTT solution (5 mg/mL)
was added, and the plates were incubated for an additional 3 h. After incubation, the supernatant was
carefully removed from the wells, followed by addition of 100 µL DMSO with thorough mixing.
Optical densities at 570 and 630 nm (background) were determined by an ELISA reader.

Molecules 2012, 17
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Cell viability was expressed as the percentage of control absorbance obtained in untreated cells after
subtracting the absorbance from appropriate background. Lastly, the minimum lethal dose for 50% of
the cells (MLD50) was determined as previously described in the literature [42]. The ratio between
MLD50 and drug activity (IC50) in vitro was used to determine the selectivity index (SI).
The synthesized compounds with different substituents in the 2-, 5-, and 7-positions of the [1,2,4]
triazolo[1,5-a]pyrimidine scaffold were tested against the W2-chloroquine-resistant P. falciparum clone.
The anti-P. falciparum activity and cytotoxicity results of the 26 new [1,2,4]triazolo[1,5-a]pyrimidine
derivatives are summarized in Table 1. Among them, 13 showed low IC50 values (ranging from 0.023
to 20 µM) in the anti-HPR2 and [3H]-hypoxanthine incorporation tests. The other compounds showed high
IC50 values (>20 µM) or were inactive. Values of SI greater than 10 are considered
non-toxic, which was the case for all new compound tested herein. Derivatives 5, 8, 11 and 16 were
the most active, least toxic, and had the highest SI values (from 1,003 to 18,478).
Table 1. Evaluation of anti-plasmodial activity against a chloroquine-resistant W2 clone
of P. falciparum, cytotoxicity against a human hepatoma cell line (HepG2) and drug
selectivity index (SI) of compounds 4–29 and chloroquine.
IC50 (µM) * Plasmodium Falciparum
MDL50 HepG2
(µM)
326
Compounds
SI MDL50/IC50
Anti-HRP2
2.2
Hypoxanthine
Nd
4
5
6
7
8
9
10
11
12
13
14
15
16
17
18
19
20
21
22
23
24
25
26
27
148
18,478
>227
203
1,003
0.023 ± 0.002
3 ± 2
1.83 ± 1.10
0.55 ± 0.66
2.7 ± 2.21
>69.9
Nd
10.2 ± 5
1.22
0.11 ± 0.05
3.32 ± 1.10
>148.9
425
>682
373
>552
320
337
>619
498
320
515
415
446
269
515
>697
>666
>738
394
<71
>746
<93
118
Inactive
>1,547
>199
218
134
Inactive
1486
Inactive
64
Inactive
Inactive
Inactive
Inactive
Inactive
>355
Inactive
Inactive
Inactive
Inactive
Inactive
4,200
0.4 ± 0.09
2.5 ± 0.05
1.47 ± 0.11
3.84 ± 0.40
>162.3
1.5 ± 1.2
0.36 ± 0.1
0.83 ± 0.58
15.05 ± 10.03
149.3
0.3
12.31
0.4 ± 0.06
23.42
8.69 ± 0.46
>174.0
10.03
>174.0
39 ± 17
>184.5
57 ± 13
>184.5
>156.4
>170.0
36.93 ± 11.36
2.1
31.25 ± 17.04
Nd
21 ± 2
29.73
97.37 ± 22.47
>172.4
15 ± 0.7
33.45 ± 14.86
78.65 ± 7.49
>172.4
<93
>749
>689
>558
490
28
29
73 ± 17
39.1
Chloroquine
0.22
0.23
* IC50 < 10 µM active; >10 and <20 µM partially active; >20 µM inactive; Nd: not determined.

Molecules 2012, 17
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Taken together, the in vitro data of anti-P. falciparum and its toxicological activities show that these
four compounds are promising candidates for the development of a novel anti-malarial therapy.
Decreased biological activity resulted from substitution with cyclic secondary amines 19–21 and
alkylamines 28, 29. Moreover, except in the case of pyrazolyl derivative 24, compounds containing
azoles or heteroaromatics as substituents were inactive (compounds 22, 23, 25–27).
3. Experimental
1H-, 13C- and 19F-Nuclear Magnetic Resonance (NMR) spectra were obtained at 400.00 MHz,
100.00 MHz and 376.00 MHz, respectively, on a Bruker Avance instrument equipped with a 5-mm
probe, using tetramethylsilane as the internal standard. Chemical shifts (δ) reported in ppm and
coupling constants (J) in Hertz. Fourier transform infrared (FT-IR) absorption spectra were recorded
on a Shimadzu mode IR Prestige-21 spectrophotometer by reflectance in KBr. GC/MS experiments
were conducted using a model 6,890 N gas chromatograph (Agilent, Palo Alto, CA, USA) equipped
with a 7,683 B auto sampler coupled with a model MS 5,973 N single quadrupole mass spectrometer
(Agilent). The GC was equipped with a HP-5MS capillary column 30 m in length, 0.25 mm in
diameter, with a 0.25-μm film thickness. The temperature program began at 50 °C, then increased to
300 °C at a rate of 10 °C/min and held for 10 minutes. The helium flow rate was 0.5 mL/min. Melting
points (m.p.) were determined with a Büchi model B-545 apparatus. TLC was carried out using silica
gel F-254 glass plates (20 × 20 cm). All other reagents and solvents used were analytical grade.
