Journal of Medicinal Chemistry
Article
was removed under reduced pressure. EtOAc and water were added to
the residue. The organic phase was separated and the aqueous layer
extracted two times with EtOAc. After drying over MgSO4, the organic
solvent was removed in vacuo. The crude product was purified by flash
chromatography (PE/EtOAc, 70/30 to 50/50 v/v) unless otherwise
indicated.
abs and 12 (210 mg, 0.5 mmol) in 2.5 mL of DCM/abs according to
the general procedure, yielding the Bzl-protected compound as a
yellow oil, which was immediately dissolved in 10 mL of MeOH and
hydrogenated with Pd/C as catalyst for 1 h at room temperature. After
filtration over Celite, the solvent was removed under reduced pressure
1
to obtain 32 (0.21 g, 70%) as a colorless foamlike solid. H NMR
N1 ,N1 0 -Bis((tert-butoxycarbonylamino)[3-[2-(tert-
butoxycarbonyl)amino-4-methylthiazol-5-yl]propylamino]-
methylene)decanediamide (18a). The title compound was
prepared from decanedioic acid (100 mg, 0.5 mmol), EDAC (190
mg, 1 mmol), HOBt monohydrate (150 mg, 1 mmol), DIEA (0.17
mL, 1 mmol) in 5 mL of DCM/abs and 12 (410 mg, 1 mmol) in 5 mL
of DCM/abs according to the general procedure, yielding 18a (0.23 g,
46%) as a colorless foamlike solid. 1H NMR (CDCl3) δ (ppm): 12.40
(s, 2H, NH), 9.02 (t, 3J = 5.2 Hz, 2H, CH2NH), 3.45 (m, 4H,
CH2NH), 2.70 (t, 3J = 7.4 Hz, 4H, Thiaz-5-CH2), 2.35 (t, 3J = 7.5 Hz,
4H, COCH2), 2.21 (s, 6H, Thiaz-4-CH3), 1.87 (m, 4H, Thiaz-5-
CH2CH2), 1.66 (m, 4H, COCH2CH2), 1.51 (s, 18H, C(CH3)3), 1.49
(s, 18H, C(CH3)3), 1.32 (m, 8H, (CH2)4). ES-MS (DCM/MeOH +
NH4OAc) m/z (%): 993 (MH+, 100); C46H76N10O10S2 (992.5).
N1 ,N1 0 -Bis((tert-butoxycarbonylamino)[3-[2-(tert-
butoxycarbonyl)aminothiazol-5-yl]propylamino]methylene)-
decanediamide (23a). The title compound was prepared from
decanedioic acid (50 mg, 0.25 mmol), EDAC (95 mg, 0.5 mmol),
HOBt monohydrate (77 mg, 0.5 mmol), DIEA (0.08 mL, 0.5 mmol)
in 5 mL of DCM/abs and 13 (200 mg, 0.5 mmol) in 5 mL of DCM/
abs according to the general procedure, yielding 23a (0.20 g, 54%) as a
brown oil. 1H NMR (CDCl3) δ (ppm): 7.04 (s, 2H, Thiaz-4-H), 3.48
(m, 4H, CH2NH), 2.79 (m, 4H, Thiaz-5-CH2), 2.34 (m, 4H,
COCH2), 1.93 (m, 4H, Thiaz-5-CH2CH2), 1.65 (m, 4H,
COCH2CH2), 1.56 (s, 18H, C(CH3)3), 1.50 (s, 18H, C(CH3)3),
1.32 (m, 8H, (CH2)4). ES-MS (DCM/MeOH + NH4OAc) m/z (%):
965.5 (MH+, 100); C44H72N10O10S2 (964.5).
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(CDCl3) δ (ppm): 3.47 (m, 2H, CH2NH), 2.70 (t, J = 7.1 Hz, 2H,
Thiaz-5-CH2), 2.33 (m, 4H, CH2COOH, COCH2), 2.16 (s, 3H,
Thiaz-4-CH3), 1.88 (m, 2H, Thiaz-5-CH2CH2), 1.64 (m, 4H,
COCH2CH2, CH2CH2COOH), 1.53 (s, 9H, C(CH3)3), 1.49 (s, 9H,
C(CH3)3), 1.33 (s, 8H, (CH2)4). ES-MS (DCM/MeOH + NH4OAc)
m/z (%): 598 (MH+, 100); C28H47N5O7S (597.77).
N1-((tert-Butoxycarbonylamino){3-[2-(tert-butoxycarbonyla-
mino)-4-methylthiazol-5-yl]propylamino]methylene)-N10
-
((tert-butoxycarbonylamino)[3-[2-(tert-butoxycarbonylamino)-
thiazol-5-yl]propylamino]methylene)decanediamide (33a).