3.1. General Procedure for Preparing [1,2,4]Triazolo[1,5-a]pyrimidin-7(4H)-ones (2a–d)
The [1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-ones 2a,b were prepared according to methodology
described in the literature [23,24,30,31]. A mixture of a 3-amino-1,2,4-triazole derivative (1c)
(20 mmol) and ethyl acetoacetate or ethyl 4,4,4-trifluoroacetoacetate (15 mL) was stirred at room
temperature for 30 minutes. To the mixture was added toluene (30 mL) and catalytic p-toluenesulfonic
acid. The reaction was heated under reflux for 24 h. The resulting solid was then cooled to RT, filtered,
washed with toluene, and dried. Compounds 2c,d were used without purification.
5-Methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one (2c) Yield: 90%; m.p. 266–267 °C;
IR (KBr, cm−1): 3,445 (NH); 1702 (C=O); 1,659 (C=N); 761 (CF3). 1H-NMR (CD3OD, ): 2.34 (s, 3H,
CH3); 5.98 (s, 1H, H-6); 13.59 (s, 1H, NH). 13C-NMR (CD3OD, ): 18.75; 99.26; 119.20 (q, 1J = 268.8
19
Hz, C-9); 151.56; 151.99 (q, J = 39 Hz, C-2); 152.74; 155.27. F-NMR (CD3OD, ): −64.97 (s, 3F).
GC-MS (70 eV) m/z (%): 218; 199; 190; 69 (100); 68; 53.
2,5-bis(Trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one (2d) Yield: 50%; m.p. 176–178 °C; IR
1
(KBr, cm−1): 3,489 (NH); 1,708 (C=O); 1,608; 761 (CF3). H-NMR (CD3OD, ): 6.61 (s, 1H, H-6).
1
1
13C-NMR (CD3OD, ): 101.33; 120.50 (q, J = 268.0 Hz); 121.27 (q, J = 272.0 Hz); 142.92 (q,
J = 37.5 Hz); 153.53. 19F-NMR (CD3OD, ): −67.73 (s, 3F); −67.73 (s, 3F). GC-MS (70 eV) m/z (%):
272; 152 (100); 69; 53; 43.

Molecules 2012, 17
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3.2. General Procedure for Preparing 7-Chloro[1,2,4]triazolo[1,5-a]pyrimidines 3a–d
The 7-chloro[1,2,4]triazolo[1,5-a]pyrimidine 3a,b were prepared according to methodology
described in the literature [23,30,31]. To a [1,2,4]triazolo[1,5-a]pyrimidin-7(4H)-one derivative 2c,d
(4.5 mmol) was added phosphorus oxychloride (10 mL). The mixture was stirred under reflux for 4 h.
Excess solvent was removed under reduced pressure and the resulting material was carefully added to
50 mL of crushed ice, which was then basified to pH 12 with NaOH (6 M aq.) and stirred for 40. The
mixture was diluted with water (30 mL) and extracted with chloroform (3 × 30 mL). The combined
organic solution was washed with water (3 × 50 mL), dried (magnesium sulfate), filtered, and
concentrated under vacuum.
7-Chloro-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (3c). Yield: 90%; m.p. 98–100 °C.
1
IR (KBr, cm−1): 3,062 (CH); 1,614 (C=N); 1,523; 1,487; 1,062; 1,215; 1,190; 752 (CF3). H-NMR
13
(CD3OD, ): 2.74 (s, 3H, CH3); 7.65 (s, 1H, H-6). C-NMR (CD3OD, ): 25.31; 115.18; 120.74 (q,
19
J = 268.6 Hz, C-9); 157.52 (q, J = 41.6 Hz, C-5); 141.32; 170.14. F-NMR (CD3OD, ): −67.27 (s,
3F). GC-MS (70 eV) m/z (%): 238; 236; 216; 201; 76; 69 (100); 51.
7-Chloro-2,5-bis(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (3d). Yield: 80%; m.p. 107–108 °C.
1
IR (KBr, cm−1): 3,130 (CH); 1,639 (C=N); 823; 625; 684 (CF3). H-NMR (CD3OD, ): 7.68 (s, 1H,
13
H-6). C-NMR (CD3OD, ): 112.39; 117.90 (q, J = 274.0 Hz); 118.60 (q, J = 270.0 Hz); 137.30 (q,
19
J = 40.4 Hz); 155.29; 158.37; 158.90 (q, J = 40.7 Hz). F-NMR (CD3OD, ): −68.22 (s, 3F); −65.83
(s, 3F). GC-MS (70 eV) m/z (%): 292; 290; 271; 69 (100).
3.3. General Procedure for Preparing 5-Methyl-7-aryl/cycloalkylamine[1,2,4]triazolo[1,5-a]pyrimidines
4–21
A mixture of a 7-chloro[1,2,4]triazolo[1,5-a]pyrimidine derivative 3b–d and the appropriate amine
(1 equivalent) in ethanol (10 mL) was stirred at room temperature for 16–18 h. The reaction mixture
was concentrated and poured into 50 mL of ice-cold water. The precipitate was collected by filtration
and washed with water (10 mL) to give 4–21 in yields of 50–90%.
5-Methyl-7-(naphthalen-1-ylamine)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (4). Yield: 85%;
m.p. 186–188 °C. IR (KBr, cm−1): 3,516 (N-H); 3,304; 1,627 (C=N); 1,575; 1,514; 1,448; 1,396;
1,369; 1,301; 1,282; 1,211, 1,195; 1,139; 806; 781 (CF3). 1H-NMR (CD3OD, ): 2.36 (s, 3H, CH3); 5.90
(s, 1H, H-6); 7.65–7.55 (m, 4H, H-5'-H-8'); 8.01–7.95 (m, 3H, H-2'-H-4'). 13C-NMR (CD3OD, ): 25.03;
92.49; 121.13 (q, J = 268.6 Hz, C-9); 123.54; 126.64; 127.09; 128.14; 128.51; 129.83; 130.25; 131.43;
19
133.17; 136.40; 150.15; 156.98 (d; J = 39.3 Hz; C-2);157.42; 168.41. F-NMR (CD3OD, ): −67.21
(s, 3F). GC/MS m/z (%): 343 (100); 324; 274; 190; 177; 127.
5-Methyl-7-(naphthalen-2-ylamine)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (5). Yield: 90%;
m.p. 163–164 °C. IR (KBr, cm−1): 3,062 (NH); 1,662 (C=N); 1,589; 1,506; 1,467; 1,369; 1,309; 1,288;
1,192; 1,184; 1,153; 848; 829; 779 (CF3). 1H-NMR (CD3OD, ): 2.60 (s, 3H, CH3); 6.67 (s, 1H, H-6);
7.63–7.58 (m, 3H, H-1'-H-4'); 7.97–8.11 (m, 4H, H-5'-H-8'). 13C-NMR (CD3OD, ): 25.19; 92.31;
121.07 (q, J = 214.8 Hz, C-9); 123.94; 124.41; 127.63; 128.14; 128.85; 128.95; 131.02; 133.62;

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19
134.91; 135.31; 148.63; 156.71 (q, J = 31.3 Hz, C-2); 157.32; 168.57. F-NMR (CD3OD, ): −67.47
(s, 3F). GC/MS m/z (%): 343 (100); 328; 247; 190; 177; 127.
5-Methyl-7-phenylamine-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (6). Yield: 85%; m.p.
151–152 °C. IR (KBr, cm−1): 3,653 (N-H); 3,062 (CH-aromatic); 2,999; 1,631 (C=N); 1,589; 1,512;
1
1,429; 1,369; 1,305; 1,286; 1,197, 1,170; 1,139; 777; 721 (CF3). H-NMR (CD3OD, ): 2.48 (s, 3H,
CH3); 6.46 (s, 1H, H-6); 7.50–7.36 (m, 5H, H-2'-H-6'). 13C-NMR (CD3OD, ): 25.18; 92.13; 121.05 (q,
J = 268.5 Hz, C-9); 126.28; 128.49; 131.08; 137.56; 148.83; 156.79 (q, J = 39 Hz, C-2); 157.39;
168.55. 19F-NMR (CD3OD, ): −67.22 (s, 3F). GC/MS m/z (%): 293 (100); 294; 278; 224; 190; 177; 77.
7-(3-Chlorophenylamine)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (7). Yield: 50%;
m.p. 136–138 °C. IR (KBr, cm−1): 3,603 (NH); 3,062 (CH-aromatic); 2,893; 1,627 (C=N); 1,589;
1
1,504; 1,431; 1,323; 1,192; 1,141; 1,072; 848; 779 (CF3). H-NMR (CD3OD; ): 2.52 (s, 3H, CH3);
6.55 (s, 1H, H-6); 7.38 (d, J = 7.5 Hz, H-6'); 7.42 (d, J = 8 Hz, 1H, H-4'); 7.50 (t, J = 8.0 Hz, 1H, H-');
13
7.51 (d, J = 2.0 Hz, 1H, H-2'). C-NMR (CD3OD, ): 25.23; 92.46; 121.02 (q, J = 214.9 Hz, C-9);
124.42; 126.17; 128.34; 132.31; 136.49; 139.15; 148.43; 156.77 (q, J = 31.3 Hz, C-2); 157.34; 168.85.
19F-NMR (CD3OD, ): −67.20 (s, 3F). GC/MS m/z (%): 327 (100); 328; 329; 312; 258; 190; 177; 111.
7-(3,4-Dichlorophenylamine)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (8). Yield:
90%; m.p. 136–138 °C. IR (KBr, cm−1): 3,606 (NH); 3,062; 3,005 (CH-aromatic); 2,360; 1,672 (C=N);
1,585; 1,512; 1,469; 1,388; 1,315; 1,288; 1,195; 1,149; 833; 779 (CF3).1H-NMR (CD3OD, ): 2.53 (s,
3H, CH3); 6.57 (s, 1H, H-6); 7.43 (dd, J = 2.0 Hz; J = 8.75 Hz, 1H, H-6'); 7.65 (d, J = 9.0 Hz, 1H,
13
H-5'); 7.66 (d, J = 2.5 Hz, 1H, H-2'). C-NMR (CD3OD, ): 25.23; 92.66; 121.03 (q, J = 268.5 Hz,
C-9); 125.85; 128.05; 131.77; 132.79; 134.61; 137.78; 148.31; 156.86 (q, J = 39.2 Hz, C-2); 157.38;
19
168.97. F-NMR (CD3OD, ): −67.27 (s; 3F). GC/MS m/z (%): 361 (100); 362; 363; 346; 292; 190;
177; 145.