The title compound was prepared from 32 (135 mg, 0.23 mmol),
EDAC (44 mg, 0.23 mmol), HOBt monohydrate (35 mg, 0.23 mmol),
DIEA (0.04 mL, 0.23 mmol) in 3 mL of DCM/abs and 13 (92 mg,
0.23 mmol) in 2 mL of DCM/abs according to the general procedure,
yielding 33a (0.12 g, 57%) as a brown oil. 1H NMR (CDCl3) δ (ppm):
7.05 (s, 1H, Thiaz-4-H), 3.47 (m, 4H, CH2NH), 2.75 (m, 4H, Thiaz-5-
CH2), 2.34 (m, 4H, COCH2), 2.21 (s, 3H, Thiaz-4-CH3), 1.91 (m,
4H, Thiaz-5-CH2CH2), 1.65 (m, 4H, COCH2CH2), 1.54 (s, 18H,
C(CH3)3), 1.50 (s, 18H, C(CH3)3), 1.32 (m, 8H, (CH2)4). ESI-MS:
m/z (rel intens, %): 979.6 (MH+, 100); C45H74N10O10S2 (978.50).
N1-{(tert-Butoxycarbonylamino)[3-(1-trityl-1H-imidazol-4-
yl)propylamino]methylene]-N10-((tert-butoxycarbonylamino)-
[3-[2-(tert-butoxycarbonylamino)-4-methylthiazol-5-yl]-
propylamino]methylene)decanediamide (34a). The title com-
pound was prepared from 32 (179 mg, 0.3 mmol), EDAC (57 mg, 0.3
mmol), HOBt monohydrate (46 mg, 0.3 mmol), DIEA (0.05 mL, 0.3
mmol) in 3 mL of DCM/abs and 14 (120 mg, 0.3 mmol) in 2 mL of
DCM/abs according to the general procedure, yielding 34a (0.07 g,
N1,N10-Bis[(tert-butoxycarbonylamino)[3-(1-trityl-1H-imida-
zol-4-yl)propylamino]methylene]decanediamide (28a). The
title compound was prepared from decanedioic acid (100 mg, 0.5
mmol), EDAC (190 mg, 1 mmol), HOBt monohydrate (150 mg, 1
mmol), DIEA (0.17 mL, 1 mmol) in 5 mL of DCM/abs and 14 (510
mg, 1 mmol) in 5 mL of DCM/abs according to the general procedure
(flash chromatography CHCl3/MeOH, 95/5 v/v), yielding 28a (0.18
1
24%) as a brown oil. H NMR (CDCl3) δ (ppm): 8.82 (s, 1H, Im-2-
H), 7.37−7.22 (m, 16H, Im-5-H, CPh3), 3.38 (m, 4H, CH2NH), 2.84
(t, 3J = 7.7 Hz, 2H, Im-4-CH2), 2.71 (t, 3J = 7.4 Hz, 2H, Thiaz-5-CH2),
2.47 (m, 4H, COCH2), 2.18 (s, 3H, Thiaz-4-CH3), 2.03 (m, 2H, Im-4-
CH2CH2), 1.90 (m, 2H, Thiaz-5-CH2CH2), 1.66 (m, 4H,
COCH2CH2), 1.52 (s, 18H, C(CH3)3), 1.35 (m, 8H, (CH2)4). ESI-
MS: m/z (rel intens, %): 989.7 (MH+, 100); C54H72N10O6S (988.54).
Preparation of the Trt-Protected Bivalent Acylguanidine
35a. N1,N10-Bis{amino[3-(1-trityl-1H-1,2,4-triazol-5-yl)-
propylamino]methylene}decanediamide (35a). To a solution
of CDI (195 mg, 1.2 mmol) in DMF (7 mL), decanedioic acid (100
mg, 0.5 mmol) was added. The mixture was stirred under argon for 1
h. In a second flask, 3-(1-trityl-1H-1,2,4-triazol-5-yl)propylguanidine45
(410 mg, 1 mmol) and NaH (60% dispersion in oil) (80 mg, 2 mmol)
in DMF (7 mL) under argon were heated to 30−35 °C for 45 min,
and the mixture was then allowed to cool to room temperature. The
two mixtures were combined and stirred for 4 h at ambient
temperature. The solvent was removed in vacuo and the crude
product was purified by flash chromatography (CHCl3/MeOH/NH3,
95/3/2 v/v/v) to obtain 35a (300 mg, 60%) as pale white foamlike
1
g, 30%) as a yellow oil. H NMR (CDCl3) δ (ppm): 7.33−7.12 (m,
32H, Im-2-H, CPh3), 6.53 (d, 4J = 1.0 Hz, 2H, Im-5-H), 3.43 (m, 4H,
CH2NH), 2.59 (t, 3J = 7.6 Hz, 4H, Im-4-CH2), 2.34 (m, 4H, COCH2),
1.90 (m, 4H, Im-4-CH2CH2), 1.65 (m, 4H, COCH2CH2), 1.49 (s,
18H, C(CH3)3), 1.27 (m, 8H, (CH2)4). ES-MS (DCM/MeOH +
NH4OAc) m/z (%): 1185 (MH+, 100); C72H84N10O6 (1184.66).