7-(2,4-Dichlorophenylamine)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (9). Yield:
80%; m.p. 217–218 °C. IR (KBr, cm−1): 3,128 (NH); 3,066 (CH-aromatic); 1,624 (C=N); 1,577; 1,508;
1,469; 1,307; 1,288; 1,188; 1,168; 1,141; 1,099; 1,056; 844; 779 (CF3). 1H-NMR (CD3OD, ): 2.58 (s,
3H, CH3); 6.20 (s, 1H, H-6); 7.60 (dd, J = 2.0 Hz, J = 6.8 Hz, 1H, H-5'); 7.65 (d, J = 6.8 Hz, 1H, H-6');
7.82 (d, J = 2.0 Hz, 1H, H-3'). 13C-NMR (CD3OD, ): 25.13; 92.78; 121.02 (q, J = 215 Hz, C-9);
130.08; 131.74; 131.81; 133.52; 134.42; 135.94; 148.69; 156.96 (q, J = 31 Hz, C-2); 157.29; 168.85.
19F-NMR (CD3OD, ): −67.17 (s, 3F). GC/MS m/z (%): 361; 346; 328; 326 (100); 190; 177; 145.
7-(2,6-Difluorophenylamine)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (10). Yield:
80%; m.p. 129–130 °C. IR (KBr, cm−1): 3,383 (NH); 3,082; 2,357; 1,631 (C=N); 1,577; 1,516; 1,477;
1
1,373; 1,296; 1,242; 1,195; 1,161; 1,006; 794 (CF3). H-NMR (CD3OD, ): 2.51 (s, 3H, CH3); 6.14 (s,
1H, H-6); 7.22 (m, 2H, H-3', H-5'); 7.55–7.49 (m, 1H, H-4'). 13C-NMR (CD3OD, ): 25.12; 92.81; 113.82
(dd; J = 15.45 Hz, J = 3.2 Hz, 2C, C-3', C-5'); 121.01 (q, J = 214.9 Hz, C-9); 131.49 (t; J = 7.15 Hz;
2C; C-1', C-4'); 148.69; 157.02 (q, J = 31.5 Hz; C-2); 157.25; 160.36 (dd; J = 200.2 Hz, J = 2.2 Hz,
19
2C, C-2', C-6'); 169.01. F-NMR (CD3OD, ): −67.29 (s; 3F); −119.77 (s; 2F). GC/MS m/z (%): 329
(100); 330; 310; 260; 190; 177.

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7-(4-Methoxyphenylamine)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (11). Yield: 60%;
m.p. 163–164 °C. IR (KBr, cm−1): 3,606 (NH); 3,007 (CH-aromatic); 2,050; 1,629 (C=N); 1,606;
1
1,579; 1,510; 1,433; 1,377; 1,288; 1,269; 1,242; 1,031; 1,193, 1,168; 1,136, 823; 779 (CF3). H-NMR
(CD3OD, ): 2.46 (s, 3H, CH3); 3.84 (s, 3H, OCH3); 6.29 (s. 1H, H-6); 7.03 (d; J = 9.2 Hz, 2H, H-2';
H-6'); 7.34 (d, J = 9.2 Hz, 2H, H-3', H-5'). 13C-NMR (CD3OD, ): 25.11; 56.22; 91.88; 116.28; 121.04
(q, J = 268.9 Hz; C-9); 128.27; 129.88; 149.45; 156.79 (d, J = 38.7 Hz, C-2); 157.38; 160.62; 168.36.
19F-NMR (CD3OD, ): −67.24 (s, 3F). GC/MS m/z (%): 323 (100); 324; 308; 254; 190; 177.
7-(3,5-Dimethoxyphenylamine)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (12). Yield:
90%; m.p. 154–156 °C. IR (KBr, cm−1): 3,383 (NH); 3,007 (CH-aromatic); 2,968; 2,843; 1,629 (C=N);
1,604; 1,581; 1,502; 1,431; 1,346; 1,309; 1,284; 1,251; 1,205; 1,155; 1,053; 1,155; 979; 839; 777
(CF3). 1H-NMR (CD3OD,  in ppm): 2.50 (s, 3H, CH3); 3.79 (s, 6H, OCH3); 6.55 (s, 1H, H-6); 6.44 (t,
13
J = 2.4 Hz, 1H, H-4'); 6.58 (d, J = 2.4 Hz; 2H; H-2', H-6’). C-NMR (CD3OD,  in ppm): 25.08;
56.20; 92.68; 100.08; 104.29; 121.01 (q, J = 269 Hz, C-9); 139.06; 148.67; 156.75 (q, J = 39 Hz, C-2);
19
157.19; 163.38; 168.36. F-NMR (CD3OD,  in ppm): −67.19 (s, 3F). GC/MS m/z (%): 353 (100);
354; 352; 338; 282; 190; 177; 137.
7-(3,5-Dichlorophenylamine)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (13). Yield:
85%; m.p. 207–208 °C. IR (KBr, cm−1): 3,319 (NH); 3,084; 3,062; 1,624 (C=N); 1,560; 1,510; 1,433;
1
1,371; 1,319; 1,286 (C=N); 1,193; 1,174; 1,143; 806; 779 (CF3). H-NMR (CD3OD, ): 2.54 (s; 3H;
CH3); 6.61 (s; 1H; H-6); 7.41 (t; J = 0.9 Hz; 1H; H-4'); 7.48 (d; J = 1.2 Hz; 2H; H-2', H-6'). 13C-NMR
(CD3OD, ): 25.38; 93.03; 121.11 (q; J = 215 Hz; C-9); 124.54; 128.02; 137.37; 140.50; 148.11;
19
156.94 (q; J = 31.3 Hz; C-2); 157.41; 169.11. F-NMR (CD3OD, ): −67.23 (s; 3F). GC/MS m/z (%):
361; 362; 363; 346; 292; 190 (100); 177; 145.
7-(3,5-Dimethoxyphenylamine)-2,5-dimethyl[1,2,4]triazolo[1,5-a]pyrimidine (14). Yield: 90%; m.p.
112–114 °C. IR (KBr, cm−1): 3,518 (NH); 1,629 (C=N); 1,585; 1,519; 1,483; 1,388; 1,357; 1,311;
1
1,284; 1,203; 1,155; 931; 817. H-NMR (CD3OD,  in ppm): 2.45 (s, 3H, CH3); 2.52 (s, 3H, CH3);
3.80 (s, 6H, OCH3); 6.42 (s, 1H, H-6); 6.44 (dd, J = 1.6 Hz, 1H, H-4'); 6.56 (d, J = 2.0 Hz; 2H; H-2',
H-6'). 13C-NMR (CD3OD,  in ppm): 14.78; 24.96; 56.17; 91.03; 99.49; 103.81; 139.51; 147.41;
157.23; 163.28; 165.29; 166.38. GC/MS m/z (%): 299 (100); 298; 284; 269; 136; 123.
7-(3,5-Dichlorophenylamine)-2,5-dimethyl[1,2,4]triazolo[1,5-a]pyrimidine (15). Yield: 85%; m.p.
128–130 °C. IR (KBr, cm−1): 3,560 (NH); 3,138 (CH-aromatic); 1,612 (C=N); 1,591; 1,564; 1,525;
1
1,454; 1,371; 1,361; 1,321; 1,114; 935; 835; 804. H-NMR (CD3OD, ): 2.49 (s, 3H, CH3); 2.52 (s,
3H, CH3); 6.48 (s, 1H, H-6); 7.39 (dd, J = 1.2 Hz, 1H, H-4'); 7.45 (d, J = 1.2 Hz; 2H; H-2', H-6').
13C-NMR (CD3OD, ): 14.80; 25.01; 91.24; 123.86; 127.37; 123.18; 137.37; 140.77; 146.75; 157.22;
165.48; 166.87. GC/MS m/z (%): 307; 309; 272; 145; 136 (100); 123; 109.
2,5-Dimethyl-7-(4-(trifluoromethyl)phenylamine)-[1,2,4]triazolo[1,5-a]pyrimidine (16). Yield: 80%;
m.p. 191–193 °C. IR (KBr, cm−1): 3,211 (NH); 1,328; 1,604 (C=N); 1,564; 844. 1H-NMR (CD3OD, ):
2.47 (s, 3H, CH3); 2.52 (s, 3H, CH3); 6.54 (s, 1H, H-6); 7.77 (d, J = 8.0 Hz, 2H, H-2', H-6'); 7.63 (d,
J = 8.0 Hz; 2H; H-3', H-5'). 13C-NMR (CD3OD, ): 14.76; 24.98; 91.19; 125.12; 125.63 (q; J = 215 Hz;

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CF3); 128.09; 129.05 (q; J = 215 Hz; C4'); 141.96; 146.70; 157.30; 165.51; 166.85. 19F-NMR
(CD3OD, ): −63.79 (s, 3F). GC/MS m/z (%): 307 (100); 145; 136; 123.
7-(3,5-Dichlorophenylamine)-2,5-bis(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (17). Yield: 50%;
m.p 248–249 °C. IR (KBr, cm−1): 3,624 (NH); 3,313; 3,120; 1,658 (C=N); 1,622; 1,591; 1,510; 1,454;
1
1,394; 1,323; 1,301; 1,217; 1,163; 1,139; 1,051; 968; 858; 773 (CF3). H-NMR (CD3OD, ): 7.17 (t;
J = 1.2 Hz; 1H; H-4’); 7.22 (s; 1H; H-6); 7.90 (d; J = 1.2 Hz; 2H; H-2', H-6'). 13C-NMR (CD3OD, ):
106.17; 119.68; 120.07 (q; J = 217.5 Hz; C-10); 120.68 (q; J = 214.7 Hz; C-9); 125.10; 136.39 (q;
19
J = 31 Hz; C-5); 136.49; 142.02; 157.13 (q; J = 31 Hz; C-2); 157.91; 158.37. F-NMR (CD3OD, ):
−67.82 (s; 3F); −70.08 (s; 3F); GC/MS m/z (%): 414 (100); 415; 417; 396; 380; 345; 145.