Compounds 15a−17a, 19a−22a, 24a−27a, 29a, and 30a were
prepared by analogy (see Supporting Information).
Preparation of the Boc-Protected Bivalent Acylguanidines
33a and 34a. 10-Benzyloxy-10-oxodecanoic Acid (31).71
Phenylmethanol (0.27 g, 0.25 mL, 2.47 mmol) was dropwise added
to a cooled suspension of decanedioic acid (0.5 g, 2.47 mmol) and
DMAP (cat.) in 3 mL of THF/abs. A solution of DCC (0.61 g, 2.96
mmol) in 3 mL of THF/abs was dropwise added to this mixture and
stirred for 72 h at ambient temperature. Subsequently, 1,1-
dicyclohexylurea was filtered and the solvent removed under reduced
pressure. The crude product was subjected to flash chromatography
(PE/EtOAc, 90/10 v/v) to obtain 31 (0.34 g, 47%) as a colorless
1
solid. H NMR (CD3OD) δ (ppm): 8.01 (s, 2H, Triaz-3-H), 7.37−
7.05 (m, 30H, CPh3), 3.14 (t, 3J = 7.6 Hz, 4H, CH2NH), 2.88 (m, 4H,
3
Triaz-5-CH2), 2.41 (t, J = 7.5 Hz, 4H, COCH2), 1.96 (m, 4H, Triaz-
5-CH2CH2), 1.63 (m, 4H, COCH2CH2), 1.29 (m, 8H, (CH2)4). ES-
MS (DCM/MeOH + NH4OAc) m/z (%): 987.7 (MH+, 10), 494.4
((M+2H)2+, 100); C60H66N12O2 (987.25).
1
semisolid. H NMR (CDCl3) δ (ppm): 10.88 (s, 1H, COOH), 7.34
(m, 5H, Ar-H), 5.11 (s, 2H, CH2-Ar), 2.34 (m, 4H, COCH2), 1.61 (m,
4H, COCH2CH2), 1.29 (s, 8H, (CH2)4). 13C NMR (CDCl3) δ ppm:
179.80 (quat COOH), 173.72 (quat CO), 136.12 (quat Ar-C),
128.55 (+, Ar-CH), 128.18 (+, Ar-CH), 66.11 (−, CH2-Ar), 34.30 (−,
CH2COOH), 34.04 (−, COCH2), 29.02 (−, CH2), 28.96 (−, CH2),
24.90 (−, COCH2CH2), 24.64 (−, CH2CH2COOH). EI-MS (70 eV)
m/z (%): 292 (M+•, 30); C17H24O4 (292.37).
10-((tert-Butoxycarbonylamino)[3-[2-(tert-butoxycarbonyla-
mino)-4-methylthiazol-5-yl]propylamino]methyleneamino)-
10-oxodecanoic Acid (32). Compound 32 was prepared from 31
(150 mg, 0.5 mmol), EDAC (95 mg, 0.5 mmol), HOBt monohydrate
(80 mg, 0.5 mmol), DIEA (0.09 mL, 0.5 mmol) in 2.5 mL of DCM/
Preparation of Deprotected Bivalent Acylguanidines 15−30
and 33−35. General Procedure. TFA (20%) was added to a
solution of the protected acylguanidines 15a−30a and 33a−35a in
DCM/abs, and the mixture was stirred at ambient temperature until
the protecting groups (Boc, Trt) were removed (3−5 h).
Subsequently, the solvent was evaporated in vacuo and the residue
was purified by preparative RP-HPLC and lyophilized. All compounds
were obtained as trifluoroacetic acid salts.
N1,N10-Bis[[3-(2-amino-4-methylthiazol-5-yl)propylamino]-
(amino)methylene]decanediamide Tetratrifluoroacetate (18).
The title compound was prepared from 18a (200 mg, 0.19 mmol) in 5
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dx.doi.org/10.1021/jm201128q | J. Med. Chem. 2012, 55, 1147−1160