7-Cyclohexylamine-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (18). Yield: 75%; m.p
128–130 °C. IR (KBr, cm−1): 3,344 (NH); 3,012; 2,941; 2,860; 2,798 (C–H); 1,624 (C=N); 1,589;
1,516; 1,452; 1,427; 1,367; 1,321; 1,303; 1,286; 1,203; 1,172, 1,155; 796 (CF3). 1H-NMR (CD3OD, ):
1.24–3.67 (m; 11H, CH2 and CH); 6.47 (s; 1H; H-6). 13C-NMR (CD3OD, ): 25.0; 26.14; 26.39; 33.22;
53.37; 90.83; 120.92 (q; J = 214.9 Hz; C-9); 148.68; 156.34 (q; J = 31.1 Hz; C-2); 157.17; 167.93.
19F-NMR (CD3OD, ): −67.28 (s; 3F; F-9); GC/MS m/z (%) 299; 280; 270; 230; 217 (100); 190; 177.
4-(5-Methyl-7-(4-morpholinyl)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (19). Yield: 70%;
m.p. 215–216 °C. IR (KBr, cm−1): 3,051; 2,972; 2,912; 2,960; 2,870 (C–H); 1618 (C=N); 1,564; 1,442;
1,371; 1,323; 1,296; 1,274; 1,213; 1,197; 1,180; 1,120; 773; (CF3). 1H-NMR (CD3OD, ): 3.91 (m, 8H,
CH2); 2.58 (s, 3H, CH3); 6.63 (s, 1H, H-6). 13C-NMR (CD3OD, ): 25.04; 49.94; 67.35; 97.35; 120.95
19
(q, J = 268.8 Hz; C-9); 156.04 (q, J = 39.1 Hz; C-2); 152.01; 158.75; 168.57. F-NMR (CD3OD, ):
−67.46 (s, 3F). GC/MS m/z (%): 287 (100); 288; 268; 256; 244; 230; 218; 202; 177.
5-Methyl-7-(4-methylpiperazin-1-yl)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (20). Yield: 90%;
m.p. 158–160 °C. IR (KBr, cm−1): 3,047; 2,976; 2,947; 2,910; 2,850; 2,800 (C-N); 1,618 (C=N); 1,554;
1
1,512; 1,450; 1,431; 1,371; 1,323; 1,294; 1,213; 1,190; 1,141; 777 (CF3). H-NMR (CD3OD, ): 2.38
(s, 3H, CH3); 2.56 (s, 3H, N-CH3); 2.68 (m, 4H); 3.94 (m, 4H); 6.63 (s, 1H, H-6). 13C-NMR (CD3OD,
): 25.03; 46.13; 49.19; 55.34; 97.56; 120.95 (q, J = 268.5 Hz, C-9); 151.86; 156.00 (q, J = 39.1 Hz,
C-2); 158.72; 168.44. 19F-NMR (CD3OD, ): −67.39 (s, 3F). GC/MS m/z (%): 300; 285; 231; 70 (100).
5-Methyl-7-(pyrrolidin-1-yl)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (21). Yield: 90%;
m.p. 234–236 °C. IR (KBr, cm−1): 2,987; 2,949; 2,877 (C-N); 1,629 (C = N); 1,571; 1,508; 1,444;
1,371; 1,355; 1,309; 1,261; 1,211; 1,192; 1,138; 771 (CF3). 1H-NMR (CD3OD, ): 2.07–2.10 (m, 8H);
2.55 (s, 3H, CH3); 6.19 (s, 1H, H-6). 13C-NMR (CD3OD, ): 24.71; 26.47; 52.36; 121.04 (q, J = 268.4 Hz,
19
C-9); 149.40; 155.84 (q, J = 38.6 Hz, C-2); 159.00; 167.12. F-NMR (CD3OD, ): −67.79 (s, 3F).
GC/MS m/z (%): 271; 252; 202 (100).
3.4. General Procedure for Preparing 5-Methyl-7-substituted[1,2,4]triazolo[1,5-a]pyrimidines 22–27
A mixture of 7-chloro-5-methyl-2-(trifluoromethyl)-[1,2,4]triazolo[1,5-a]pyrimidine (3c) and the
appropriate azole or amine (1 equivalent) in DMF (3 mL) was stirred at 120 °C for 12 h. The organic

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solvent was then removed under reduced pressure. The solid was collected and recrystallized from
EtOH/H2O to give 22–27 a yield of 50–72%.
5-Methyl-7-(pyridin-2-ylamine)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (22). Yield: 50%; m.p
174–177 °C. IR (KBr, cm−1): 3,643 (NH); 3,161 (CH-aromatic); 1,631 (C=N); 1,136; 775 (CF3).
1H-NMR (CD3OD, ): 2.64 (s; 3H; CH3); 7.81 (s; 1H; H-6); 8.43–7.16 (m; 4H; H-3'-H-6'); 8.22 (s;
NH). 13C-NMR (CD3OD, ): 25.64; 97.34; 115.97; 120.91; 121.01 (q; J = 215.0 Hz; C-9); 139.86;
19
145.21; 148.87; 153.40; 156.39 (q; J = 31.0 Hz; C-2); 156.81; 169.33. F-NMR (CD3OD, ): −67.47
(s; 3F; F-9).
5-Methyl-2-(trifluoromethyl)-7-(5-(trifluoromethyl)-3-amine-4H-1,2,4-triazolyl)[1,2,4]triazolo[1,5-a]
pyrimidine (23). Yield: 60%; m.p. 217–219 °C. IR (KBr, cm−1): 3,398; 3,334 (NH); 3,111
1
(CH-aromatic); 1,643; 1,633 (C=N); 1,190; 758; 750 (CF3). H-NMR (CD3OD, ): 2.83 (s, 3H, CH3);
7.73 (s, 1H, H-6). 13C-NMR (CD3OD, ): 25.6; 93.7; 121.01 (q, J = 268.5 Hz, C-9); 125.59 (q, J = 269 Hz,
C-18); 125.75; 128.14; 129.61 (q, J = 33 Hz, C-15); 140.1; 147.97; 156.85 (q, J = 39 Hz, C-2); 158.0;
159.7. 19F-NMR (CD3OD, ): −67.20 (s, 3F); −68.53 (s, 3F). GC/MS m/z (%): 352 (100); 333; 310; 283.
5-Methyl-7-(1H-pyrazol-1-yl)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (24). Yield: 70%;
m.p. 221–223 °C. IV (KBr, cm−1): 3,128 (NH); 1,631; 1,566; 1,195; 1,153; 783 (CF3). 1H-NMR (CD3OD):
2.79 (s, 3H, CH3), 7.93 (s, 1H, H-6); 9.38 (d, J = 2.8 Hz, H-3'); 8.03 (d, J = 1.6 Hz, H-5'); 6.78 (dd,
J = 2.8 Hz, 1.6 Hz, H-4'). 13C-NMR (CD3OD, ): 25.58; 30.81; 102.79; 111.56; 120.78 (q, J = 270 Hz,
C-9); 134.82; 143.49; 146.32; 157.70 (q, J = 40 Hz, C-2); 170.64. 19F-NMR (CD3OD, ): −67.38 (s, 3F).
GC/MS m/z (%): 268 (100); 119.
7-(1H-Imidazol-1-yl)-5-methyl-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (25). Yield: 72%;
m.p. 157–159 °C. IV (KBr, cm−1): 3,159 (NH); 3,047; 1,631(C=N); 1,192; 783 (CF3). 1H-NMR (CD3OD,
): 2.81 (s, 3H, CH3); 7.74 (s, 1H, H-6); 7.33 (s, 1H, H-5'); 8.14 (s, 1H, H-4'); 8.87 (s, 1H, H-2').
13C-NMR (CD3OD, ): 25.58; 104.92;. 120.73 (q, J = 270 Hz, C-9); 120.91; 131.16; 139.70; 141.39;
157.71 (q, J = 40 Hz, C-2); 171.21. 19F-NMR (CD3OD, ): −67.37 (s, 3F); GC/MS m/z (%):268 (100);
241; 214; 146.
5-Methyl-7-(1H-1,2,4-triazol-1-yl)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (26). Yield: 65%;
1
m.p. 173–175 °C. IV (KBr, cm−1): 3,076; 1,639 (C=N); 1,566; 1,193; 777 (CF3). H-NMR (CD3OD,
): 2.84 (s, 3H, CH3), 7.99 (s, 1H, H-6); 8.43 (s, 1H, H-5'); 9.98 (s, 1H, H-2'). 13C-NMR (CD3OD, ):
25.75; 103.95; 120.69 (q, J = 214 Hz, C-9); 141.01; 148.31; 154.58; 157.85 (q, J = 32 Hz, C-2);
171.41. 19F-NMR (CD3OD, ): −67.59 (s, 3F); GC/MS m/z (%): 269 (100); 250; 242; 92.
5-Methyl-7-(1H-pyrrol-1-yl)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine (27). Yield: 60%;
m.p. 198–200 °C. IV (KBr, cm−1): 3,375; 1,620 (C=N); 1,192; 744 (CF3). 1H-NMR (CD3OD, ): 2.69
13
(s, 3H, CH3), 7.57 (s, 1H, H-6); 7.67–6.46 (m, 4H). C-NMR (CD3OD, ): 25.12; 106.29; 112.82;
19
119.50; 120.91 (q, J = 269 Hz, C-9); 127.98; 141.05; 157.29 (q, J = 50 Hz, C-2); 168.30; F-NMR
(CD3OD, ): −67.20 (s, 3F). GC/MS m/z (%): 267 (100).

Molecules 2012, 17
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3.5. General Procedure for Preparing 5-Methyl-7-N'-(N,N-diethylpentane-1,4-diamine)[1,2,4]triazolo
[1,5-a]pyrimidines 28, 29
A mixture of a 7-chloro[1,2,4]triazolo[1,5-a]pyrimidine derivative 3a,c (1 mmol) and the
appropriate amine (1.5 mmol) in ethanol (10 mL) was stirred at room temperature for 43 h. Excess
solvent was removed under reduced pressure, giving the respective derivative 28 and 29 a yield of
80–83%, as pale yellow oils.
5-Methyl-7-N'-(N,N-diethylpentane-1,4-diamine)[1,2,4]triazolo[1,5-a]pyrimidine (28). Yield: 80%. IV
1
(neat, cm−1): 3,420 (NH); 1,651; 1,601 (C=N); 1,219; 1,149; 992. H-NMR (acetone-d6, ): 1.03 (t;
6H; J = 7 Hz, CH2-CH3); 1.23 (d; 3H; J = 7.5 Hz, CH3); 1.35 (m; 4H, CH2-CH2); 2.01 (s; 3H, CH3);
2.56–2.45 (m; 7H, CH2-CH3; CH2 and CH); 4,12 (sl; 1H, NH); 6,38 (s; 1H, H-6); 8,26 (s; 1H, H-2).
13C-NMR (acetone-d6, ): 13.3; 16.20; 19.9; 22.9; 24.0; 30.6; 46.7; 53.8; 101.1; 140.9; 154.2; 158.5;
162.7. GC/MS m/z (%): 290; 275; 230; 218; 86 (100).
5-Methyl-7-N'-(N,N-diethylpentane-1,4-diamine)-2-(trifluoromethyl)[1,2,4]triazolo[1,5-a]pyrimidine
(29). Yield: 83%. IV (neat, cm−1): 3,434 (NH); 1,650; 1,604 (C=N); 1,218; 1,151; 995; 772 e 747
(CF3). 1H-NMR (400 MHz, CD3OD, ): 1.06 (t; 6H; J = 8 Hz, CH2-CH3); 1.18 (d; 3H; J = 6 Hz, CH3);
1.70–1.45 (m; 4H, CH2-CH2); 2.56 (s; 3H, CH3); 2.80–2.45 (m; 7H, CH2-CH3; CH2 and CH); 4.15 (sl;
13
1H, NH); 6.12 (s; 1H, H-6). C-NMR (100 MHz, CD3OD, ): 9.7; 16.0; 19.3; 21.8; 24.2; 33.5; 45.9;
19
51.9; 101.1; 118.9 (q; J = 269 Hz; C-9); 144.9; 152.2 (q; J = 14.5 Hz; C-2); 158.5; 163.7. F-NMR
(376 MHz, CD3OD, ): −66.43 (s, 3F); GC/MS m/z (%):358; 86 (100); 69; 58.
4. Conclusions
One important strategy in drug design is the chemical modification of available drugs to develop
novel, biologically active compounds. This approach seeks to improve the “druggability” of analogues,
thus reducing the chance of causing parasite resistance [43]. We have synthesized 26 new derivatives
of the [1,2,4]triazolo[1,5-a]pyrimidine system, with different substituents at the 2-, 5- and 7-positions
of that ring system; these compounds exhibited a range of anti-P. falciparum activities. The data suggest
that these compounds can be used as potential agents against malaria.
The results show that compounds containing an arylamine substituent in the 7-position of
[1,2,4]triazolo[1,5-a]pyrimidine exhibit anti-plasmodial activity against the W2 chloroquine-resistant
P. falciparum clone, with IC50 values of 0.023 to 20 µM. This trend is exemplified by compounds 5
(2-naphthyl), 8 (3,4-diCl), 11 (4-OCH3), and 16 (4-CF3). In compound 5 the naphythylamine
substituent at the 7-position has an important contribution to anti-Plasmodium falciparum activity,
when compared with compounds 8 and 11, which contain arylamine groups. However, compound 16
having 4-CF3-phenylamine as a substituent at 7-position was more important than CF3 group at
2-position.
None of these compounds were toxic to HepG2 cells. The substituent groups at the 7-position of the
[1,2,4]triazolo[1,5-a]pyrimidine ring were found to play an important role in the anti-Plasmodium
activity. The trifluoromethyl group as a substituent at the 2-position of the [1,2,4]triazolo[1,5-
a]pyrimidine ring contributed to increased anti-plasmodial activity in several compounds (5, 8, 11).

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Docking simulations of the synthesized compounds with PfDHODH are in accordance with the
crystallographic investigation published elsewhere [32], which suggests that the presence of
“molecular anchors” formed by specific hydrogen bonds between the ligands and the enzyme should
be considered carefully for the design of potential new lead compounds. The residues involved in these
hydrogen bonds are H185 and R265. Moreover, additional hydrogen bonds between nearly all of the
compounds and a water molecule (W15) should also be considered for the stabilization of the
ligand-enzyme interaction. The presence of a CF3 group can facilitate such hydrogen bonds.
Acknowledgments
The authors thank the Coordination of Improvement of Higher Education (CAPES) and the
National Council of R&D of Brazil (CNPq) for the fellowships granted. We also thank the Foundation
for Research of the State of Rio de Janeiro (FAPERJ), the Foundation for Research of the State of
Minas Gerais (FAPEMIG), the Technological Development Program on Products for Health (PDTIS)
and CNPq-MCT/MS (PRONEX Rede Malaria) for financial support.
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